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The aim of this study was to survey marine Actinomycetia (former class Actinobacteria) from nearshore sediments in Kaohsiung Harbor and deep-sea sediments in the Bashi Channel, and to screen them for their abilities to produce metabolites with antimicrobial and cytotoxic activities. A total of 811 actinomycetes were isolated from six marine sediment samples; 70 isolates (8.63%) showed antimicrobial activity using the agar plug method against at least one of two test strains of Bacillus subtilis and Staphylococcus aureus. Twenty-two isolates that displayed high antimicrobial activity were selected for 16S rDNA sequencing and seawater requirement assays. Phylogenetic analysis of the sequences indicated that these isolates were members of the Streptomycetaceae family (1 isolate) and five actinomycete genera: Streptomyces (15), Actinoalloteichus (2), Saccharomonospora (2), Saccharopolyspora (1), and Nocardiopsis (1). Significantly different actinomycete populations were found in the nearshore and deep-sea sediments. Fourteen isolates (63.6%) were found to be obligate marine bacteria, and 2 (9.1%) isolates showed better growth in the presence of seawater. Two isolates, BC01-N-GI05 and BC01-N-MA22, which exhibited antimicrobial activity against at least four test microorganisms as well as strong cytotoxicity (IC50 ≤ 1 μg/mL) against at least two cancer cell lines, were deemed good candidates for further natural product isolation and characterization of bioactive components. Our results suggest that marine sediments from Kaohsiung Harbor and the Bashi Channel could be promising sources of antibiotic-producing Actinomycetia. [ABSTRACT FROM AUTHOR]

To investigate soil microbial community dynamics in sediment microbial fuel cells (MFCs), this study applied nonhydric (D) and hydric (S) soils to single-chamber and mediator-free MFCs. Glucose was also used to enrich microorganisms in the soils. The voltage outputs of both the D and S sediment MFCs increased over time but differed from each other. The initial open circuit potentials were 345 and 264 mV for the D and S MFCs. The voltage output reached a maximum of 503 and 604 mV for D and S on days 125 and 131, respectively. The maximum power densities of the D and S MFCs were 2.74 and 2.12 mW m−2, analyzed on day 50. Clustering results revealed that the two groups did not cluster after glucose supplementation and 126 days of MFC function. The change in Geobacter abundance was consistent with the voltage output, indicating that these bacteria may act as the main exoelectrogens on the anode. Spearman correlation analysis demonstrated that, in the D soils, Geobacter was positively correlated with Dialister and negatively correlated with Bradyrhizobium, Kaistobacter, Pedomicrobium, and Phascolarctobacterium; in the S soils, Geobacter was positively correlated with Shewanella and negatively correlated with Blautia. The results suggested that different soil sources in the MFCs and the addition of glucose as a nutrient produced diverse microbial communities with varying voltage output efficiencies. [ABSTRACT FROM AUTHOR]

Fungal endophytes have been found to exist in many plant species and appear to be important to their plant hosts. However, the diversity and biological activities of these fungi remain largely unknown. Zanthoxylum simulans Hance, a popular natural spice and medicinal plant, commonly known as Szechuan pepper or Chinese-pepper, grows on Kinmen Island, Taiwan. In this study, leaf and stem samples of Z. simulans, collected in summer and winter, were screened for antimicrobial and anti-inflammatory metabolite-producing endophytic fungi. A total of 113 endophytic strains were isolated and cultured from Z. simulans, among which 23 were found to possess antimicrobial activity, belonging to six fungal genera: Penicillium (26.09%, 6), Colletotrichum (21.74%, 5), Diaporthe (21.74%, 5), Daldinia (17.39%, 4), Alternaria (8.70%, 2), and Didymella (4.34%, 1). We also found that the number of species with antimicrobial activity and their compositions differed between summer and winter. Our study demonstrated that Z. simulans might contain large and diverse communities of endophytic fungi, and its community composition varies seasonally. In addition, fungal endophytes produce antimicrobial agents, which may protect their hosts against pathogens and could be a potential source of natural antibiotics. [ABSTRACT FROM AUTHOR]

