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Identifying flying insects is a significant challenge for biologists. Entomological lidar offers a unique solution, enabling rapid identification and classification in field settings. No other method can match its speed and efficiency in identifying insects in flight. This non-intrusive tool is invaluable for assessing insect biodiversity, informing conservation planning, and evaluating efforts to address declining insect populations. Although the species richness of co-existing insects can reach tens of thousands, current photonic sensors and lidars can differentiate roughly one hundred signal types. While the retrieved number of clusters correlate with Malaise trap diversity estimates, this taxonomic specificity, the number of discernible signal types is currently limited by instrumentation and algorithm sophistication. In this study, we report 32,533 observations of wild flying insects along a 500-meter transect. We report the benefits of lidar polarization bands for differentiating species and compare the performance of two unsupervised clustering algorithms, namely Hierarchical Cluster Analysis and Gaussian Mixture Model. Our analysis shows that polarimetric properties could be partially predicted even with unpolarized light, thus polarimetric lidar bands provide only a minor improvement in specificity. Finally, we use the physical properties of the clustered observations, such as wing beat frequency, daily activity patterns, and spatial distribution, to establish a lower bound for the number of species represented by the differentiated signal types. [ABSTRACT FROM AUTHOR]

The prairies of Canada support a diversity of insect pollinators that contribute pollination services to flowering crops and wild plants. Habitat loss and use of managed pollinators has increased conservation concerns for wild pollinators, as mounting evidence suggests that honey bees (Apis mellifera) may reduce their diversity and abundance. Plant-pollinator community analyses often omit non-bee pollinators, which can be valuable contributors to pollination services. Here, we experimentally introduced honey bees to examine how their abundance affects the species richness, diversity, abundance, species composition, interaction richness, and interaction diversity of all wild pollinators, and of four higher taxa separately. We identified all insect pollinators and analyzed how honey bee abundance affected the above biodiversity metrics, controlling for flower abundance and flower species richness. Even with high honey bee densities, there was no change to any of these variables, except that beetle species diversity increased. All other taxa had no significant relationship to honey bee abundance. Considering the widespread use of managed honey bees, the effect they have on wild pollinators should be firmly established. Our results suggest that honey bees have little to no short-term impact on the wild pollinator community or its interactions with plants in this native grassland. [ABSTRACT FROM AUTHOR]

We hypothesize that sample species abundance, sequencing depth, and taxonomic relatedness influence the recovery of metagenome-assembled genomes (MAGs). To test this hypothesis, we assessed MAG recovery in three in silico microbial communities composed of 42 species with the same richness but different sample species abundance, sequencing depth, and taxonomic distribution profiles using three different pipelines for MAG recovery. The pipeline developed by Parks and colleagues (8K) generated the highest number of MAGs and the lowest number of true positives per community profile. The pipeline by Karst and colleagues (DT) showed the most accurate results (~ 92%), outperforming the 8K and Multi-Metagenome pipeline (MM) developed by Albertsen and collaborators. Sequencing depth influenced the accurate recovery of genomes when using the 8K and MM, even with contrasting patterns: the MM pipeline recovered more MAGs found in the original communities when employing sequencing depths up to 60 million reads, while the 8K recovered more true positives in communities sequenced above 60 million reads. DT showed the best species recovery from the same genus, even though close-related species have a low recovery rate in all pipelines. Our results highlight that more bins do not translate to the actual community composition and that sequencing depth plays a role in MAG recovery and increased community resolution. Even low MAG recovery error rates can significantly impact biological inferences. Our data indicates that the scientific community should curate their findings from MAG recovery, especially when asserting novel species or metabolic traits. Author summary: Microbial communities are incredibly diverse and play essential roles in ecosystems, from recycling nutrients to influencing climate change. We explored how the microbial community assembly can influence its species' metagenomics recovery. Specifically, we examined how the abundance of different species within a sample, the extent of DNA sequencing (sequencing depth), and the species taxonomic relatedness affect our ability to accurately reconstruct these communities. We computationally simulated three microbial communities, each composed of 42 species. These communities varied in species abundance, sequencing depth, and how closely related the species were to each other. We then applied three different computational techniques to reconstruct the original communities from the simulated sequence data. Our findings highlight the critical impact of sequencing depth and taxonomical relatedness, specifically, on accurately recovering microbial genomes. Interestingly, more sequencing does not always equate to more accurate community representation. Moreover, even a few false positives can significantly distort our interpretations of microbial diversity and function. Our research underscores the importance of carefully considering these factors in metagenomic studies to avoid misleading conclusions about microbial ecosystems. Our work contributes to refining metagenomic techniques, aiming for a more reliable and nuanced understanding of microbial life's role in our planet's health and functioning. [ABSTRACT FROM AUTHOR]

The events of the Cenozoic era such as mountain formation caused Iran to become one of the most amazing biodiversity hotspots in the world today. This pioneering study on Iranian snake biogeography integrates historical and ecological analyses. A phylogeographic review traces speciation and dispersal, while cluster analysis with a new snake checklist assesses faunistic similarities within Iran and its surroundings. Jaccard and Sorenson indices generate similarity dendrograms, Indicator Species Analysis pinpoints regional key species, and Endemism index calculates regional endemism rates, enriching our knowledge of Iran's species diversity. Phylogeographic analyses identify four biogeographical corridors for snake ingress into Iran: the Arabian region through southwestern Iran, the Western Asian mountainous transition zone via northwestern Iran, the Turanian region into northeastern Iran, and the Indus River Valley into southeastern and eastern Iran. Dendrogram analysis divides snake fauna into three groups. The first group associates western Zagros and Khuzestan fauna with the Sahara and Arabian regions. The second group links Kopet Dagh and Turkmen Steppe fauna with the Turanian region, and Central Plateau and Baluchistan fauna with the Iranian region. The third group connects northwest highlands, Alborz and Zagros mountains, and Caspian Sea coasts with the Western Asian Mountain transition zone. The study validates broad biogeographic patterns via ecoregional associations and indicator species analysis, providing finer resolution. Species like Platyceps najadum in Caspian Hyrcanian mixed forests exemplify ecoregional alignment, while Zagros and Alborz mountains exhibit unique faunal indicators, indicating species-level divergence. Shared indicators among widespread ecoregions reflect habitat continuity; exclusive indicators emphasize regional distinctiveness. Despite endemic species prevalence, they seldom act as significant indicators due to various factors. Our research confirms the Zagros Mountains, Khuzestan Plain, Alborz Mountains, and Persian Gulf coasts as snake diversity hotspots, marked by higher species richness compared to other Iranian regions. [ABSTRACT FROM AUTHOR]

In a rapidly changing world, where species conservation needs vary by local habitat, concentrated conservation efforts at small spatial scales can be critical. Bats provide an array of value to the ecosystems they inhabit; many bat species are also of conservation concern. San Diego County, California, contains 22 of the 41 bat species that occur in the United States, 16 of which are on conservation watchlists. Thus, management of bat communities in San Diego County is a pressing need. Because bats exploit vast areas of the landscape and historical sampling strategies have shifted over time, a standardized way of prioritizing areas of the landscape for management would provide an integral asset to bat conservation. We leveraged long-term bat community survey data from sampling areas across San Diego County to prioritize areas with the most management need. We calculated two types of scores: species scores and threat scores. Species scores incorporated richness and conservation status, and threat scores included landscape level threats that bats could encounter. We found that urbanization, the presence of artificial lights, and areas sampled on unconserved land were all significantly associated with decreases in species richness. Further, using species and threat scores, each sampling area was placed into one of four conservation categories, in order from greatest to least conservation need, ranging from highest priority (high species score, high threat score) to lowest (low species score, low threat score). Additionally, we focused on sampling areas in which Townsend's big-eared bat (Corynorhinus townsendii) and/or pallid bat (Antrozous pallidus) occurred. These two species are of exceptional conservation concern in San Diego County and across the western United States. We identified urbanization, the presence of artificial lights, and areas sampled on unconserved land as threats that were all significantly associated with the absence of Townsend's big-eared bat, but not pallid bat. The strategy, methodology, and solutions proposed in our study should assist bat conservation and management efforts wherever bats occur, and can be extended to other species that require conservation attention. [ABSTRACT FROM AUTHOR]

Continuous cropping is a common cultivation practice in lavender cultivation, and the structure of the soil microbial community is one of the main reasons affecting the continuous cropping disorder in lavender; however, the relationship between the number of years of cultivation and inter-root microbial composition has not yet been investigated; using Illumina high-throughput sequencing we detected fungal community structure of rhizosphere soil under 1 (L1), 3 (L3), 5 (L5) and 0 (L0) years' of lavender cultivation in Yili, Xinjiang China. The results showed that with the extension of planting years, the physical-chemical characteristics of the soil shifted, and the diversity of the fungal communities shrank, the abundance and richness of species decreased and then increased, and the phylogenetic diversity increased, The structure of the soil fungal communities varied greatly. At phylum level, dominant fungal phyla were Ascomycetes, Basidiomycetes, etc. At genus level, dominant genera were Gibberella, Mortierella, etc, whose absolute abundance all increased with increasing planting years (P < 0.05); redundancy analysis showed that thesoil physicochemical characteristics significantly correlated with dominant bacterial genera. The FUN Guild prediction showed that six groups of plant pathogens and plant saprotrophs changed significantly (P < 0.05), the amount of harmful bacteria in the soil increased while the amount of arbuscular mycorrhizal fungui (AMF) decreased, leading to a continuous cropping obstacle of lavender. The findings of this study provida theoretical foundation for the management of continuous cropping and the prevention fungus-related diseases in lavender. [ABSTRACT FROM AUTHOR]

In microbial community sequencing, involving bacterial ribosomal 16S rDNA or fungal ITS, the targeted genes are the basis for taxonomical assignment. The traditional bioinformatical procedure has for decades made use of a clustering protocol by which sequences are pooled into packages of shared percent identity, typically at 97%, to yield Operational Technical Units (OTUs). Progress in the data processing methods has however led to the possibility of minimizing technical sequencers errors, which were the main reason for the OTU choice, and to analyze instead the exact Amplicon Sequence Variants (ASV) which is a choice yielding much less agglomerated reads. We have tested the two procedures on the same 16S metabarcoded bacterial amplicons dataset encompassing a series of samples from 17 adjacent habitats, taken across a 700 meter-long transect of different ecological conditions unfolding in a gradient spanning from cropland, through meadows, forest and all successional transitions up to the seashore, within the same coastal area. This design allowed to scan a high biodiversity basin and to measure alpha, beta and gamma diversity of the area, to verify the effect of the bioinformatics on the same data as concerns the values of ten different ecological indexes and other parameters. Two levels of progressive OTUs clustering, (99% and 97%) were compared with the ASV data. The results showed that the OTUs clustering proportionally led to a marked underestimation of the ecological indicators values for species diversity and to a distorted behaviour of the dominance and evenness indexes with respect to the direct use of the ASV data. Multivariate ordination analyses resulted also sensitive in terms of tree topology and coherence. Overall, data support the view that reference-based OTU clustering carries several misleading disadvantageous biases, including the risk of missing novel taxa which are yet unreferenced in databases. Since its alternatives as de novo clustering have on the other hand drawbacks due to heavier computational demand and results comparability, especially for environmental studies which contain several yet uncharacterized species, the direct ASV based analysis, at least for prokaryotes, appears to warrant significand advantages in comparison to OTU clustering at every level of percent identity cutoff. [ABSTRACT FROM AUTHOR]

Arthropod-borne rickettsioses comprise a wide variety of subtypes that are endemic in Cambodia, but there remains very little data on the geographic distribution of the pathogens or their vectors. Surveys were conducted in Koh Kong and Preah Sihanouk Provinces between September 2017 and June 2018 to collect ectoparasites from peridomestic animals and the environment using dragging and flagging methods. Collected ectoparasites were sorted and identified morphologically, then pooled by species, host, and location for molecular detection using Rickettsia genus- and species-specific qPCR and/or multilocus sequence typing (MLST) assays. A total of 14,254 ectoparasites were collected including seven new locality records. Rickettsia species were detected in 35.5% (174/505) of the pools screened representing 3,149 randomly selected ectoparasites from the total collected. Rickettsia asembonensis was detected in 89.6% (147/164) of Rickettsia-positive flea pools and 3.6% (6/164) of the flea pools were positive for both R. asembonensis and Rickettsia felis. Candidatus Rickettsia senegalensis from Ctenocephalides orientis fleas and Rickettsia sp. close to Rickettsia japonica and Rickettsia heilongjiangensis from Haemaphysalis ticks were identified by MLST. This appears to be the first report of these new ectoparasite records and rickettsial species in southern Cambodia, suggesting a potential health risk to military and civilians in this region. Author summary: Rickettsiae are Gram-negative bacteria that cause acute undifferentiated febrile illness in humans. These pathogens are associated with arthropods and primarily transmitted by ectoparasites such as ticks, fleas, and mites. In Cambodia, rickettsial diseases have been documented in local patients, travelers and military personnel. However, the lack of entomological studies and awareness of these diseases hindered our comprehensive understanding of these pathogens and their arthropod vectors. Our manuscript provides a description of ectoparasite diversity and sheds light on their potential role in rickettsial disease transmission. Through molecular techniques, we uncover the prevalence and diversity of Rickettsia species in ectoparasites collected from various animal hosts in Koh Kong and Preah Sihanouk province. Rickettsia asembonensis, Rickettsia felis, and Candidatus Rickettsia senegalensis were all identified from Ctenocephalides orientis fleas, while Rickettsia species closely related to Rickettsia japonica, Rickettsia heilongjiangensis, and Rickettsia raoultii were found from Haemaphysalis ticks. Additionally, Rickettsia were also detected in Heterodoxus spiniger lice and Laelapidae mites, although we were unable to characterize the species. Insights into this pathogen-vector-host interface will better inform healthcare professionals, leading to more accurate diagnoses and increased awareness for better management of these diseases. [ABSTRACT FROM AUTHOR]

Polygonatum odoratum (Mill.) Druce is a well-known traditional Chinese herb belonging to the Polygonatum. However, the understanding of the genetic diversity of this species at the molecular level is limited due to the lack of transcriptomic and genomic information. In this study, 37,387 unigenes were assembled based on the transcriptome sequencing of the rhizome of Polygonatum odoratum (Mill.) Druce., and 11,021 single- sequence repeats (SSR) motifs, mainly consisting of single-nucleotide repeats (44.44%), dinucleotides (31.06%), and trinucleotides (22.59%), were identified. Based on these SSR motifs, 9,987 primer pairs of SSR markers were designed and 68 SSR markers were randomly selected for verification, of which 21 SSR markers showed polymorphisms among the 24 Polygonatum odoratum germplasms. Ninety-four alleles were detected: the observed alleles ranged from 2 to 11, the effective alleles varied from 1.086 8 to 4.916 8, the Shannon diversity index was 0.173 2~1.749 7, and the polymorphism information content PIC ranged from 0.076 7 to 0.803 9. Based on our analysis of genetic diversity (SSR genotypes) and population structure, we divided the 24 germplasm resources into two groups, indicating that the germplasm with similar geographical origins can be grouped together. In addition, the primers 'YZ14' and 'YZ47' could effectively distinguished the related species: Polygonatum kingianum Coll.et Hemsl., Polygonatum sibiricum Red., Polygonatum cyrtonema Hua, Polygonatum zanlanscianense Pamp. and Polygonatum odoratum (Mill.) Druce. This is the first study in which a dataset of expressed sequence tag (EST)-SSR markers is constructed for the Polygonatum odoratum (Mill.) Druce, and these newly developed EST-SSR markers provided a very efficient tool for genetic relationship analysis, species identification and marker-assisted selection breeding of Polygonatum odoratum (Mill.) Druce. [ABSTRACT FROM AUTHOR]

Species interactions between bats and fungi are poorly known. We documented the association between fungal and bat diversities along a landscape gradient. Ten, eight, and seven bat species were captured in conserved, semi-conserved, and urban sites, respectively. Eptesicus fuscus, Myotis ciliolabrum and Corynorhinus townsendii were the most abundant in conserved and semi-conserved sites. E. fuscus, Myotis velifer, and Lasiurus cinereus were abundant in urban sites. C. townsendii was the least abundant bat. A total of 15 cultivated fungi genera included the fungal diversity in bats, of which nine fungi genera were shared along the landscape gradient. Penicillium and Aspergillus were the most abundant genera, and Aureobasidium, Bispora, Stachybotrys, and Verticillium were only documented in the conserved sites. We observed a higher fungal diversity associated with bat species along this landscape gradient. The individual site-based accumulation curves of fungal diversity showed significant decreasing values along the conserved, semi-conserved, and urban sites, respectively. In conserved and urban sites, M. californicus and M. velifer showed the highest fungal diversity, respectively. E. fuscus was associated to the fungi genera Scopulariopsis, Alternaria, Penicillium and Beauveria; L. cinereus to Cladosporium and Aspergillus, and M. velifer to Alternaria sp1, Bispora and Trichoderma. Conserved sites showed both high bat and fungal diversities [species richness and abundance] compared to semi-conserved and urban sites. More studies associating bat and fungal diversities in other ecosystems are needed to corroborate this pattern. [ABSTRACT FROM AUTHOR]

Increasing densities of woody plants, known as woody plant encroachment, is a phenomenon affecting savannas and grasslands in many parts of the world. Yet, these ecosystems sustain a significant proportion of the human population through the provision of ecosystem services, such as forage for livestock and wildlife production. While low to medium altitude rangelands are encroached by many species of woody plants, high altitude rangelands in southern Africa show increasing densities of Leucosidea sericea, a woody shrub or small to medium-sized tree. Influences of this species on rangeland dynamics are unknown. This study aimed to determine the influence of L. sericea on rangeland functioning in the Vuvu communal area in the Eastern Cape, South Africa. Effects of L. sericea on plant species diversity and composition, rangeland condition and grazing capacity were measured in sites of variable densities of the species in topographical locations designated as plains, upland and stream sites, using a point-to-tuft method along 50-m long transects. Soil samples were collected to a depth of 5 cm from plains, streams, and upland sites, and analysed for organic carbon, nitrogen, phosphorus, magnesium, calcium, and pH. Plant species richness and abundance were similar among topographical locations, which was reflected by the similar Shannon-Weiner (H′) diversity indices among sites. Topographical locations differed significantly in species composition. The plains sites had a higher grazing capacity than stream sites, which had a grazing capacity similar to that of upland sites. Values of soil physicochemical properties were similar among the sites. Overall, soils were acidic (range in pH: 4.4–4.6) and had low amounts of organic carbon and total nitrogen. These findings suggest that L. sericea is not the primary cause of rangeland degradation as all sites were in poor condition as shown by the low grazing capacity, poor rangeland condition and depauperate species richness and diversity. Therefore, rangeland management should shift towards restoration strategies aimed to revitalise the rangeland. [ABSTRACT FROM AUTHOR]

