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Science across all disciplines has become increasingly data-driven, leading to additional needs with respect to software for collecting, processing and analysing data. Thus, transparency about software used as part of the scientific process is crucial to understand provenance of individual research data and insights, is a prerequisite for reproducibility and can enable macro-analysis of the evolution of scientific methods over time. However, missing rigor in software citation practices renders the automated detection and disambiguation of software mentions a challenging problem. In this work, we provide a large-scale analysis of software usage and citation practices facilitated through an unprecedented knowledge graph of software mentions and affiliated metadata generated through supervised information extraction models trained on a unique gold standard corpus and applied to more than 3 million scientific articles. Our information extraction approach distinguishes different types of software and mentions, disambiguates mentions and outperforms the state-of-the-art significantly, leading to the most comprehensive corpus of 11.8 M software mentions that are described through a knowledge graph consisting of more than 300 M triples. Our analysis provides insights into the evolution of software usage and citation patterns across various fields, ranks of journals, and impact of publications. Whereas, to the best of our knowledge, this is the most comprehensive analysis of software use and citation at the time, all data and models are shared publicly to facilitate further research into scientific use and citation of software.

Digital fraud has immensely affected ordinary consumers and the finance industry. Our dependence on internet banking has made digital fraud a substantial problem. Financial institutions across the globe are trying to improve their digital fraud detection and deterrence capabilities. Fraud detection is a reactive process, and it usually incurs a cost to save the system from an ongoing malicious activity. Fraud deterrence is the capability of a system to withstand any fraudulent attempts. Fraud deterrence is a challenging task and researchers across the globe are proposing new solutions to improve deterrence capabilities. In this work, we focus on the very important problem of fraud deterrence. Our proposed work uses an Intimation Rule Based (IRB) alert generation algorithm. These IRB alerts are classified based on severity levels. Our proposed solution uses a richer domain knowledge base and rule-based reasoning. In this work, we propose an ontology-based financial fraud detection and deterrence model.

The recent proliferation of multimedia information on the web enhances user information need from simple textual lookup to multi-modal exploration activities. The current search engines act as major gateways to access the immense amount of multimedia data. However, access to the multimedia content is provided by aggregating disjoint multimedia search verticals. The aggregation of the multimedia search results cannot consider relationships in them and are partially blended. Additionally, the search results’ presentation is via linear lists, which cannot support the users’ non-linear navigation patterns to explore the multimedia search results. Contrarily, users’ are demanding more services from search engines. It includes adequate access to navigate, explore, and discover multimedia information. Our discovery approach allow users to explore and discover multimedia information by semantically aggregating disjoint verticals using sentence embeddings and transforming snippets into conceptually similar multimedia document groups. The proposed aggregation approach retains the relationship in the retrieved multimedia search results. A non-linear graph is instantiated to augment the users’ non-linear information navigation and exploration patterns, which leads to discovering new and interesting search results at various aggregated granularity levels. Our method’s empirical evaluation results achieve 99% accuracy in the aggregation of disjoint search results at different aggregated search granularity levels. Our approach provides a standard baseline for the exploration of multimedia aggregation search results.

Several higher education institutions have harnessed e-learning tools to empower the application of different learning models that enrich the educational process. Nevertheless, the reliance on commercial or open-source platforms, in some cases, to deliver e-learning could impact system acceptability, usability, and capability. Therefore, this study suggests design methods to develop effective learning management capabilities such as attendance, coordination, course folder, course section homepage, learning materials, syllabus, emails, and student tracking within a university portal named MyGJU. In particular, mechanisms to facilitate system setup, data integrity, information security, e-learning data reuse, version control automation, and multi-user collaboration have been applied to enable the e-learning modules in MyGJU to overcome some of the drawbacks of their counterparts in Moodle. Such system improvements are required to motivate both educators and students to engage in online learning. Besides, features comparisons between MyGJU with Moodle and in-house systems have been conducted for reference. Also, the system deployment outcomes and user survey results confirm the wide acceptance among instructors and students to use MyGJU as a first point of contact, as opposed to Moodle, for basic e-learning tasks. Further, the results illustrate that the in-house e-learning modules in MyGJU are engaging, easy to use, useful, and interactive.

While the publication of Linked Data has become increasingly common, the process tends to be a relatively complicated and heavy-weight one. Linked Data is typically published by centralized entities in the form of larger dataset releases, which has the downside that there is a central bottleneck in the form of the organization or individual responsible for the releases. Moreover, certain kinds of data entries, in particular those with subjective or original content, currently do not fit into any existing dataset and are therefore more difficult to publish. To address these problems, we present here an approach to use nanopublications and a decentralized network of services to allow users to directly publish small Linked Data statements through a simple and user-friendly interface, called Nanobench, powered by semantic templates that are themselves published as nanopublications. The published nanopublications are cryptographically verifiable and can be queried through a redundant and decentralized network of services, based on the grlc API generator and a new quad extension of Triple Pattern Fragments. We show here that these two kinds of services are complementary and together allow us to query nanopublications in a reliable and efficient manner. We also show that Nanobench makes it indeed very easy for users to publish Linked Data statements, even for those who have no prior experience in Linked Data publishing.