Paclobutrazol, (2RS, 3RS)-1-(4-chlorophenyl)-4, 4-dimethyl-2-(1H-1,2,4-triazol-1-yl) pentan-3-ol, is a plant growth retardant that mainly inhibits gibberellins (GAs) biosynthesis. In agricultural practice, paclobutrazol is applied to arrest vegetative growth so as to increase the reproductive growth of many orchard fruit, as well as grain crops. However, due to its over-application and chemical stability, paclobutrazol accumulates in soil and inhibits the growth of subsequent crops, especially those grown for vegetative purposes. The present study focused mainly on the changes in the soil bacterial community following application of paclobutrazol. Mung bean (Vigna radiata) plants were treated with paclobutrazol and cultivated for three consecutive seasons. Soil samples were collected and analyzed by denaturing gradient gel electrophoresis (DGGE) using 16S rDNA gene fragments and clone library analyses. The results obtained through clustering and clonal sequencing analysis showed that the bacterial community was affected by paclobutrazol, and in addition, was more diverse in the third stage of mung bean plant cultivation. The results of the study showed that paclobutrazol affected bacterial composition, and the population of bacteria varied greatly across time. [ABSTRACT FROM AUTHOR]

Two pennate diatoms, Amphora coffeaeformis and Nitzschia ovalis, were used to evaluate potential responses to the future CO and temperature increases with respect to cell-specific growth rate, elemental composition, size, population growth rate, and carrying capacity. Diatoms were subjected to four different treatments over a 2 week period (approximately 4 generations): a control (28°C and present-day CO, ~400 ppm), high CO (28°C with high CO, ~750 ppm), high temperature (31°C and present-day CO, ~400 ppm), and greenhouse-effect treatment (31°C with high CO, ~750 ppm). The results indicated that both the cell-specific growth rates and the carrying capacity of A. coffeaeformis decreased at the higher temperature treatment, whereas N. ovalis did not differ among all treatments. No significant difference was found in either species' elemental cell composition, but higher C:N and C:P ratios were observed for A. coffeaeformis and N. ovalis, respectively, in high CO and greenhouse-effect treatments. Smaller cell sizes were observed for both species under the greenhouse-effect treatment, a phenomenon that could alter benthic food webs in the future. [ABSTRACT FROM AUTHOR]

Bacteria associated with eight field-collected and five cultured soft corals of Briareum sp., Sinularia sp., Sarcophyton sp., Nephtheidae sp., and Lobophytum sp. were screened for their abilities in producing antimicrobial metabolites. Field-collected coral samples were collected from Nanwan Bay in southern Taiwan. Cultured corals were collected from the cultivating tank at National Museum of Marine Biology and Aquarium. A total of 1,526 and 1,138 culturable, heterotrophic bacteria were isolated from wild and cultured corals, respectively; seawater requirement and antimicrobial activity were then assessed. There is no significant difference between the ratio of seawater-requiring bacteria on the wild and cultured corals. The ratio of antibiotic-producing bacteria within the seawater-requiring bacteria did not differ between the corals. Nineteen bacterial strains that showed high antimicrobial activity were selected for 16S rDNA sequencing. Three strains could be assigned at the family level (Rhodobacteraceae). The remaining 16 strains belong to eight genera: Marinobacterium (2 strains), Pseudoalteromonas (1), Vibrio (5), Enterovibrio (1), Tateyamaria (1), Labrenzia (2), and Pseudovibrio (4). The crude extract from bacteria strains CGH2XX was found to have high cytotoxicity against the cancer cell line HL-60 (IC = 0.94 μg/ml) and CCRF-CEM (IC = 1.19 μg/ml). Our results demonstrate that the marine bacteria from corals have great potential in the discovery of useful medical molecules. [ABSTRACT FROM AUTHOR]

