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The Second International Symposium on Research and Management of Eutrophication in Coastal Ecosystems took place 20–23 June 2006 in Nyborg, Denmark. The Symposium was attended by more than 200 persons with a specific interest in eutrophication processes as well as a common interest in science-based management and implementation of nutrient reduction strategies. More than 120 oral presentations were made, mostly focussing on both science and management of nutrient enrichment and eutrophication. The papers in this Special Issue of Hydrobiologia are all based on presentations made at the Symposium.

We report the development of a prototype tool for modeling the risks of spreading of non-indigenous invasive species via ballast water. The tool constitutes of two types of models: a 3D hydrodynamical model calculates the currents in the North Sea and Danish Straits, and an agent-based model estimates the dispersal of selected model organisms with the prevailing currents calculated by the 3D hydrodynamical model. The analysis is concluded by a postprocessing activity, where scenarios of dispersal are combined into an interim estimate of connectivity within the study area. The latter can be used for assessment of potential risk associated with intentional or unintentional discharges of ballast water. We discuss how this prototype tool can be used for ballast water risk management and outline other functions and uses, e.g., in regard to ecosystem-based management and the implementation of the EU Marine Strategy Framework Directive.