Annamocarya sinensis (Dode) Leroy, a relict plant from the Tertiary period, is a member of Annamocarya genus in the Juglandaceae family. Despite its wide distribution in Guangxi Province, the habitats of this species had become fragmented and isolated, causing it facing deterioration. For protecting this endangered species, it is crucial to understand its status in the wild and genetic diversity. In this study, 216 A. sinensis accessions from 18 populations in Guangxi were examined using Start Codon Target Polymorphism (SCoT) markers for PCR amplification, genetic diversity, and population structure analysis. Out of the 20 SCoT primers used, 222 sites were amplified, with 185 being polymorphic (PPB of 83.33%). Polymorphic information content values ranged from 0.4380 to 0.4999, Nei's genetic diversity index ranging from 0.1573 to 0.2503, and Shannon diversity index ranged from 0.1583 to 0.3812. Through AMOVA analysis, the total genetic diversity and genetic diversity within populations was calculated out as 0.3271 and 0.1542 respectively, the genetic differentiation coefficient between populations was 0.5286, with a gene flow 0.4458. Cluster analysis categorized A. sinensis germplasm into three groups, while population structure analysis divided all accessions into three ancestral sources with 19.91% showing mixed ancestral origins. No significant correlation was observed between genetic and geographical distance on the Mentel test (r = 0.07348, p = 0.7468). Overall, A. sinensis displays a relatively rich genetic diversity at the species level, albeit with a fairly uniform genetic background and high genetic differentiation. This study provides a crucial basis for the conservation and innovative use of A. sinensis germplasm resources. [ABSTRACT FROM AUTHOR]

Madagascar's unique dry forests, particularly gallery and spiny forests, face severe threats and are significantly understudied, leaving only a fraction of the original extent intact. Thus, there is a critical need for characterizing, conserving, and restoring this diverse forest ecosystem. Conducting extensive floristic surveys and environmental analyses, we investigated structural and compositional differences between the gallery and spiny forests, as well as within distinct gallery forest sites in Berenty Reserve in the south of the island. We also evaluated differences in habitat quality between the spiny and gallery forests for three species of diurnal lemurs in the reserve, and analyzed the current population trend of the tamarind trees, a species of ecological and cultural importance in Madagascar. Our findings revealed that the spiny and gallery forests differed in composition and structure, confirming the unique ecological characteristics of gallery forests and the underexplored richness of spiny forests. Spiny forests exhibited higher species richness despite a comparatively lower sampling effort, emphasizing the need for focused conservation efforts in these overlooked ecosystems. Tamarind populations, vital for lemur nutrition, showed signs of inadequate regeneration suggesting a recruitment bottleneck, possibly due to factors like a lowering water table, brown lemur foraging habits, or shifts in environmental conditions. Urgent interventions, including enrichment plantations, were recommended to ensure the survival of this keystone species. Contrasting botanical and lemur-centric perspectives revealed that while spiny and gallery forests differed botanically, they offered comparable habitat quality for ring-tailed and sifaka lemurs. However, brown lemurs exhibit a preference for the gallery forest, highlighting the intricate relationship between plant composition and lemur habitat choices. Our study underscores the urgency of expanding our knowledge of Madagascar´s dry forests, and Berenty Reserve, as one of the few remaining protected areas with gallery and spiny forests, serves as a reference for future research in Madagascar's understudied ecosystems. [ABSTRACT FROM AUTHOR]

The genus Rhinella corresponds to a group of anurans characterized by numerous taxonomic and systemic challenges, leading to their organization into species complexes. Cytogenetic data for this genus thus far are limited to the diploid number and chromosome morphology, which remain highly conserved among the species. In this study, we analyse the karyotypes of three species of the genus Rhinella (Rhinella granulosa, Rhinella margaritifera, and Rhinella marina) using both classical (conventional staining and C-banding) and molecular (FISH-fluorescence in situ hybridization with 18S rDNA, telomeric sequences, and microsatellite probes) cytogenetic approaches. The aim of this study is to provide data that can reveal variations in the distribution of repetitive sequences that can contribute to understanding karyotypic diversification in these species. The results revealed a conserved karyotype across the species, with 2n = 22 and FN = 44, with metacentric and submetacentric chromosomes. C-banding revealed heterochromatic blocks in the pericentromeric region for all species, with a proximal block on the long arms of pairs 3 and 6 in R. marina and on the short arms of pairs 4 and 6 in R. margaritifera. Additionally, 18S rDNA probes hybridized to pair 5 in R. granulosa, to pair 7 in R. marina, and to pair 10 in R. margaritifera. Telomeric sequence probes displayed signals exclusively in the distal region of the chromosomes, while microsatellite DNA probes showed species-specific patterns. These findings indicate that despite a conserved karyotypical macrostructure, chromosomal differences exist among the species due to the accumulation of repetitive sequences. This variation may be attributed to chromosome rearrangements or differential accumulation of these sequences, highlighting the dynamic role of repetitive sequences in the chromosomal evolution of Rhinella species. Ultimately, this study emphasizes the importance of the role of repetitive DNAs in chromosomal rearrangements to elucidate the evolutionary mechanisms leading to independent diversification in the distinct phylogenetic groups of Rhinella. [ABSTRACT FROM AUTHOR]

We use community phylogenetics to elucidate the community assembly mechanisms for Geometridae moths (Lepidoptera) collected along a complete rainforest elevational gradient (200–3700 m a.s.l) on Mount Wilhelm in Papua New Guinea. A constrained phylogeny based on COI barcodes for 604 species was used to analyse 1390 species x elevation occurrences at eight elevational sites separated by 500 m elevation increments. We obtained Nearest Relatedness Index (NRI), Nearest Taxon Index (NTI) and Standardised Effect Size of Faith's Phylogenetic Diversity (SES.PD) and regressed these on temperature, plant species richness and predator abundance as key abiotic and biotic predictors. We also quantified beta diversity in the moth communities between elevations using the Phylogenetic Sorensen index. Overall, geometrid communities exhibited phylogenetic clustering, suggesting environmental filters, particularly at higher elevations at and above 2200 m a.s.l and no evidence of overdispersion. NRI, NTI and SES.PD showed no consistent trends with elevation or the studied biotic and abiotic variables. Change in community structure was driven by turnover of phylogenetic beta-diversity, except for the highest 2700–3200 m elevations, which were characterised by nested subsets of lower elevation communities. Overall, the elevational signal of geometrid phylogeny was weak-moderate. Additional insect community phylogeny studies are needed to understand this pattern. [ABSTRACT FROM AUTHOR]

Orchidaceae is one of the most diverse and widespread groups of flowering plants. Despite their immense ecological and socio-economic value, their spatial distribution across forest disturbance gradient is not well understood, particularly in tropical montane forests. This study assessed the influence of forest degradation on orchid species richness and abundance in West Mau Forest, Kenya. Stratified systematic sampling was adopted across three different disturbance regimes consisting of relatively intact forest, moderately disturbed forest and highly degraded forest. A total of five orchid species were recorded from nine host-tree species. The intact forest had seven host tree species with five orchid species. The moderately degraded forest had four host-tree species with two orchid species, while the highly degraded forest that had no orchids. Polystachya confusa was the most abundant orchid species (600.0±227.9 clumps ha-1) followed by Bulbophyllum sp (340.0±112.2 clumps ha-1), Chamaeangis sp (300.0±115.5 clumps ha-1), Aerangis sp (200.0±57.7 clumps ha-1) and Tridactyle sp (100.0±0.0 clumps ha-1). The results of this study indicate that forest degradation reduces orchid species diversity in tropical montane forests. They also show that orchids are bioindicators of forest degradation status. [ABSTRACT FROM AUTHOR]

Reclamation of disturbances from oil sands mining requires effective soil management to ensure successful plant establishment and to promote recovery of native plant communities. In this study we investigated the effects of salvage depths (shallow vs. deep) and placement depths (shallow vs. deep) of forest topsoil on plant establishment, species richness, and soil properties in two substrate types (sand and peat-mineral). Shallow salvage led to greater tree stem densities and higher canopy cover for most plant groups, although there was no significant difference in species richness between shallow and deep salvages. Deep placement generally resulted in greater canopy cover, while its effect on plant density was very small for most plant groups. On peat-mineral substrate, fewer differences were detected between shallow and deep salvage, and multiple treatments resulted in greater cover. Findings suggest that a balance between maximizing the area over which propagules are redistributed and providing sufficient resources for successful plant establishment is necessary. Forest topsoil from shallow salvages and deep placements is recommended when targeting increased site productivity and species diversity. In contrast, deep salvage should be used when the primary objective is to obtain maximum reclamation material volume. Salvage depth effects may be influenced by substrate type, with peat-mineral substrate providing more favourable conditions for plant establishment. Further research is needed to assess the long-term impacts of different salvage and placement depths on plant community development and the potential effects of substrate properties on soil and plant response. [ABSTRACT FROM AUTHOR]

Species richness is one of the fundamental metrics of biodiversity. Estimating species richness helps spotlight taxonomic groups that are particularly under-studied, such as the highly diverse Darwin wasps. The only available estimate of the number of Darwin wasps in the Afrotropics proposed almost 11,000 species, compared to the 2,322 recorded species. However, it relied exclusively on the ratio of morphospecies to described species in Henry Townes' personal collection. We provide an updated estimate of the Afrotropical Darwin wasp species, using empirical data from multiple sources, including the increase in species numbers following generic revisions, morphospecies sorting in natural history collections, and diversity patterns of better-studied insects (butterflies) for extrapolation. Our analyses suggest that our knowledge of Darwin wasps is highly incomplete, with only 13–22% of species known in the five most extensively studied countries in the Afrotropics. We estimate 9,206–15,577 species of Darwin wasps within the entire Afrotropics, with the highest concentration expected in the Equatorial Afrotropics and Madagascar. Due to data constraints, our approach tends to underestimate diversity at each step, rendering the upper estimate (15,577 species) more realistic. We highlight reasons contributing to the gap between recorded and estimated species richness, including logistical and financial factors, as well as post-colonial influences. [ABSTRACT FROM AUTHOR]

