1. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5
- Author
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Jong Kook Park, Yong Peng, Ri Cui, Hui-Lung Sun, Jeong Su Oh, Tae Jin Lee, Ji Hoon Lee, Ju Hwan Cho, Esmerina Tili, Ju Hee Lee, Hosung Sim, Hiroshi Nakanishi, Young-Jun Jeon, Kang Sup Shim, Bong Hwan Sung, Sung Hak Kim, Taewan Kim, Paolo Fadda, Huijun Wei, Carlo M. Croce, Sang Bong Ko, Hansjuerg Alder, Man Il Huh, and Zhenghua Luo
- Subjects
Sequence analysis ,Molecular Sequence Data ,Biology ,Real-Time Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,chemistry.chemical_compound ,Cell Line, Tumor ,Neoplasms ,Humans ,Genetic Predisposition to Disease ,RNA, Small Interfering ,Allele ,Promoter Regions, Genetic ,Enhancer ,Gene ,Genetics ,Regulation of gene expression ,Multidisciplinary ,Base Sequence ,RNA ,Sequence Analysis, DNA ,Biological Sciences ,Flow Cytometry ,Long non-coding RNA ,Gene Expression Regulation, Neoplastic ,Enhancer Elements, Genetic ,chemistry ,RNA, Long Noncoding ,DNA ,Chromosomes, Human, Pair 8 - Abstract
Significance Many cancer-associated variants have been found in the 8q24.21 region harboring enhancer activity. However, the functional mechanism of the variants is not clear due to the lack of protein-coding genes in the region and no significant correlation with the nearest oncogene MYC . We identified long noncoding RNAs (lncRNAs) named cancer-associated region long noncoding RNAs ( CARLo s) in the 8q24.21 region. Interestingly, we found that the cancer-associated variant rs6983267 regulating the enhancer activity is significantly associated with the expression of one of the lncRNAs CARLo-5 and that CARLo-5 has an oncogenic function. By showing direct interaction between the enhancer region and active regulatory region of the CARLo-5 promoter, we provide a regulatory mechanism of cancer susceptibility caused by the cancer-associated variants.
- Published
- 2014
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