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The brown rice planthopper (Nilaparvata lugens Stal) is one of the main pests of rice. The rapid and accurate detection of brown rice planthoppers (BRPH) can help treat rice in time. Due to the small size, large number and complex background of BRPHs, image detection of them is challenging. In this paper, a two-layer detection algorithm based on deep learning technology is proposed to detect them. The algorithm for both layers is the Faster RCNN (regions with CNN features). To effectively utilize the computing resources, different feature extraction networks have been selected for each layer. In addition, the second layer detection network was optimized to improve the final detection performance. The detection results of the two-layer detection algorithm were compared with the detection results of the single-layer detection algorithm. The detection results of the two-layer detection algorithm for detecting different populations and numbers of BRPHs were tested, and the test results were compared with YOLO v3, a deep learning target detection network. The test results show that the detection results of the two-layer detection algorithm were significantly better than those of the single-layer detection algorithm. In the tests for different numbers of BRPHs, the average recall rate of this algorithm was 81.92%, and the average accuracy was 94.64%; meanwhile, the average recall rate of YOLO v3 was 57.12%, and the average accuracy rate was 97.36%. In the experiment with different ages of BRPHs, the average recall rate of the algorithm was 87.67%, and the average accuracy rate was 92.92%. In comparison, for the YOLO v3, the average recall rate was 49.60%, and the average accuracy rate was 96.48%. [ABSTRACT FROM AUTHOR]