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Subnival glasshouse plants provide a text-book example of high-altitude adaptation with reproductive organs enclosed in specialized semi-translucent bracts, monocarpic reproduction and continuous survival under stress. Here, we present genomic, transcriptomic and metabolomic analyses for one such plant, the Noble rhubarb (Rheum nobile). Comparative genomic analyses show that an expanded number of genes and retained genes from two recent whole-genome duplication events are both relevant to subnival adaptation of this species. Most photosynthesis genes are downregulated within bracts compared to within leaves, and indeed bracts exhibit a sharp reduction in photosynthetic pigments, indicating that the bracts no longer perform photosynthesis. Contrastingly, genes related to flavonol synthesis are upregulated, providing enhanced defense against UV irradiation damage. Additionally, anatomically abnormal mesophyll combined with the downregulation of genes related to mesophyll differentiation in bracts illustrates the innovation and specification of the glass-like bracts. We further detect substantial accumulation of antifreeze proteins (e.g. AFPs, LEAs) and various metabolites (e.g. Proline, Protective sugars, procyanidins) in over-wintering roots. These findings provide new insights into subnival adaptation and the evolution of glasshouse alpine plants. A chromosome-level genome assembly for the glasshouse plant Rheum nobile (noble rhubarb) combined with phylogenetic, transcriptomic, and metabolomic analyses provides insight into how alpine plants have adapted to growth in extreme environments. [ABSTRACT FROM AUTHOR]

The Kobresia pastures of the Tibetan Plateau represent the world's largest alpine grassland ecosystem. These pastures remained stable during the last millennia of nomadic animal husbandry. However, strongly increased herds' density has promoted overgrazing, with unclear consequences for vegetation and soils, particularly for cycles of carbon (C), nutrients and water. Vegetation-free patches of dead root-mat covered by blue-green algae and crustose lichens (crusts) are common in overgrazed Kobresia pastures, but their effect on C turnover processes is completely unknown. We tested the hypothesis that the crusts strongly affect the C cycle by examining: (i) the long-term C stock measured as soil organic matter content; (ii) medium-term C stock as dead roots; (iii) recent C fluxes analyzed as living roots and CO efflux; and (iv) fast decomposition of root exudates. Up to 7.5 times less aboveground and 1.9 times less belowground living biomass were found in crust patches, reflecting a much smaller C input to soil as compared with the non-crust Kobresia patches. A lower C input initially changed the long-term C stock under crusts in the upper root-mat horizon. Linear regression between living roots and CO efflux showed that roots contributed 23% to total CO under non-crust areas (mean July-August 5.4 g C m day) and 18% under crusts (5.1 g C m day). To identify differences in the fast turnover processes in soil, we added C labeled glucose, glycine and acetic acid, representing the three main groups of root exudates. The decomposition rates of glucose (0.7 day), glycine (1.5 day) and acetic acid (1.2 day) did not differ under crusts and non-crusts. More C, however, remained in soil under crusts, reflecting less complete decomposition of exudates and less root uptake. This shows that the crust patches decrease the rates of medium-term C turnover in response to the much lower C input. Very high C amounts recovered in plants from non-crust areas as well as the two times lower uptake by roots under crusts indicate that very dense roots are efficient competitors with microorganisms for soluble organics. In conclusion, the altered C cycle in the overgrazing-induced crustose lichens and blue-green algae crusts is connected with strongly decreased C input and reduced medium-term C turnover. [ABSTRACT FROM AUTHOR]

This paper provides information about the distribution, structure, and ecology of the world's largest alpine ecosystem, the Kobresia pygmaea pastures in the southeastern Tibetan plateau. The environmental importance of these Cyperaceae mats derives from the extremely firm turf, which protects large surfaces against erosion, including the headwaters of the Huang He, Yangtze, Mekong, Salween, and Brahmaputra. The emphasis of the present article is on the climate-driven evolution and recent dynamics of these mats under the grazing impact of small mammals and livestock. Considering pedological analyses, radiocarbon datings, and results from exclosure experiments, we hypothesize that the majority of K. pygmaea mats are human-induced and replace forests, scrub, and taller grasslands. At present, the carrying capacity is increasingly exceeded, and reinforced settlement of nomads threatens this ecosystem especially in its drier part, where small mammals become strong competitors with livestock and the removal of the turf is irreversible. Examples of rehabilitation measures are given. [ABSTRACT FROM AUTHOR]