Roads negatively impact wildlife through habitat fragmentation, loss of habitat connectivity, and wildlife-vehicle collisions, thus road mitigation structures, such as wildlife crossing structures (WCS), wildlife guards (WG), and fencing are commonly used to address this issue all over the world, including in the United States. In South Texas, such structures were built or modified along a State Highway in an effort to address road mortality for the endangered ocelot (Leopardus pardalis) and non-target wildlife species. The goal of this study was to examine temporal changes in wildlife interactions with WCS and WG during and after their construction and modification along a South Texas highway and to determine whether environmental factors influenced use of WCS. Using camera traps deployed to monitor the road mitigation structures, we compared crossing rates, repel rates, and species richness of all species that interacted with the structures, and we examined whether differential wildlife use of WCS and WG was affected by one or more structural dimensions, distance to nearby vegetation, and water presence. Crossings through WCS by wildlife decreased following the completion of construction of mitigation structures; however, repel interactions at WG increased. Overall, crossings decreased at WCS that had higher openness ratios and during periods of precipitation and higher daily temperatures, but distance to vegetation had minimal influence. These factors were shown to influence crossings of each of the five most frequently observed species differently. Lastly, the presence of pooled water at one WCS caused a decrease in crossings when the water level was highest but was not a barrier at lower water levels. By examining influences on wildlife interaction with road mitigation structures, we conclude that a variety of structures, including different WCS configurations, can be beneficial in facilitating movement and restricting entry into the right-of-way for a diversity of wildlife species beyond the target species. [ABSTRACT FROM AUTHOR]

Background: Ticks, as critical vectors of a variety of pathogens, pose a significant public health challenge globally. In Southeast Asia (SEA), ticks are responsible for transmitting a diverse array of pathogens affecting humans and animals. The geographical and ecological diversity of SEA provides a unique environment that supports a wide range of tick species, which complicates the management and study of tick-borne diseases (TBDs). Methodology/principal findings: This article synthesizes findings from the first international symposium on ticks and TBDs in Southeast Asia, held in Phnom Penh on June 22 and 23, 2023. It highlights regional efforts to understand tick ecology and pathogen transmission. This paper proposes to present a summary of the various presentations given during the symposium following 3 main parts. The first one is devoted to the state of knowledge regarding ticks and TBDs in SEA countries, with presentations from 6 different countries, namely Cambodia, Indonesia, Laos, Malaysia, Thailand, and Vietnam. The second part focuses on the development of new research approaches on tick-borne pathogens (TBPs) and TBDs. The last part is a summary of the round table discussion held on the final day, with the aim of defining the most important challenges and recommendations for researches on TBP and TBD in the SEA region. Conclusions/Significance: Key topics discussed include advancements in diagnostic tools, such as MALDI-TOF MS and proteomics, and the development of sustainable strategies for tick management and disease prevention. The symposium facilitated the exchange of knowledge and collaborative networks among experts from various disciplines, promoting a unified approach to tackling TBDs in the region. The symposium underscored the need for enhanced surveillance, diagnostics, and inter-regional cooperation to manage the threat of TBDs effectively. Recommendations include the establishment of a regional database for tick identification and the expansion of vector competence studies. These initiatives are crucial for developing targeted interventions and understanding the broader implications of climate change and urbanization on the prevalence of TBDs. Author summary: Ticks are arthropods that can transmit pathogens affecting both animals and people. In Southeast Asia, the diversity of tick species and the tick-borne pathogens is particularly high due to the region's varied climates and ecosystems. Our research, discussed during an international symposium, focuses on understanding these ticks and finding better ways to detect and manage the associated diseases. This symposium highlighted knowledge on ticks and tick-borne pathogens in the different countries, new technologies such as perspectives in research. This work is important because it helps in developing strategies to prevent these diseases, which is crucial for the health of people and animals in Southeast Asia and beyond. This work not only advances scientific knowledge but also supports efforts to improve public health in response to the challenges posed by environmental changes, such as climate and land-use changes. [ABSTRACT FROM AUTHOR]

Species' range size is a fundamental unit of analysis in biodiversity research, given its association with extinction risk and species richness. One of its most notable patterns is its positive relationship with latitude, which has been considered an ecogeographical rule called Rapoport's rule. Despite this rule being confirmed for various taxonomic groups, its validity has been widely discussed and several taxa still lack a formal assessment. Different hypotheses have been proposed to explain their potential mechanisms, with those related to temperature and elevational being the most supported thus far. In this study, we employed two level of analyses (cross-species and assemblage) to investigate the validity of Rapoport's rule in spiny lizards (genus Sceloporus). Additionally, we evaluated four environmental-related hypotheses (minimum temperature, temperature variability, temperature stability since the last glacial maximum, and elevation) posed to explain such pattern, contrasting our results to those patterns expected under a null model of range position. Our results provided support for Rapoport's rule at both levels of analyses, contrasting with null expectations. Consistently, minimum temperature and elevation were the most relevant variables explaining the spatial variation in range size. At the cross-species level, our null simulations revealed that both variables deviated significantly from random expectations. Conversely, at the assemblage level, none of the variables were statistically different from the expected relationships. We discussed the implication of our findings in relation to the ecology and evolution of spiny lizards. [ABSTRACT FROM AUTHOR]

Monitoring trends in wildlife communities is integral to making informed land management decisions and applying conservation strategies. Birds inhabit most niches in every environment and because of this they are widely accepted as an indicator species for environmental health. Traditionally, point counts are the common method to survey bird populations, however, passive acoustic monitoring approaches using autonomous recording units have been shown to be cost-effective alternatives to point count surveys. Advancements in automatic acoustic classification technologies, such as BirdNET, can aid in these efforts by quickly processing large volumes of acoustic recordings to identify bird species. While the utility of BirdNET has been demonstrated in several applications, there is little understanding of its effectiveness in surveying declining grassland birds. We conducted a study to evaluate the performance of BirdNET to survey grassland bird communities in Nebraska by comparing this automated approach to point count surveys. We deployed ten autonomous recording units from March through September 2022: five recorders in row-crop fields and five recorders in perennial grassland fields. During this study period, we visited each site three times to conduct point count surveys. We compared focal grassland bird species richness between point count surveys and the autonomous recording units at two different temporal scales and at six different confidence thresholds. Total species richness (focal and non-focal) for both methods was also compared at five different confidence thresholds using species accumulation curves. The results from this study demonstrate the usefulness of BirdNET at estimating long-term grassland bird species richness at default confidence scores, however, obtaining accurate abundance estimates for uncommon bird species may require validation with traditional methods. [ABSTRACT FROM AUTHOR]

Exploring the relationship between soil properties and species diversity in typical forest stands in Liaoning Xianrendong National Nature Reserve will help maintain the stability of forest communities in the transition zone between flora in Changbai and North China. Based on the plant-soil feedback theory, community sample data from nine typical forest stands in the study area and experimental test data from 54 soil samples, we selected indexes of soil physical and chemical properties based on the minimum data set (temperature, compactness, capillary pore space, bulk weight, capillary water holding capacity, drainage capacity, soil water storage, conductivity, pH, organic matter, Ca, Fe, K, N and P). We adopt the research method of classical statistical analysis. The soil properties of nine typical stands in Xianrendong National Nature Reserve of Liaoning Province were systematically analyzed. The relationship between soil properties and forest stands' species diversity was quantified using correlation and redundancy analyses. The Pearson correlation analysis results showed significant positive correlations between the Gleason abundance index (arbors) with conductivity, pH, organic matter, Ca, N and P; Pielou's evenness index (arbors) with bulk weight and Fe. Significant negative correlations between the Gleason abundance index (arbors) with capillary pore space, bulk weight, drainage capacity, soil water storage and capillary water holding capacity; Simpson dominance index and Shannon–Wiener diversity index with capillary water holding capacity, drainage capacity and soil water storage; Pielou's evenness index (arbors) with Ca and N. The natural moisture content and clay particles are neutral feedback. The results showed that the feedback mechanism of soil physicochemical properties on stand species diversity was complex, which was conducive to species coexistence and community stability. [ABSTRACT FROM AUTHOR]

A long-standing key issue for examining the relationships between biodiversity and ecosystem functioning (BEF), such as forest productivity, is whether ecosystem functions are influenced by the total number of species or the properties of a few key species. Compared with controlled ecosystem experiments, the BEF relationships in secondary forest remain unclear, as do the effects of common species richness and rare species richness on the variation in ecosystem functions. To address this issue, we conducted field surveys at five sampling sites (1 ha each) with subtropical secondary evergreen broad-leaved forest vegetation. We found (1) a positive correlation between species richness and standing aboveground biomass (AGB); (2) that common species were primarily responsible for the distribution patterns of species abundance and dominance; although they accounted for approximately 25% of the total species richness on average, they represented 86–91% of species abundance and 88–97% of species dominance; and (3) that common species richness could explain much more of the variation in AGB than total species richness (common species plus rare species) at both the site and plot scales. Because rare species and common species were not equivalent in their ability to predict productivity in the biodiversity-ecosystem productivity model, redundant information should be eliminated to obtain more accurate results. Our study suggested that woody plant species richness and productivity relationship in subtropical forest ecosystem can be explained and predicted by a few common species. [ABSTRACT FROM AUTHOR]

Fish stocks have declined rapidly over the past half-century due to the increased demand for seafood and unsustainable fishing practices. The incidental capture of non-target species (bycatch) is a pervasive issue in fisheries management and has led to population declines in non-target species worldwide. The fisheries sector in Guyana currently supports the livelihoods of over 10,000 Guyanese and contributes approximately 2% to the country's GDP. Bycatch is believed to be a major threat to Guyana's marine fisheries, especially the small-scale sector, due to a lack of management infrastructure and limited data and monitoring. Here, we assessed bycatch in Guyana's artisanal gillnet and Chinese seine fisheries through vessel observations and semi-structured interviews with local fishers. Most of the discarded species documented had no commercial importance to the fisheries in Guyana. Although no statistical difference was observed among the bycatch rates in the gillnet and Chinese seine fisheries, the latter generally had more discarded individuals, most of which were juveniles. The Shannon-Weiner diversity index showed a greater diversity of bycatch species in the gillnet fisheries compared to the Chinese seine. Jaccard's similarity index indicated a low similarity among the gear types. Even though most fishers were aware of bycatch, they did not view it as a major issue and were not interested in reducing their discards. We recommend a collaborative approach in exploring solutions to ensure the ecological and socioeconomic sustainability of the fisheries sector. [ABSTRACT FROM AUTHOR]

