1. Genetic diversity and population structure analysis in Job's tears (Coix lacryma-jobi L.) collections from northeastern Himalayan region.
- Author
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Kumar, Amit, Das, S. P., Pandey, Avinash, Singh, Shiv Poojan, Kaur, Simardeep, Jaiswal, Sandeep, Philanim, W. S., Touthang, Letngam, Verma, Veerendra Kumar, Singh, Binay K., and Mishra, V. K.
- Abstract
The study characterized 34 Job's tears accessions from the northeastern Himalayan region using yield-related traits and simple sequence repeats (SSR) markers. Genotyping with 17 SSR markers revealed an average of 3.18 alleles per locus, varying from 2 to 4. Polymorphism information content values ranged from 0.27 to 0.52, averaging 0.41. Clustering and principal coordinate analysis (PCoA) based on SSR markers grouped the accessions into three major groups. The first three principal coordinates in the PCoA cumulatively explained 41.96% of the variability in the accessions, with the first and second principal coordinates explaining 22.51% and 10.39% of the molecular variability, respectively. The model-based genetic structure analysis detected the maximal ΔK (80.87) at K = 2, grouping the entire accessions into two subgroups. The analysis of molecular variance (AMOVA) indicated higher genetic variation within individuals (52.86%) than among individuals (47.14%). The F
ST value (0.2), STRUCTURE analysis, and PCoA analysis indicated moderate population differentiation. Yield-trait-based analysis resulted in four clusters. Cluster I included six accessions with short height, cluster II comprised 12 accessions with high test weight, cluster III comprised six accessions with high yield, and cluster IV had nine accessions with early flowering, respectively. Principal component analysis (PCA) extracted three components explaining 67.4% of the total variation, with PC1 emphasizing yield and growth-related traits and PC2 highlighting days to flowering and panicle length. Most traits showed positive correlations with yield per plant, especially test weight (0.65, P ≤ 0.01). Path coefficient analysis revealed a strong positive direct effect of test weight and the number of internodes per plant on yield per plant. Cluster analysis and genotype-by-trait biplot analysis showed similar patterns among accessions. However, the Mantel test indicated no significant correlation between genetic and morphological distances (r2 = 0.010, P = 0.41). Additive main-effects and multiplicative interaction (AMMI) analysis and multi-trait stability index (MTSI) identified three promising accessions (IC600638, IC540181, and IC540256) suitable for selection in future breeding programs with 10% intensity. [ABSTRACT FROM AUTHOR]- Published
- 2024
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