Dealing with relational data always required significant computational resources, domain expertise and task-dependent feature engineering to incorporate structural information into a predictive model. Nowadays, a family of automated graph feature engineering techniques has been proposed in different streams of literature. So-called graph embeddings provide a powerful tool to construct vectorized feature spaces for graphs and their components, such as nodes, edges and subgraphs under preserving inner graph properties. Using the constructed feature spaces, many machine learning problems on graphs can be solved via standard frameworks suitable for vectorized feature representation. Our survey aims to describe the core concepts of graph embeddings and provide several taxonomies for their description. First, we start with the methodological approach and extract three types of graph embedding models based on matrix factorization, random-walks and deep learning approaches. Next, we describe how different types of networks impact the ability of models to incorporate structural and attributed data into a unified embedding. Going further, we perform a thorough evaluation of graph embedding applications to machine learning problems on graphs, among which are node classification, link prediction, clustering, visualization, compression, and a family of the whole graph embedding algorithms suitable for graph classification, similarity and alignment problems. Finally, we overview the existing applications of graph embeddings to computer science domains, formulate open problems and provide experiment results, explaining how different networks properties result in graph embeddings quality in the four classic machine learning problems on graphs, such as node classification, link prediction, clustering and graph visualization. As a result, our survey covers a new rapidly growing field of network feature engineering, presents an in-depth analysis of models based on network types, and overviews a wide range of applications to machine learning problems on graphs.

The rapid growth of the worldwide web and accompanied opportunities of web applications in various aspects of life have attracted the attention of organizations, governments, and individuals. Consequently, web applications have increasingly become the target of cyberattacks. Notably, cross-site scripting (XSS) attacks on web applications are increasing and have become the critical focus of information security experts’ reports. Machine learning (ML) technique has significantly advanced and shown impressive results in the area of cybersecurity. However, XSS training datasets are often limited and significantly unbalanced, which does not meet well-developed ML algorithms’ requirements and potentially limits the detection system efficiency. Furthermore, XSS attacks have multiple payload vectors that execute in different ways, resulting in many real threats passing through the detection system undetected. In this study, we propose a conditional Wasserstein generative adversarial network with a gradient penalty to enhance the XSS detection system in a low-resource data environment. The proposed method integrates a conditional generative adversarial network and Wasserstein generative adversarial network with a gradient penalty to obtain necessary data from directivity, which improves the strength of the security system over unbalance data. The proposed method generates synthetic samples of minority class that have identical distribution as real XSS attack scenarios. The augmented data were used to train a new boosting model and subsequently evaluated the model using a real test dataset. Experiments on two unbalanced XSS attack datasets demonstrate that the proposed model generates valid and reliable samples. Furthermore, the samples were indistinguishable from real XSS data and significantly enhanced the detection of XSS attacks compared with state-of-the-art methods.

It is essential for the advancement of science that researchers share, reuse and reproduce each other’s workflows and protocols. The FAIR principles are a set of guidelines that aim to maximize the value and usefulness of research data, and emphasize the importance of making digital objects findable and reusable by others. The question of how to apply these principles not just to data but also to the workflows and protocols that consume and produce them is still under debate and poses a number of challenges. In this paper we describe a two-fold approach of simultaneously applying the FAIR principles to scientific workflows as well as the involved data. We apply and evaluate our approach on the case of the PREDICT workflow, a highly cited drug repurposing workflow. This includes FAIRification of the involved datasets, as well as applying semantic technologies to represent and store data about the detailed versions of the general protocol, of the concrete workflow instructions, and of their execution traces. We propose a semantic model to address these specific requirements and was evaluated by answering competency questions. This semantic model consists of classes and relations from a number of existing ontologies, including Workflow4ever, PROV, EDAM, and BPMN. This allowed us then to formulate and answer new kinds of competency questions. Our evaluation shows the high degree to which our FAIRified OpenPREDICT workflow now adheres to the FAIR principles and the practicality and usefulness of being able to answer our new competency questions.

Despite most Spatial Data Infrastructures are offering service-based visualization of geospatial data, requirements are often at a very basic level leading to poor quality of maps. This is a general observation for any geospatial architecture as soon as open standards as those of the Open Geospatial Consortium (OGC) shall be applied. To improve the situation, this paper does focus on improvements at the portrayal interoperability side by considering standardization aspects. We propose two major redesign recommendations. First to consolidate the cartographic theory at the core of the OGC Symbology Encoding standard. Secondly to build the standard in a modular way so as to be ready to be extended with upcoming future cartographic requirements. Thus, we start by defining portrayal interoperability by means of typical use cases that frame the concept of sharing cartography. Then we bring to light the strengths and limits of the relevant open standards to consider in this context. Finally we propose a set of recommendations to overcome the limits so as to make these use cases a true reality. Even if the definition of a cartographic-oriented standard is not able to act as a complete cartographic design framework by itself, we argue that pushing forward the standardization work dedicated to cartography is a way to share and disseminate good practices and finally to improve the quality of the visualizations.

We describe best practices for providing convenient, high-speed, secure access to large data via research data portals. We capture these best practices in a new design pattern, the Modern Research Data Portal, that disaggregates the traditional monolithic web-based data portal to achieve orders-of-magnitude increases in data transfer performance, support new deployment architectures that decouple control logic from data storage, and reduce development and operations costs. We introduce the design pattern; explain how it leverages high-performance data enclaves and cloud-based data management services; review representative examples at research laboratories and universities, including both experimental facilities and supercomputer sites; describe how to leverage Python APIs for authentication, authorization, data transfer, and data sharing; and use coding examples to demonstrate how these APIs can be used to implement a range of research data portal capabilities. Sample code at a companion web site, https://docs.globus.org/mrdp, provides application skeletons that readers can adapt to realize their own research data portals.