Mounting evidence shows overall insect abundances are in decline globally. Habitat loss, climate change, and pesticides have all been implicated, but their relative effects have never been evaluated in a comprehensive large-scale study. We harmonized 17 years of land use, climate, multiple classes of pesticides, and butterfly survey data across 81 counties in five states in the US Midwest. We find community-wide declines in total butterfly abundance and species richness to be most strongly associated with insecticides in general, and for butterfly species richness the use of neonicotinoid-treated seeds in particular. This included the abundance of the migratory monarch (Danaus plexippus), whose decline is the focus of intensive debate and public concern. Insect declines cannot be understood without comprehensive data on all putative drivers, and the 2015 cessation of neonicotinoid data releases in the US will impede future research. [ABSTRACT FROM AUTHOR]

Host-associated resident microbiota can protect their host from pathogens—a community-level trait called colonization resistance. The effect of the diversity of the resident community in previous studies has shown contradictory results, with higher diversity either strengthening or weakening colonization resistance. To control the confounding factors that may lead to such contradictions, we use mathematical simulations with a focus on species interactions and their impact on colonization resistance. We use a mediator-explicit model that accounts for metabolite-mediated interactions to perform in silico invasion experiments. We show that the relationship between colonization resistance and species richness of the resident community is not monotonic because it depends on two underlying trends as the richness of the resident community increases: a decrease in instances of augmentation (invader species added, without driving out resident species) and an increase in instances of displacement (invader species added, driving out some of the resident species). These trends hold consistently under different parameters, regardless of the number of compounds that mediate interactions between species or the proportion of the facilitative versus inhibitory interactions among species. Our results show a positive correlation between resistance and diversity in low-richness communities and a negative correlation in high-richness communities, offering an explanation for the seemingly contradictory trend in the resistance-diversity relationship in previous reports. Author summary: Empirically, different trends have been observed between the richness of a resident community and how resistant that community is against the introduction of new members: resident communities with higher richness can be more resistant against invaders in some cases and less resistant in other cases. To explain what can cause such seemingly contradictory trends, we used simulations of the invasion process using a simple model of microbial interactions through metabolites and metabolic byproducts. We found that two underlying trends consistently exist: the chance of augmentation (invader species added, without driving out resident species) and the chance of displacement (invader species added, driving out some of the resident species) decreases, in communities with higher richness. The combination of these two trends can lead to a not monotonic relationship between resistance against invaders and the species richness of the resident community. Our model predicts that in low-richness (versus high-richness) communities, resistance-diversity has a positive (versus negative) correlation, explaining the previously observed trends in the resistance-diversity relationship. [ABSTRACT FROM AUTHOR]

Commercial fisheries along the US West Coast are important components of local and regional economies. They use various fishing gear, target a high diversity of species, and are highly spatially heterogeneous, making it challenging to generate a synoptic picture of fisheries activity in the region. Still, understanding the spatial and temporal dynamics of US West Coast fisheries is critical to meet the US legal mandate to manage fisheries sustainably and to better coordinate activities among a growing number of users of ocean space, including offshore renewable energy, aquaculture, shipping, and interactions with habitats and key non-fishery species such as seabirds and marine mammals. We analyzed vessel tracking data from Vessel Monitoring System (VMS) from 2010 to 2017 to generate high-resolution spatio-temporal estimates of contemporary fishing effort across a wide range of commercial fisheries along the entire US West Coast. We identified over 247,000 fishing trips across the entire VMS data, covering over 25 different fisheries. We validated the spatial accuracy of our analyses using independent estimates of spatial groundfish fisheries effort generated through the NOAA's National Marine Fisheries Service Observer Program. Additionally, for commercial groundfish fisheries operating in federal waters in California, we combined the VMS data with landings and ex-vessel value data from California commercial fisheries landings receipts to generate highly resolved estimates of landings and ex-vessel value, matching over 38,000 fish tickets with VMS data that included 87% of the landings and 76% of the ex-vessel value for groundfish. We highlight fisheries-specific and spatially-resolved patterns of effort, landings, and ex-vessel value, a bimodal distribution of fishing effort with respect to depth, and variable and generally declining effort over eight years. The information generated by our study can help inform future sustainable spatial fisheries management and other activities in the marine environment including offshore renewable energy planning. [ABSTRACT FROM AUTHOR]

The relationship between primary productivity and diversity has been demonstrated across taxa and spatial scales, but for organisms with biphasic life cycles, little research has examined whether productivity of larval and adult environments influence each life stage independently, or whether productivity of one life stage's environment outweighs the influence of the other. Experimental work demonstrates that tadpoles of stream-breeding anurans can exhibit a top-down influence on aquatic primary productivity (APP), but few studies have sought evidence of a bottom-up influence of primary productivity on anuran abundance, species richness and community composition, as seen in other organisms. We examined aquatic and terrestrial primary productivity in two forest types in Borneo, along with amphibian abundance, species richness, and community composition at larval and adult stages, to determine whether there is evidence for a bottom-up influence of APP on tadpole abundance and species richness across streams, and the relative importance of aquatic and terrestrial primary productivity on larval and adult phases of anurans. We predicted that adult richness, abundance, and community composition would be influenced by terrestrial primary productivity, but that tadpole richness, abundance, and community composition would be influenced by APP. Contrary to expectations, we did not find evidence that primary productivity, or variation thereof, predicts anuran richness at larval or adult stages. Further, no measure of primary productivity or its variation was a significant predictor of adult abundance, or of adult or tadpole community composition. For tadpoles, we found that in areas with low terrestrial primary productivity, abundance was positively related to APP, but in areas with high terrestrial primary productivity, abundance was negatively related to APP, suggesting a bottom-up influence of primary productivity on abundance in secondary forest, and a top-down influence of tadpoles on primary productivity in primary forest. Additional data are needed to better understand the ecological interactions between terrestrial primary productivity, aquatic primary productivity, and tadpole abundance. [ABSTRACT FROM AUTHOR]

Tidal flats provide critical habitat for migratory waterbird species; however, populations of migratory waterbirds have significantly declined due to tidal flat loss and degradation caused by human activities, particularly in Asia. Gochang getbol is one of tidal flats located on the southwest coast of South Korea and a center of clam production. Using bird monitoring data collected at five zones (zone1 to zone5) established across Gochang getbol and near coastal area, we examined distribution patterns of migratory bird diversity and conservation-related species along the coast of Gochang getbol. The intensity of human activity ‒ mudflat culture (mostly bivalve) and aquaculture was relatively high at zone2 and zone3, occupying > 30% of 2km circular area surrounding most sample points of these zones. Zone1 and particularly zone4 contained more natural/semi-natural habitats (less disturbed mudflats and wetlands) and zone5 had smallest mudflat than others. Shannon diversity, species richness, and abundance of migratory birds differed between zones (Anova test, P ≤ 0.02) except Shannon diversity in winter. In fall, all values were higher at zone4 than zone3 and zone5. In winter, zone1 showed greatest species richness and higher abundance than zone2, zone3, and zone5. In spring, while most differences were found between zone4 and zone5, abundance at zone4 was somewhat higher than zone2. The results from the fourth corner analysis indicated that abundance of species foraging at mudflat level was positively associated with zone1 (winter) but negatively with zone3 (fall). Sandpipers were positively associated with zone4. Abundance distribution maps of conservation-related species, created by inverse distance-weighted interpolation modeling, also showed high abundance of most conservation-related species at zone4 and 1. The findings of our study suggest the importance of natural/semi-natural habitat, and the possible link between human activity and distribution patterns of migratory birds in Gochang getbol. While we need further investigation on direct response of migratory birds to human activity, areas with low human activity with more natural/semi-natural habitat, e.g., zone4 and zone1 may be crucial for the conservation of migratory birds. [ABSTRACT FROM AUTHOR]

This study investigated the sand fly fauna of the municipality Iguatama, in the Midwest Region of Minas Gerais state, Brazil, including Leishmania infection rates and blood meal sources. Sand flies were collected during four periods over the course of a single year, encompassing both dry and rainy seasons, using CDC light traps placed in peridomiciles where dogs were seropositive for visceral leishmaniasis (VL). A total of 762 sand fly specimens, representing 12 species across seven genera, were collected. Lutzomyia longipalpis was the most abundant species, comprising 57.6% of the collected specimens, followed by Nyssomyia neivai (19.6%) and Nyssomyia whitmani (10.5%). Species richness and diversity varied among collection periods, with the highest diversity observed in January 2019. Molecular analysis detected Leishmania DNA in 12.5% of the sand fly specimens, with Le. infantum being the predominant species. Blood meal analysis revealed feeding on multiple vertebrate species, including humans, rats, dogs, and chickens. The presence of Leishmania DNA in sand flies, and the identification of human blood meals, highlight the potential role of these species in VL transmission. These findings underscore the importance of continued surveillance and control measures to prevent the spread of VL and reduce transmission risk in the region. [ABSTRACT FROM AUTHOR]

