7 results on '"Antonio G. Ferreira"'
Search Results
2. Solution-state conformations of natural products from chiroptical spectroscopy: the case of isocorilagin
- Author
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J. M. Batista Junior, Sérgio Scherrer Thomasi, Antonio G. Ferreira, Quezia B. Cass, and Ricardo da Fontoura Sprenger
- Subjects
Circular dichroism ,Magnetic Resonance Spectroscopy ,Anomer ,Stereochemistry ,Molecular Conformation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Computational chemistry ,Dimethyl Sulfoxide ,Physical and Theoretical Chemistry ,Spectroscopy ,Coupling constant ,Biological Products ,010405 organic chemistry ,Circular Dichroism ,Organic Chemistry ,Diastereomer ,Nuclear magnetic resonance spectroscopy ,Isocorilagin ,0104 chemical sciences ,Solutions ,chemistry ,Quantum Theory ,Tannins ,Corilagin - Abstract
Isocorilagin, the α-anomer of the ellagitannin corilagin, has been frequently reported in the literature as a constituent of various plant species. Its identification is based mainly on the smaller value for the coupling constant of its anomeric proton when compared to that of corilagin. A careful investigation of the corilagin structure in both methanol and DMSO solutions using NMR, electronic and vibrational CD, and DFT and MD calculations confirmed that isocorilagin is the result of a solvent-induced conformational transition of corilagin, rather than its diastereoisomer. Corilagin changes from B1,4 and (o)S5 conformations of the β-glucose core in DMSO-d6 to an inverted (1)C4 conformation in methanol-d4, which accounts for NMR observables attributed to the alleged α-anomer. This misassignment reinforces the risks of relying upon a single technique for structural elucidation and stereochemical analysis of complex natural products, especially those containing saccharide moieties.
- Published
- 2016
3. Evaluation of binding competition and group epitopes of acetylcholinesterase inhibitors by STD NMR, Tr-NOESY, DOSY and molecular docking: an old approach but new findings
- Author
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Zaheer Ul-Haq, Sana Gul, Sheraz A. K. Tanoli, Antonio G. Ferreira, and Nazish U. Tanoli
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Pharmacology ,Stereochemistry ,Organic Chemistry ,Binding energy ,Rational design ,Pharmaceutical Science ,Binding potential ,Biochemistry ,Dissociation constant ,chemistry.chemical_compound ,chemistry ,Docking (molecular) ,Drug Discovery ,Molecular Medicine ,Gallic acid ,Binding site ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
Acetylcholinesterase is an important enzyme, currently used as therapy for controlling the effects of Alzheimer's disease that has been accepted as one of the major threats to the elderly population. In this perspective, NMR-based binding studies were performed to probe the interligand binding competition and the inhibition potential aiming at a selected target. In the ligand recognition assay, the acetylcholinesterase–inhibitor complex was also validated through a site-specific inhibitor, gallic acid—a known competitive inhibitor. The STD competition experiments demonstrated that both inhibitors did not compete with gallic acid for the particular binding site. However, in competition STD experiments, the order of binding potential has also been calculated, which ranked gallic acid at the highest with 157 μM and 4-methylumbelliferone at the lowest with 165 μM KD value. Moreover, binding conformations and diffusion coefficients were calculated by using Tr-NOESY and DOSY, respectively. Finally, the dissociation constant (KD) information from DOSY was also calculated, which interestingly mimics exactly the pattern of the earlier STD-titration result. Following these NMR outcomes, docking simulations were applied and gallic acid was found as the second potent inhibitor with −5.0195 kcal mol−1 after 4-methylumbelliferone with a −5.4894 kcal mol−1 binding energy. From these realistic NMR results and theoretical docking approach, we envisioned that the utilized molecular scaffolds or their extensions might be used in the control of Alzheimer's disease. Moreover, these scaffolds could also be helpful in generating the rational design of some novel inhibitors with increased potency and even greater specificity.
