1. Case study of a neuroendocrine tumor of uncertain origin: single-cell transcriptomics unravels potential primary location.
- Author
-
Tatyana, Frolova, Avsievich, Ekaterina, Salimgereeva, Diana, Antysheva, Zoia, Maluchenko, Alesia, Maksimov, Denis, Feidorov, Ilia, Voloshin, Mark, Glazova, Olga, Bodunova, Natalia, Karnaukhov, Nikolay, Volchkov, Pavel, and Krupinova, Julia
- Abstract
Purpose: Determining the primary origin of non-organ-confined neuroendocrine tumors (NETs) for accurate diagnosis and management. Neuroendocrine tumors are rare neoplasms with diverse clinical behaviors. Determining their primary origin remains challenging in cases of non-organ-confined NETs. This study explores the histogenesis of a retroperitoneal, non-functional NET localized between the duodenum and pancreatic head, utilizing advanced molecular diagnostics to elucidate its probable primary source. Methods: Initial diagnostic methods, including imaging and histopathology, failed to resolve the tumor’s origin. The tumor was subjected to single-cell RNA sequencing (scRNA-seq) and whole exome sequencing (WES). Publicly available transcriptomic datasets from pancreatic and small intestine NETs were used to develop and validate a molecular gene signature for tissue-of-origin identification. Results: The gene signature distinguished pancreatic and small intestine NETs with high accuracy. The tumor cells presented a molecular profile consistent with a pancreatic origin, likely derived from ectopic pancreatic tissue. Conclusions: This case demonstrates the value of integrating scRNA-seq and WES for the molecular characterization of complex NETs. Identifying the tumor’s pancreatic origin informed a targeted management approach, avoiding unnecessary systemic treatment and underscoring the potential of single-cell approaches in personalized oncology. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF