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Peak river flows transport fine sediment, nutrients, and contaminants that may deposit in the estuary. This study explores the importance of peak river flows on sediment dynamics with special emphasis on channel network configurations. The Sacramento-San Joaquin Delta, which is connected to San Francisco Bay (California, USA), motivates this study and is used as a validation case. Besides data analysis of observations, we applied a calibrated process-based model (D-Flow FM) to explore and analyze high-resolution (∼100 m, ∼1 h) dynamics. Peak river flows supply the vast majority of sediment into the system. Data analysis of six peak flows (between 2012 and 2014) shows that on average, 40 % of the input sediment in the system is trapped and that trapping efficiency depends on timing and magnitude of river flows. The model has 90 % accuracy reproducing these trapping efficiencies. Modeled deposition patterns develop as the result of peak river flows after which, during low river flow conditions, tidal currents are not able to significantly redistribute deposited sediment. Deposition is quite local and mainly takes place at a deep junction. Tidal movement is important for sediment resuspension, but river induced, tide residual currents are responsible for redistributing the sediment towards the river banks and to the bay. We applied the same forcing for four different channel configurations ranging from a full delta network to a schematization of the main river. A higher degree of network schematization leads to higher peak-sediment export downstream to the bay. However, the area of sedimentation is similar for all the configurations because it is mostly driven by geometry and bathymetry. [ABSTRACT FROM AUTHOR]