- Published
- 2015
4. Human serum albumin-specific recognition of the natural herbal extract of Stryphnodendron polyphyllum through STD NMR, hyphenations and docking simulation studies
- Author
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João B. Fernandes, Sheraz A. K. Tanoli, Saman Usmani, Nazish U. Tanoli, Zaheer Ul-Haq, Tatiani M. Bondancia, Antonio G. Ferreira, and Sérgio Scherrer Thomasi
- Subjects
biology ,Chemistry ,Stereochemistry ,General Chemical Engineering ,Stryphnodendron polyphyllum ,Binding potential ,Active site ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Human serum albumin ,Combinatorial chemistry ,Epitope ,Docking (molecular) ,biology.protein ,medicine ,Macromolecule ,medicine.drug - Abstract
Over the last two decades, new and more advanced strategies that help in the rapid screening and identification of new ligands for a specific macromolecule have become an important domain. From this viewpoint, the effectiveness of STD NMR, Tr-NOESY, and STD-TOCSY has been utilized to evaluate the binding potential of the natural extract of Stryphnodendron polyphyllum, used as a herbal medicine in Brazil, towards human serum albumin. Moreover, 1D-DOSY experiments have also been carried out for the discriminations of different molecular weight compounds present in this extract. Following the STD, Tr-NOESY, and TOCSY analysis, a hyphenated system comprising LC-SPE-NMR was utilized to see the complete structural assignments through 2D spectra. The combined results from NMR spectroscopy and separation methods provided myricetin-3-O-rhamnopyranoside (1), quercetin-3-O-glucopyranoside (2), quercetin-3-O-xylopyranoside (3), and quercetin-3-O-rhamnopyranoside (4) as the active site blockers. Moreover, epitope results and additional Tr-NOESY cross peaks suggested the presence of the flattened conformations of these ligands within the ligand–HSA complex through the edge protons. Similarly, STD competition studies with the ligand–HSA complex were demonstrated by varying the concentration of spy molecule that selectively binds with Sudlow's site II. Finally, docking simulations targeting both Sudlow sites (I and II) were performed, which interestingly mimic the STD competition results and showed that these compounds (1–4) are more prone towards binding site-1 inhibition. Therefore, we suggest that the sequence of techniques presented in this study can be considered as a simple and fast analytical tool for screening natural extracts to get better leads against any specific target.
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- 2015
5. Crude to leads: a triple-pronged direct NMR approach in coordination with docking simulation
- Author
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Nazish U. Tanoli, Zaheer Ul-Haq, Antonio G. Ferreira, Saman Usmani, Sheraz A. K. Tanoli, João B. Fernandes, Tatiani M. Bondancia, and Rainer Kerssebaum
- Subjects
Magnetic Resonance Spectroscopy ,Natural product ,biology ,Protein Conformation ,Drug discovery ,Serum Albumin, Bovine ,Biological activity ,Biochemistry ,Combinatorial chemistry ,Analytical Chemistry ,Molecular Docking Simulation ,chemistry.chemical_compound ,Epitope mapping ,chemistry ,Active compound ,Docking (molecular) ,Electrochemistry ,biology.protein ,Screening method ,Animals ,Environmental Chemistry ,Cattle ,Bovine serum albumin ,Spectroscopy - Abstract
The screening of compounds that bind to the target of interest (specific proteins) plays a vital role in drug discovery. Usually, the identification of biologically active compounds is done from a library of structurally known compounds. However, we successfully illustrate here, that NMR techniques including saturation transfer difference (STD), transfer nuclear Overhauser spectroscopy (TrNOESY) and STD-TOCSY (total correlation spectroscopy) in combination with separation methods not only enable the rapid and comprehensive screening of active components, but also their unequivocal structural characterization. Furthermore, a time saving for the recognition of leads is also possible with this application. To probe the binding studies, a hydroethanolic fraction of crude extract (1 mg) from natural product (Rauia resinous) was used for the initial assessment with BSA protein. The docking simulation was performed with BSA in the region of Thr190, Arg198, Arg217, Trp213, Arg256, Ala290 and Tyr451 to further refine the active compound towards the leads. Docking results mimic binding as identified by STD, Tr-NOESY and STD-TOCSY. Isovetexine-2-rhamnosoide (2) was found to be most active through group epitope mapping results as well as the docking simulation with relative free energy of -7.2770. This experiment provided excellent results through the direct NMR screening method. Using Bovine Serum Albumin as a reference, we illustrate that this approach offers an excellent way for the first hand detection of the active constituents/inhibitors from natural remedies used in folk medicinal treatments.