Biodiversity is in rapid decline globally with agriculture being one of the leading causes. Within agricultural landscapes, some features provide a benefit to biodiversity that is disproportionate to their spatial area. An interesting example is artificial ponds–or farm dams–which can support a large variety of taxa. Here, we present a global review of farm dam research related to biodiversity conservation objectives to provide an overview of the topics, key research insights, and the characteristics of current research. We used a three-stage process to screen literature and identified 104 relevant papers across 27 countries encompassing studies of 13 different taxa. Most of the studies were short-term (less than 5 years) with small sample sizes (less than 20 sites). Of the 104 papers, 88 were focussed primarily on ecological outcomes, such as species richness or abundance, and 15 on primary production outcomes, such as crop and livestock yield, despite addressing or measuring ecological metrics. Only one study measured both ecological and primary production outcomes. Studies frequently examined how the features of dams (79 studies) and attributes of the surrounding landscape (47 studies) impact particular species and communities. Terrestrial mammals (1 study) were under-represented in the literature with macrophytes (28 studies), macroinvertebrates (26 studies), and amphibians (19 studies) receiving the most attention. Our results reveal a growing trend towards recognizing farm dams as habitats for various taxa, including amphibians, beetles, dragonflies, and other macroinvertebrates within agricultural environments. Significant knowledge gaps exist in understanding how dam age, invasive species, and effective management practices impact the biodiversity conservation values of farm dams. Future research should emphasize enhancing biodiversity by collaborating with landholders to increase habitat through strategic vegetation planning, minimizing runoff and nutrient inflow, and restricting stock access. [ABSTRACT FROM AUTHOR]

An accurate assessment of species diversity is a cornerstone of biology and conservation. The lynx spiders (Araneae: Oxyopidae) represent one of the most diverse and widespread cursorial spider groups, however their species richness in Asia is highly underestimated. In this study, we revised species diversity with extensive taxon sampling in Taiwan and explored species boundaries based on morphological traits and genetic data using a two-step approach of molecular species delimitation. Firstly, we employed a single COI dataset and applied two genetic distance-based methods: ABGD and ASAP, and two topology-based methods: GMYC and bPTP. Secondly, we further analyzed the lineages that were not consistently delimited, and incorporated H3 to the dataset for a coalescent-based analysis using BPP. A total of eight morphological species were recognized, including five new species, Hamataliwa cordivulvasp. nov., Hamat. leporaurissp. nov., Tapponia auriolasp. nov., T. parvasp. nov. and T. rarobulbussp. nov., and three newly recorded species, Hamadruas hieroglyphica (Thorell, 1887), Hamat. foveata Tang & Li, 2012 and Peucetia latikae Tikader, 1970. All eight morphological species exhibited reciprocally monophyletic lineages. The results of molecular-based delimitation analyses suggested a variety of species hypotheses that did not fully correspond to the eight morphological species. We found that Hamat. cordivulvasp. nov. and Hamat. foveata showed shallow genetic differentiation in the COI, but they were unequivocally distinguishable according to their genitalia. In contrast, T. parvasp. nov. represented a deep divergent lineage, while differences of genitalia were not detected. This study highlights the need to comprehensively employ multiple evidence and methods to delineate species boundaries and the values of diagnostic morphological characters for taxonomic studies in lynx spiders. [ABSTRACT FROM AUTHOR]

Mixed-species groups and aggregations are quite common and may provide substantial fitness-related benefits to group members. Individuals may benefit from the overall size of the mixed-species group or from the diversity of species present, or both. Here we exposed mixed-species flocks of songbirds (Carolina chickadees, Poecile carolinensis, tufted titmice, Baeolophus bicolor, and the satellite species attracted to these two species) to three different novel feeder experiments to assess the influence of mixed-species flock size and composition on ability to solve the feeder tasks. We also assessed the potential role of habitat density and traffic noise on birds' ability to solve these tasks. We found that likelihood of solving a novel feeder task was associated with mixed-species flock size and composition, though the specific social factor involved depended on the particular species and on the novel feeder. We did not find an influence of habitat density or background traffic noise on likelihood of solving novel feeder tasks. Overall, our results reveal the importance of variation in mixed-species group size and diversity on foraging success in these songbirds. [ABSTRACT FROM AUTHOR]

Ticks are a hematophagous parasite and a vector of pathogens for numerous human and animal diseases of significant importance. The expansion of tick distribution and the increased risk of tick-borne diseases due to global climate change necessitates further study of the spatial distribution trend of ticks and their potential influencing factors. This study constructed a dataset of tick species distribution in Xinjiang for 60 years based on literature database retrieval and historical data collection (January 1963-January 2023). The distribution data were extracted, corrected, and deduplicated. The dominant tick species were selected for analysis using the MaxEnt model to assess their potential distribution in different periods under the current and BCC-CSM2.MR mode scenarios. The results indicated that there are eight genera and 48 species of ticks in 108 cities and counties of Xinjiang, with Hyalomma asiaticum, Rhipicephalus turanicus, Dermacentor marginatus, and Haemaphysalis punctatus being the top four dominant species. The MaxEnt model analysis revealed that the suitability areas of the four dominant ticks were mainly distributed in the north of Xinjiang, in areas such as Altay and Tacheng Prefecture. Over the next four periods, the medium and high suitable areas within the potential distribution range of the four tick species will expand towards the northwest. Additionally, new suitability areas will emerge in Altay, Changji Hui Autonomous Region, and other local areas. The 60-year tick dataset in this study provides a map of preliminary tick distribution in Xinjiang, with a diverse array of tick species and distribution patterns throughout the area. In addition, the MaxEnt model revealed the spatial change characteristics and future distribution trend of ticks in Xinjiang, which can provide an instrumental data reference for tick monitoring and tick-borne disease risk prediction not only in the region but also in other countries participating in the Belt and Road Initiative. Author summary: Tick-borne diseases pose a significant threat to public health worldwide, and their spread is being intensified by global climate change. The need for further research into the spatial distribution and influencing factors of ticks is becoming increasingly urgent. Our study compiled a comprehensive 60-year dataset on tick species distribution in Xinjiang to analyze trends and predict future distributions. The study identified eight genera and 48 tick species across 108 cities and counties in Xinjiang, with Hyalomma asiaticum, Rhipicephalus turanicus, Dermacentor marginatus, and Haemaphysalis punctatus being the four dominant species. In addition, our study forecasts a northward expansion of suitable habitats for these species towards Altay and Tacheng Prefecture, with new suitability areas expected in Altay and the Changji Hui Autonomous Region. The findings of this study provide a crucial map of tick distribution and offer valuable insights into future trends, serving as a valuable resource for tick monitoring and disease risk prediction in Xinjiang, particularly in light of the devastating effects of tick-borne diseases on human health. [ABSTRACT FROM AUTHOR]

Fungi are among key actors in the biogeochemical processes occurring in mangrove ecosystems. In this study, we investigated the changes of fungal communities in selected mangrove species by exploring differences in diversity, structure and the degree of ecological rearrangement occurring within the rhizospheres of four mangrove species (Sonneratia alba, Rhizophora mucronata, Ceriops tagal and Avicennia marina) at Gazi Bay and Mida Creek in Kenya. Alpha diversity investigation revealed that there were no significant differences in species diversity between the same mangrove species in the different sites. Rather, significant differences were observed in fungal richness for some of the mangrove species. Chemical parameters of the mangrove sediment significantly correlated with fungal alpha diversity and inversely with richness. The fungal community structure was significantly differentiated by mangrove species, geographical location and chemical parameters. Taxonomic analysis revealed that 96% of the amplicon sequence variants belonged to the Phylum Ascomycota, followed by Basidiomycota (3%). Predictive FUNGuild and co-occurrence network analysis revealed that the fungal communities in Gazi Bay were metabolically more diverse compared to those of Mida Creek. Overall, our results demonstrate that anthropogenic activities influenced fungal richness, community assembly and their potential ecological functions in the mangrove ecosystems investigated. [ABSTRACT FROM AUTHOR]

A bacterial metabarcoding approach was used to compare the microbiome composition of caecal and faecal samples from fattening Japanese quails (Coturnix coturnix japonica) fed three different diet regimes. The tested feedstuffs included (1) a commercial diet for fattening quails, (2) a commercial diet containing 12% full-fat silkworm (Bombyx mori) pupae meal, and (3) a commercial diet containing 12% defatted silkworm pupae meal. The aim of the experiment was to verify the relative effect of three variables (diet type, gut tract comparing caecum to rectum, and individual animal) in determining the level of bacterial community dissimilarity to rank the relevance of each of the three factors in affecting and shaping community composition. To infer such ranking, the communities resulting from the high-throughput sequencing from each sample were used to calculate the Bray-Curtis distances in all the pairwise combinations, whereby identical communities would score 0 and totally different ones would yield the maximum distance, equal to 1. The results indicated that the main driver of divergence was the gut tract, as distances between caecal and faecal samples were higher on average, irrespective of diet composition, which scored second in rank, and of whether they had been sampled from the same individual, which was the least effective factor. Simpson's species diversity indexes was not significantly different when comparing tracts or diets, while community evenness was reduced in full-fat silkworm diet-fed animals. The identities of the differentially displayed taxa that were statistically significant as a function of gut tract and diet regimen are discussed in light of their known physiological and functional traits. [ABSTRACT FROM AUTHOR]

Monodominant tree communities can have phenotypic trait variation (intraspecific variation) as extreme as the trait variation across a forest with higher species diversity. An example of such forests is those composed of Quercus, an important genus of woody angiosperms in the montane neotropical forest. The Andean oak, or Quercus humboldtii Bonpl., is the sole member of this genus in South America and a characteristic component of montane ecosystems. Although there are several studies on the ecology and genetic structure of this species, there are few studies on the functional trait diversity among populations. Understanding functional traits can improve our comprehension of how organisms respond to various environmental conditions. In this study, we aimed to evaluate differences in six functional traits in individuals of the Andean oak, in two ontogenetic stages (juveniles and adults) from three populations with contrasting environmental conditions. Additionally, using T-statistics, we assessed the impact of external filters (e.g., climate, resource availability, large-scale biotic interactions) on population assembly. We found a remarkable level of functional differentiation among Andean oak forests, with all traits differing between populations and five traits differing between ontogenetic stages. External filters had a stronger influence in populations with more extreme environmental conditions. These findings emphasize the dynamic and context-dependent nature of functional traits in this species. However, given the limited exploration of functional diversity in Andean oak populations, further studies are needed to inform conservation efforts. [ABSTRACT FROM AUTHOR]