White spot syndrome virus (WSSV), the sole member of the monotypic family Nimaviridae, is considered an extremely lethal shrimp pathogen. Despite its impact, some essential biological characteristics related to WSSV genome dynamics, such as the synonymous codon usage pattern and selection pressure in genes, remain to be elucidated. The results show that compositional limitations and mutational pressure determine the codon usage bias and base composition in WSSV. Furthermore, different forces of selective pressure are acting across various regions of the WSSV genome. Finally, this study points out the possible occurrence of two major recombination events. [ABSTRACT FROM AUTHOR]

miRNAs involved in the biosynthesis of artemisinin, an anti-malarial compound form the plant Artemisia annua, have been identified using computational approaches to find conserved pre-miRNAs in available A. annua UniGene collections. Eleven pre-miRNAs were found from nine families. Targets predicted for these miRNAs were mainly transcription factors for conserved miRNAs. No target genes involved in artemisinin biosynthesis were found. However, miR390 was predicted to target a gene involved in the trichome development, which is the site of synthesis of artemisinin and could be a candidate for genetic transformation aiming to increase the content of artemisinin. Phylogenetic analyses were carried out to determinate the relation between A. annua and other plant pre-miRNAs: the pre-miRNA-based phylogenetic trees failed to correspond to known phylogenies, suggesting that pre-miRNA primary sequences may be too variable to accurately predict phylogenetic relations. [ABSTRACT FROM AUTHOR]

The influences of a tidal cycle on the distribution of autotrophic plankton were investigated in a hyper-eutrophic lagoon designated as a scenic area. Results showed that the highest concentrations of picoplankton and phytoplankton were found in the middle and inner part of the lagoon, irrespective of the tides. The MDS result also revealed that phytoplankton communities, dominated by Ceratium furca, were similar among stations in the inner bay during both flood tides and ebb tides. The time series sampling results at the inlet-outlet channel revealed that almost the same amounts of phytoplankton and picoplankton were carried through the channel during flood and ebb tides, with no trend in nutrient fluctuations except for phosphate which had a net loss from the lagoon. The results showed that tidal cycles do not effectively flush away phytoplankton and picoplankton from the lagoon, and the blooming of phyto- and picoplankton is inevitable should the situation stay the same. Steps are needed to alleviate the eutrophication condition instead of depending on the natural process such as tidal cycle. [ABSTRACT FROM AUTHOR]

A novel, cellulolytic, bacterial thermophilic strain, T4, was isolated from sugar refinery wastewater in southern Taiwan. This isolate, a Gram-negative, motile, aerobically growing sporulating rod, can secrete thermostable endocellulase (endo-1,4-ß-D-glucanase, EC 3.2.1.4) and hydrolyze carboxymethylcellulose (CMC), phosphoric acid-swollen cellulose, Avicel, filter paper, and salicin. When strain T4 was grown in CMC medium, the cellulolytic enzyme activity in culture supernatants was stable up to 70°C. More than 10% of the original activity was still detectable after heating to 100°C with a pH 7.0 for 1 h. Based on 16S rDNA sequence analysis, DNA base composition, phenotypic and physiological characteristics, as well as DNA-DNA hybridization, strain T4 was classified asGeobacillus thermoleovoransT4 (DSM 14791 = CCRC 17200). We also demonstrated that the type speciesG. stearothermophilus(DSM 22 = ATCC 12980) could hydrolyze amorphous and crystalline (filter paper) celluloses at a rate of 13 and 14%, respectively, in comparison with strain T4. [ABSTRACT FROM AUTHOR]

A correction to this paper has been published: https://doi.org/10.1007/s12223-021-00872-2 [ABSTRACT FROM AUTHOR]

A wild-type strain of Cryptococcus neoformans and Pseudomonas aeruginosa were used to convert n-pentadecane to the corresponding dioic acid, tridecane 1,13-dicarboxylic acid (DC-15). Altering the cell permeability by treating C. neoformans with 1% (v/v) toluene or 7% (v/v) Triton X-100 stimulated production of DC-15 by 1.5-fold and fourfold, respectively. Furthermore, DC-15 productivity was increased from 2.5 mg/l per hour to 18 or 30 mg/l per hour, respectively. If 10% (v/v) hexane was used to treat the yeast culture, stimulation of DC-15 production could reach 200% and more viable cells remained compared to the toluene-treated culture. Data from the organic solvent treatment experiment indicated that the solvent with a higher polarity showed a more adverse effect on DC-15 production. P. aeruginosa was vulnerable to most organic solvents; however, Tween 80 could greatly stimulate the conversion of n-pentadecane to DC-15. Although organic solvents and non-ionic detergents could enhance DC-15 formation by microbial conversion, it was inhibited by elevated levels of DC-15. [ABSTRACT FROM AUTHOR]