- Published
- 2013
6. Real-time separation of natural products by ultrafast 2D NMR coupled to on-line HPLC
- Author
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Luiz Henrique Keng Queiroz Júnior, Darlene P. K. Queiroz, Antonio G. Ferreira, Patrick Giraudeau, and Liene Dhooghe
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Biological Products ,Analyte ,Magnetic Resonance Spectroscopy ,Chemistry ,Elution ,Analytical chemistry ,Biochemistry ,High-performance liquid chromatography ,Catechin ,Analytical Chemistry ,Time separation ,Flavanones ,Line (geometry) ,Electrochemistry ,Environmental Chemistry ,Chromatographic column ,Two-dimensional nuclear magnetic resonance spectroscopy ,Ultrashort pulse ,Chromatography, High Pressure Liquid ,Spectroscopy - Abstract
Hyphenated HPLC-NMR is an extremely efficient analytical tool, which makes it possible to perform on-flow experiments where 1D NMR spectra are obtained in real time as the analytes are separated and eluted from the chromatographic column. However, it is incompatible with multidimensional NMR methods that form an indispensible tool for the study of complex mixtures. Recently, Frydman and co-workers have proposed an ultrafast 2D NMR approach, where a complete 2D NMR correlation can be recorded in a single scan, thus providing a solution to the irreversibility of hyphenated techniques. This paper presents the first implementation of on-line ultrafast HPLC-NMR. Ultrafast COSY spectra are acquired every 12 s in the course of a chromatographic run performed on a mixture of natural aromatic compounds. The results, obtained on a commercial HPLC-NMR setup, highlight the generality of the ultrafast HPLC-NMR methodology, thus opening the way to a number of applications in the numerous fields in which HPLC-NMR forms a routine analytical tool.
- Published
- 2012
7. Nitrosyl induces phosphorous-acid dissociation in ruthenium(ii)
- Author
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Daniela R. Truzzi, Douglas Wagner Franco, Antonio G. Ferreira, Sebastião C. da Silva, Francisco das Chagas Alves Lima, and Eduardo E. Castellano
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Chemistry ,Stereochemistry ,MOLÉCULA (SÍNTESE) ,Ab initio ,chemistry.chemical_element ,Medicinal chemistry ,Dissociation (chemistry) ,Ruthenium ,Inorganic Chemistry ,chemistry.chemical_compound ,Deprotonation ,Moiety ,Cyclic voltammetry ,Linkage isomerism ,Phosphorous acid - Abstract
The trans-[Ru(NO)(NH(3))(4)(P(OH)(3))]Cl(3) complex was synthesized by reacting [Ru(H(2)O)(NH(3))(5)](2+) with H(3)PO(3) and characterized by spectroscopic ((31)P-NMR, δ = 68 ppm) and spectrophotometric techniques (λ = 525 nm, ε = 20 L mol(-1) cm(-1); λ = 319 nm, ε = 773 L mol(-1) cm(-1); λ = 241 nm, ε = 1385 L mol(-1) cm(-1); ν(NO(+)) = 1879 cm(-1)). A pK(a) of 0.74 was determined from infrared measurements as a function of pH for the reaction: trans-[Ru(NO)(NH(3))(4)(P(OH)(3))](3+) + H(2)O ⇌ trans-[Ru(NO)(NH(3))(4)(P(O(-))(OH)(2))](2+) + H(3)O(+). According to (31)P-NMR, IR, UV-vis, cyclic voltammetry and ab initio calculation data, upon deprotonation, trans-[Ru(NO)(NH(3))(4)(P(OH)(3))](3+) yields the O-bonded linkage isomer trans- [Ru(NO)(NH(3))(4)(OP(OH)(2))](2+), then the trans-[Ru(NO)(NH(3))(4)(OP(H)(OH)(2))](3+) decays to give the final products H(3)PO(3) and trans-[Ru(NO)(NH(3))(4)(H(2)O)](3+). The dissociation of phosphorous acid from the [Ru(NO)(NH(3))(4)](3+) moiety is pH dependent (k(obs) = 2.1 × 10(-4) s(-1) at pH 3.0, 25 °C).
- Published
- 2011
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