Climate changes have altered biodiversity and ultimately induced community changes that have threatened the survival of certain aquatic organisms such as fish species. Obtaining biological and genetic information on endangered fish species is critical for ecological population management. Thamnaconus multilineatus, registered as an endangered species by the IUCN in 2019, is a Data Deficient (DD) species with a remarkably small number of habitats worldwide and no known information other than its habitat and external form. In this study, we characterized the external and osteological morphology of a T. multilineatus specimen collected from eastern Jeju Island, South Korea, in 2020. We also investigated the phylogenetic relationships among related fish species through complete mitochondrial DNA (mtDNA) analysis of the T. multilineatus specimen. The external and skeletal characteristics of T. multilineatus were similar to those of previous reports describing other fish of the genus Thamnaconus, making it difficult to classify T. multilineatus as a similar species based only on morphological characteristics. As a result of analyzing the complete mtDNA of T. multilineatus, the length of the mtDNA was determined to be 16,435 bp, and the mitochondrial genome was found to have 37 CDCs, including 13 PCGs, 22 tRNAs, and 2 rRNAs. In the phylogenetic analysis within the suborder Balistoidei, T. multilineatus mtDNA formed a cluster with fish of the genus Thamnaconus. This study is the first to report on the skeletal structure and complete mtDNA of T. multilineatus. Since the current research on T. multilineatus has only been reported on morphology, the results of this study will be utilized as important information for the management and restoration of T. multilineatus as an endangered species and significant fishery resource. [ABSTRACT FROM AUTHOR]

This study presents the status and trends of long-term monitoring of the elemental concentrations of zinc (Zn), lead (Pb), and cadmium (Cd) in Hylocomium splendens moss tissue in Cape Krusenstern National Monument (CAKR), Alaska, adjacent to the Red Dog Mine haul road. Spatial patterns of the deposition of these metals were re-assessed for the period from 2006–2017 following an identical study that assessed trends between 2001–2006. In contrast to the widespread and steep declines in Zn and Pb levels throughout most of the study area between 2001–2006, this study showed more mixed results for 2006–2017. At distances within 100 m of the haul road, only Pb decreased between 2006–2017. At distances between 100–5,000 m, however, both Zn and Cd decreased between 2006–2017, with high probabilities of decrease and percent decreases of 11–20% and 46–52% respectively. Lead did not decrease in any of the more distant areas. Following earlier work on lichen species richness in the study area, it appears that 2017 Zn levels are approaching those associated with "background" lichen species richness throughout a relatively large proportion of the study area at least 2,000 m from the haul road and several km from the port site. The findings in this study may be used to plan additional mitigation measures to reduce Zn deposition related to impacts on lichen communities. [ABSTRACT FROM AUTHOR]

Green spaces can support human stress reduction and foster positive emotional well-being. Previous research has suggested that biodiversity (i.e. the variety of species of plants and animals in a given location) can enhance recovery from stress even further. However, there is limited experimental evidence testing this hypothesis and results, to date, have been mixed. This study aimed to provide further understanding of the role of biodiversity (actual or perceived) on human well-being by experimentally manipulating species richness and stress. Participants (372 in total) took part in an online experiment, where they received an episode of mild stress before watching a 360-degree video to recover. The video showed the same location, an urban woodland, but at one of four artificially manipulated levels of biodiversity. The participants reported their Positive and Negative Affect before and after the stress induction and after watching the video, providing a measure of their stress and well-being throughout the experiment. Participants also reported their perceptions of biodiversity (i.e. how diverse they thought the location was) and elaborated on their responses with brief comments. Repeated Measure Analysis of Variance revealed that exposure to all levels of biodiversity reduced the participants' Negative Affect, but with no significant difference between the conditions. However, the analysis showed higher Positive Affect in those participants who perceived the environment as more biodiverse. Comments from participants indicated that those who reported noticing flowers and trees in the environment also showed higher Positive Affect. This suggests that perceiving biodiversity promotes more positive emotions, but critically one needs to actually notice (engage with) the components of biodiversity to elicit these extra benefits. [ABSTRACT FROM AUTHOR]

Sand fly transmitted Leishmania species are responsible for severe, wide ranging, visceral and cutaneous leishmaniases. Genetic exchange can occur among natural Leishmania populations and hybrids can now be produced experimentally, with limitations. Feeding Phlebotomus orientalis or Phlebotomus argentipes on two strains of Leishmania donovani yielded hybrid progeny, selected using double drug resistance and fluorescence markers. Fluorescence activated cell sorting of cultured clones derived from these hybrids indicated diploid progeny. Multilocus sequence typing of the clones showed hybridisation and nuclear heterozygosity, although with inheritance of single haplotypes in a kinetoplastid target. Comparative genomics showed diversity of clonal progeny between single chromosomes, and extraordinary heterozygosity across all 36 chromosomes. Diversity between progeny was seen for the HASPB antigen, which has been noted previously as having implications for design of a therapeutic vaccine. Genomic diversity seen among Leishmania strains and hybrid progeny is of great importance in understanding the epidemiology and control of leishmaniasis. As an outcome of this study we strongly recommend that wider biological archives of different Leishmania species from endemic regions should be established and made available for comparative genomics. However, in parallel, performance of genetic crosses and genomic comparisons should give fundamental insight into the specificity, diversity and limitations of candidate diagnostics, vaccines and drugs, for targeted control of leishmaniasis. Author summary: Sand flies transmit Leishmania infections that cause devastating and potentially fatal infectious human diseases. The existence of genetic exchange between Leishmania populations has been proved in nature. We used laboratory techniques to create experimental hybrids comparable to those that arise in nature, and analysed the genomes of the resulting offspring. We found vast genetic exchange and diversity across all 36 Leishmania chromosomes of the hybrid (diploid) progeny. Genes that are involved in Leishmania parasite virulence may recombine into new forms that evade the human immune system. This genetic exchange was also shown to modify and disrupt candidate diagnostic antigens. [ABSTRACT FROM AUTHOR]

Peru ranks among the three countries with the highest bird species diversity globally and a majority of those species are found in the Peruvian Amazon. However, birds in this area are currently facing serious anthropogenic threats. Genetic and genomic methods are becoming important tools for avian biodiversity monitoring and conservation planning. Comprehensive molecular libraries that are publicly available are key to the effective deployment of these tools. We analyze the information gaps for four molecular markers in the most important genetic sequence databases, Barcode of Life Data Systems (BOLD) and NCBI GenBank, for bird species of the Peruvian Amazonia. We found that 64% of Peruvian Amazonian bird species have gene sequences for COI, 59.5% have CYTB sequences, 16.4% have 12S sequences, and only 0.6% have 18S sequences. However, these numbers decrease drastically to 4.3% for COI sequences when we only consider specimens sampled in Peru. Our data also showed that 43.8% of Peruvian Amazonian endemic species (n = 32) are missing sequences of any screened marker uploaded to GenBank or BOLD. Our results will encourage and guide efforts of the scientific community to complete reference libraries for Peruvian avian species that will be useful for future DNA-based monitoring projects that include birds. [ABSTRACT FROM AUTHOR]

Competition is ubiquitous in microbial communities, shaping both their spatial and temporal structure and composition. Classical minimal models of competition, such as the Moran model, have been employed in ecology and evolutionary biology to understand the role of fixation and invasion in the maintenance of population diversity. Informed by recent experimental studies of cellular competition in confined spaces, we extend the Moran model to incorporate mechanical interactions between cells that divide within the limited space of a one-dimensional open microchannel. The model characterizes the skewed collective growth of the cells dividing within the channel, causing cells to be expelled at the channel ends. The results of this spatial exclusion model differ significantly from those of its classical well-mixed counterpart. The mean time to fixation of a species is greatly accelerated, scaling logarithmically, rather than algebraically, with the system size, and fixation/extinction probability sharply depends on the species' initial fractional abundance. By contrast, successful takeovers by invasive species, whether through mutation or immigration, are substantially less likely than in the Moran model. We also find that the spatial exclusion tends to attenuate the effects of fitness differences on the fixation times and probabilities. We find that these effects arise from the combination of the quasi-neutral "tug-of-war" diffusion dynamics of the inter-species boundary around an unstable equipoise point and the quasi-deterministic avalanche dynamics away from the fixed point. These results, which can be tested in microfluidic monolayer devices, have implications for the maintenance of species diversity in dense bacterial and cellular ecosystems where spatial exclusion is central to the competition, such as in organized biofilms or intestinal crypts. Author summary: Competition for territory between different species has far reaching consequences for the diversity and fate of bacterial and other ecological communities. In this study, we theoretically and computationally study the competitive dynamics of two bacterial populations competing for space in one-dimensional confined environments, extending classical models that serve as paradigms for competitive dynamics but do not explicitly include spatial exclusion. We find that spatial effects can drastically change the population outcomes by changing the probabilities that one species excludes the other from the environment the mean times to such exclusion. In comparison to the predictions of population models that neglect spatial aspects of the competition, species with higher relative fitness differences are less heavily favoured to outcompete their rival species. Spatial exclusion also changes the system stability with respect to invasion: there is a reduction in the effectiveness of invader's ability to take over the population. Our results show that spatial exclusion has rich and repercussions on species dominance and the long-time composition of populations. These must be considered when trying to understand complex bacterial ecosystems such as biofilms and intestinal flora. [ABSTRACT FROM AUTHOR]

