1. Detection of QTLs controlling alpha-amylase activity in a diversity panel of 343 barley accessions.
- Author
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Sato, Kazuhiro, Hisano, Hiroshi, Matsumoto, Satoko, Zhou, Tian-Su, and Kihara, Makoto
- Subjects
BARLEY ,ALPHA-amylase ,LOCUS in plant genetics ,PLANT gene mapping ,ALLELES in plants - Abstract
The α-amylase activity of cultivated barley is critically important to the brewing industry. Here, we surveyed variation in malt α-amylase activity in 343 cultivated barley accessions from around the world. Population structure analysis based on genotype data at 1536 SNPs clustered these accessions into two groups, one comprising South-East Asian and Ethiopian accessions and one group containing the other accessions. A genome-wide association study identified significant quantitative trait loci (QTLs) for α-amylase activity on all seven chromosomes of barley. Accessions showing high and low α-amylase activity were crossed with the high-quality Japanese malting barley cv. Harun Nijo to develop F mapping populations. We identified two QTLs on chromosome 6H in a cross between Haruna Nijo (high activity) × Weal (highest activity). Single QTLs were identified each on 3H, 4H, and 5H from a cross between Haruna Nijo (high activity) × VLB-1 (low activity), indicating that the high α-amylase activity in Haruna Nijo might be derived from loci on these chromosomes. The addition of the high α-amylase activity QTL alleles from chromosome 6H in cv. Weal further increased the α-amylase activity conferred by alleles of Haruna Nijo. These results demonstrate that a target haplotype can be successfully improved using a strategy comprising diversity analysis of ex situ collections followed by introducing effective new alleles. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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