1. Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries.
- Author
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de Oliveira Lino, Felipe Senne, Garg, Shilpa, Li, Simone S., Misiakou, Maria-Anna, Kang, Kang, Vale da Costa, Bruno Labate, Beyer-Pedersen, Tobias Svend-Aage, Giacon, Thamiris Guerra, Basso, Thiago Olitta, Panagiotou, Gianni, and Sommer, Morten Otto Alexander
- Subjects
CLEAN energy ,ALTERNATIVE fuels ,MICROBIAL genes ,BACTERIA ,GREENHOUSE gas mitigation ,ETHANOL - Abstract
Bioethanol is a sustainable energy alternative and can contribute to global greenhouse-gas emission reductions by over 60%. Its industrial production faces various bottlenecks, including sub-optimal efficiency resulting from bacteria. Broad-spectrum removal of these contaminants results in negligible gains, suggesting that the process is shaped by ecological interactions within the microbial community. Here, we survey the microbiome across all process steps at two biorefineries, over three timepoints in a production season. Leveraging shotgun metagenomics and cultivation-based approaches, we identify beneficial bacteria and find improved outcome when yeast-to-bacteria ratios increase during fermentation. We provide a microbial gene catalogue which reveals bacteria-specific pathways associated with performance. We also show that Limosilactobacillus fermentum overgrowth lowers production, with one strain reducing yield by ~5% in laboratory fermentations, potentially due to its metabolite profile. Temperature is found to be a major driver for strain-level dynamics. Improved microbial management strategies could unlock environmental and economic gains in this US $ 60 billion industry enabling its wider adoption. Industrial bioethanol production is driven by ecological interactions within the microbial community rather than the interactions within yeast population. Here, the authors identify bacteria affecting ethanol production and reveal temperature as the major driving force for strain-level dynamics. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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