Different environmental and biological factors can originate and support different alternative life histories in different taxonomic groups. Likewise, these factors are important for the processes that assemble and structure communities. Amphibians, besides being highly susceptible to environmental conditions, have various reproductive strategies, such as the direct development of individuals. Several hypotheses have been raised about possible selective pressures related to the emergence of direct development in anurans, as well as the relationship between environmental characteristics and the occurrence of these species. Such investigations, however, have mainly focused on specific clades and/or regions. Here, we use structural equation modelling to investigate the relationships between different abiotic (temperature, precipitation, humidity, and terrain slope) and biotic (phylogenetic composition and functional diversity) factors and the proportion of species with direct development in 766 anuran communities of the Atlantic Forest, a biome with a vast diversity of anuran species and high environmental complexity. Anuran communities with higher proportions of direct developing species were found to be mainly influenced by low potential evapotranspiration, low temperature seasonality, and high functional diversity. Phylogenetic composition and terrain slope were also found to be important in determining the occurrence of these species in Atlantic Forest communities. These results show the importance of these factors in the structuring of these communities and provide important contributions to the knowledge of direct development in anurans. [ABSTRACT FROM AUTHOR]

Detailed information on plant community types, distribution, and their relationships with various environmental gradients is crucial for understanding forest dynamics and sustainable forest management because plant community types are influenced by various environmental factors. Thus, this study was conducted to investigate plant community types and species diversity in relation to various environmental gradients in Geramo Forest, which is a remnant forest in the western escarpment of the Rift Valley of Ethiopia. Vegetation data were collected in 96 nested plots (20 × 20 m2 and five 1 ×1 m2) laid systematically at a distance of 250 m along 16 line transects, which were laid 300 m apart. Environmental and disturbance variables were also collected from each main plot. Agglomerative hierarchical cluster analysis and Canonical correspondence analysis (CCA) with R software were used to identify plant community types and analyze the relationship between plant community types and environmental variables, respectively. The Shannon Wiener diversity index was used to compute species diversity among community types. Five significantly different (p ≤ 0.001) plant community types were identified. The CCA results showed that species diversity and community composition among different community types were significantly influenced by altitude, disturbance, soil organic carbon, slope, soil available phosphorus, and pH, which revealed the compounded effect of various environmental factors on species richness, diversity, and evenness among plant community types. The study also identified a significant level of anthropogenic disturbance and a strong reliance of the local community on the forest in the research area. Therefore, it is recommended that sustainable forest conservation interventions be implemented through awareness creation and the promotion of community-based approaches. [ABSTRACT FROM AUTHOR]

Climate change is likely to imperil native biodiversity through the increased frequency of extreme events. Here we address the short-term effects of an extreme flooding event on an unplowed prairie reserve, the Faville Prairie Wisconsin State Natural Area. This 25-ha property is a remnant of the formerly extensive Crawfish Prairie that lay on the east bank of the Crawfish River, Jefferson County, Wisconsin USA. The Faville remnant has historically been subject to late winter to spring flooding in its lower portions. In June of 2008, however, an extreme rainfall event caused flooding unprecedented in the 87-year history of streamflow, inundating the entire site. Data were available from 180 permanently marked plots sampled in 1978–79. We assessed the change by resampling these plots in 2010–2015. At the m2 scale, we found significant losses of species richness, a result of most species having fewer occurrences than in the earlier data. There was near extinction of several important prairie species and a relative increase in wetland tolerant species. Lower elevation plots, subject to the encroachment of woody plants and the invasion of Phalaris arundinacea for decades prior to the flood, had the lowest levels of species richness. However, some prairie species survived the flooding with little change, and recent anecdotal observations show that others are rebuilding their populations. Thus, if extreme floods are infrequent, the prairie should be able to recover to its former state. If, however, the hydrological regime shifts toward more frequent, growing-season floods, we predict further decline in those plant species that were the object of the preservation of this remnant. It is critical that fire management continue along with monitoring to track species' recovery or replacement, so that corrective measures can be identified and tested to sustain the native prairie species diversity. [ABSTRACT FROM AUTHOR]

Kuwaiti territorial waters of the northwest Arabian Gulf represent a unique aquatic ecosystem prone to various environmental and anthropogenic stressors that pose significant constraints on the resident biota which must withstand extreme temperatures, salinity levels, and reducing conditions, among other factors to survive. Such conditions create the ideal environment for investigations into novel functional genetic adaptations of resident organisms. Firstly, however, it is essential to identify said organisms and understand the dynamic nature of their existence. Thus, this study provides the first comprehensive analysis of bacterial and archaeal community structures in the unique waters of Kuwait located in the Northwest Arabian Gulf and analyzes their variations with respect to depth, season, and location, as well as their susceptibility to changes in abundance with respect to various physicochemical parameters. Importantly, this study is the first of its kind to utilize a shotgun metagenomics approach with sequencing performed at an average depth of 15 million paired end reads per sample, which allows for species-level community profiling and sets the framework for future functional genomic investigations. Results showed an approximately even abundance of both archaeal (42.9%) and bacterial (57.1%) communities, but significantly greater diversity among the bacterial population, which predominantly consisted of members of the Proteobacteria, Cyanobacteria, and Bacteroidetes phyla in decreasing order of abundance. Little to no significant variations as assessed by various metrics including alpha and beta diversity analyses were observed in the abundance of archaeal and bacterial populations with respect to depth down the water column. Furthermore, although variations in differential abundance of key genera were detected at each of the three sampling locations, measurements of species richness and evenness revealed negligible variation (ANOVA p<0.05) and only a moderately defined community structure (ANOSIM r2 = 0.243; p>0.001) between the various locations. Interestingly, abundance of archaeal community members showed a significant increase (log2 median ratio of RA = 2.6) while the bacterial population showed a significant decrease (log2 median ratio = -1.29) in the winter season. These findings were supported by alpha and beta diversity analyses as well (ANOSIM r2 = 0.253; p>0.01). Overall, this study provides the first in-depth analysis of both bacterial and archaeal community structures developed using a shotgun metagenomic approach in the waters of the Northwest Arabian Gulf thus providing a framework for future investigations of functional genetic adaptations developed by resident biota attempting to survive in the uniquely extreme conditions to which they are exposed. [ABSTRACT FROM AUTHOR]

Background: Halving snakebite morbidity and mortality by 2030 requires countries to develop both prevention and treatment strategies. The paucity of data on the global incidence and severity of snakebite envenoming causes challenges prioritizing and mobilising resources for snakebite prevention and treatment. In line with the World Health Organisation's 2019 Snakebite Strategy, this study sought to investigate Eswatini's snakebite epidemiology and outcomes, and identify the socio-geographical factors associated with snakebite risk. Methodology: Programmatic data from the Ministry of Health, Government of Eswatini 2019–2021, was used to assess the epidemiology and outcomes of snakebite in Eswatini. We developed a snake species richness map from the occurrence data of all venomous snakes of medical importance in Eswatini that was subjected to niche modelling. We formulated four risk indices using snake species richness, various geospatial datasets and reported snakebites. A multivariate cluster modelling approach using these indices was developed to estimate risk of snakebite and the outcomes of snakebite in Eswatini. Principal findings: An average of 466 snakebites was recorded annually in Eswatini. Bites were recorded across the entire country and peaked in the evening during summer months. Two cluster risk maps indicated areas of the country with a high probability of snakebite and a high probability of poor snakebite outcomes. The areas with the highest rate of snakebite risk were primarily in the rural and agricultural regions of the country. Significance: These models can be used to inform better snakebite prevention and treatment measures to enable Eswatini to meet the global goal of reducing snakebite morbidity and mortality by 50% by 2030. The supply chain challenges of antivenom affecting southern Africa and the high rates of snakebite identified in our study highlight the need for improved snakebite prevention and treatment tools that can be employed by health care workers stationed at rural, community clinics. Author summary: Snakebite from venomous snakes is a medical emergency requiring immediate critical care by a medical team. Failure to correctly manage a snakebite can lead to permanent disability or even death. The dearth of data on the frequency, location and populations affected by snakebite, as well as the outcomes of snakebite, in many regions of the world means that this tropical disease remains one of the most neglected. We studied snakebite over two years in Eswatini using data on hospitalisations, snake locations, habitat, environmental and socioeconomic factors to develop two nation-wide risk maps: one estimating the probability of snakebite and the other one the probability of poor outcomes in the case of a snakebite. The results of this study can enable national policy makers and health programmes to better plan and allocate resources, as well as implement targeted prevention strategies to meet the global goal of halving deaths and disabilities caused by snakebite envenoming. [ABSTRACT FROM AUTHOR]

There has been a recent exponential growth in the study of functional trait ecology. Nonetheless, the study of functional traits and functional groups has been limited for terrestrial vertebrates. We conducted a classification update of functional groups (FG) of birds and mammals in Mexico, and determined the distribution patterns of FG species richness in different ecosystems nationwide. We selected six functional traits (feeding habit, locomotion, feeding substrate and technique, activity period, seasonality, and body size) obtained for 987 and 496 species of birds and mammals, respectively. A cophenetic correlation analyses resulted in values of 0.82 for the bird species dendrogram, and 0.79 for the mammal species dendrogram showing that the structures adequately reflected the similarity between observations. We obtained 52 FG for birds, assembled into 9 broader groups based on their feeding habits (16 invertivores, 6 carnivores: 5 herbivores, 9 aquatic vertivore/invertivore, 5 granivores, 1 scavenger, 3 nectarivores, 4 frugivores, and 3 omnivores). We obtained 35 FG for mammals, assembled into 9 broader groups based on their feeding habits (4 granivores, 10 herbivores, 1 nectarivore, 4 frugivores, 8 invertivores, 3 omnivores, 2 aquatic vertivore/invertivore, 1 hematophagous, and 2 carnivores). Overall, the distribution of FG species richness for birds and mammals gradually increased from the Nearctic to the Neotropical region, following a typical latitudinal species richness pattern. Few FG of migratory birds, and FG of granivore and herbivore mammals showed more species in the Nearctic and in the transitional regions. Our study provides a baseline for identifying ecological functions of species of birds and mammals in different ecosystems in Mexico, and contributes to understand the relationship between species diversity, community structure and ecosystem functioning. Identifying spatial patterns of functional trait diversity is important as biodiversity loss has a negative impact on ecosystem functioning and provision of environmental services. [ABSTRACT FROM AUTHOR]