1. Genome-Wide Association Analysis for Liveweight Traits in Braunvieh Cattle
- Author
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Rafael Núñez-Domínguez, Francisco Joel Jahuey-Martínez, Rodolfo Ramírez-Valverde, Agustín Ruíz-Flores, Gaspar Manuel Parra-Bracamonte, and José Luis Zepeda-Batista
- Subjects
Genetics ,Braunvieh cattle ,Genome-Wide Association Analysis ,Biology - Abstract
A genome-wide association study (GWAS) for liveweight traits of Braunvieh cattle was performed. The study included 300 genotyped animals by the GeneSeek® Genomic Profiler Bovine LDv.4 panel; after quality control, 22,734 SNP and 276 animals were maintained in the analysis. The examined phenotypic data considered birth, weaning, and yearling weights. The association analysis was performed using the principal components method via the egscore function of the GenABEL version 1.8-0 package in the R environment. The marker rs133262280 located in BTA 22 was associated with birth weight, and two SNPs were associated with weaning weight, rs43668789 (BTA 11) and rs136155567 (BTA 27). New QTL associated with these liveweight traits and four positional and functional candidate genes potentially involved in variations of the analyzed traits were identified. The most important genes in these genomic regions were MCM2 (minichromosome maintenance complex component 2), TPRA1 (transmembrane protein adipocyte associated 1), GALM (galactose mutarotase), and NRG1 (neuregulin 1), with relationships with embryonic cleavage, bone and tissue growth, cell adhesion, and organic development. This study is the first to present a GWAS conducted in Braunvieh cattle in Mexico and represents a basis for future research. Further analyses of found associated regions will clarify its contribution to the genetic basis of growth-related traits.
- Published
- 2021
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