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Floodplain aquatic ecosystems experience temporal changes in basal production sources and inputs from allochthonous sources that influence energy flow. We analyzed stable isotope ratios of carbon (δ13C) and nitrogen (δ15N) from 449 fish muscles representing 18 species to characterize energy pathways in two rivers of the lower Okavango Delta, Botswana. We sampled fish during wet and dry seasons and used mixing models to estimate proportions of major basal production sources assimilated by fishes. We estimated trophic position (TP) for each fish population and assessed the association between TP and the degree that fish biomass was supported by a single production source. During the wet season, fishes in the Boteti River assimilated material through food chains originating mainly from aquatic macrophytes. During the dry season, terrestrial C3 plants and terrestrial C4 grasses assumed greater importance. In the Boro River, terrestrial C3 plants were inferred to be an important production source supporting fishes during the wet season, with aquatic macrophytes becoming more important during the dry season. In both rivers and seasons, the degree of dependence on a single source was negatively related to TP, supporting the hypothesis that organisms positioned higher in the food web tend to be supported by multiple food chains and basal sources, whereas organisms lower in the food web may be supported by many or few food chains. We showed that consumers in river food webs shift foraging habits in response to seasonal patterns of connectivity and habitat availability, thus promoting long-term population and community stability.

Body size, trophic position (TP), and trophic niche width are important elements of food webs; however, there is still debate regarding their interrelationships. Most studies have tested these correlations using datasets restricted to carnivores and bivariate models that disregard potential indirect effects of other factors, their interactions, and phylogeny. We analyzed relationships among TP, consumer size, maximum food item size, food item size variation (a proxy for trophic niche width), and two other traits (gut length and mouth width) using confirmatory path analysis of an extensive dataset for freshwater fishes that encompass both carnivorous and non-carnivorous species. Consumer size was associated with maximum food size, food size variation, mouth width, and gut length, all of which mediated indirect relationships between body size and TP. Mouth gape was associated with maximum food size, and consumers that fed on larger food items had higher TP. Consumers with relatively long guts generally fed on small and homogeneous food items near the base of the food web. Models were consistent whether or not accounting for phylogeny, but varied according to trophic guilds. However, the body size of both carnivorous and non-carnivorous was not directly associated with TP. Therefore, the incorporation of functional traits and their intermediate pathways is critical for understanding size-based trophic relationships of animals that encompass diverse feeding strategies. Our results caution approaches that rely on body size as a surrogate for TP, especially in systems where plants and detritus are consumed directly by a significant number of animals, such as in most freshwater ecosystems.

Funding was funded by National Science Foundation (US) (Grant Nos. 0614334, 0741450, 1354511), Svenska Forskningsrådet Formas (Grant No. 2016-02045), H2020 European Research Council (Grant No. AdG 250189) and Instituto Nacional de Ciência e Tecnologia de Ciência Animal (Grant No. 306455/2014-5). Freshwater ecosystems provide irreplaceable services for both nature and society. The quality and quantity of freshwater affect biogeochemical processes and ecological dynamics that determine biodiversity, ecosystem productivity, and human health and welfare at local, regional and global scales. Freshwater ecosystems and their associated riparian habitats are amongst the most biologically diverse on Earth, and have inestimable economic, health, cultural, scientific and educational values. Yet human impacts to lakes, rivers, streams, wetlands and groundwater are dramatically reducing biodiversity and robbing critical natural resources and services from current and future generations. Freshwater biodiversity is declining rapidly on every continent and in every major river basin on Earth, and this degradation is occurring more rapidly than in terrestrial ecosystems. Currently, about one third of all global freshwater discharges pass through human agricultural, industrial or urban infrastructure. About one fifth of the Earth’s arable land is now already equipped for irrigation, including all the most productive lands, and this proportion is projected to surpass one third by midcentury to feed the rapidly expanding populations of humans and commensal species, especially poultry and ruminant livestock. Less than one fifth of the world’s preindustrial freshwater wetlands remain, and this proportion is projected to decline to under one tenth by midcentury, with imminent threats from water transfer megaprojects in Brazil and India, and coastal wetland drainage megaprojects in China. The Living Planet Index for freshwater vertebrate populations has declined to just one third that of 1970, and is projected to sink below one fifth by midcentury. A linear model of global economic expansion yields the chilling prediction that human utilization of critical freshwater resources will approach one half of the Earth’s total capacity by midcentury. Although the magnitude and growth of the human freshwater footprint are greater than is generally understood by policy makers, the news media, or the general public, slowing and reversing dramatic losses of freshwater species and ecosystems is still possible. We recommend a set of urgent policy actions that promote clean water, conserve watershed services, and restore freshwater ecosystems and their vital services. Effective management of freshwater resources and ecosystems must be ranked amongst humanity’s highest priorities. Postprint

The Lower Mekong River and its three major tributaries, the Sekong, Sesan, and Srepok rivers, are systems with high aquatic biodiversity that now face impacts from new hydroelectric dams. Despite the ecological, economic, and cultural importance of the freshwater biota, knowledge about aquatic ecology in this region remains poor. We used morphological and stable isotope data to explore how fish functional and trophic diversity vary between the four rivers that comprise the Mekong-3S river system. During our field surveys, the Sesan had experienced greatest flow alteration from dams and had lowest taxonomic and functional diversity, with species less packed and less evenly dispersed within morphological space compared to the other rivers. The Sekong had greatest functional diversity, with species less packed in morphological space. Species in the Mekong and Srepok were more evenly distributed in morphological space and had intermediate levels of functional diversity. Isotopic niche diversity in the Sesan did not appear to be significantly different from the Srepok and Sekong rivers. Conversely, the more species-rich Mekong fish assemblage encompassed a greater isotopic space with species less packed and evenly distributed. Greater trophic redundancy was observed amongst fishes of the 3S rivers than the Mekong. Species functional redundancy could buffer river food webs against species loss caused by dams; however, additional traits and niche dimensions should be evaluated to test this hypothesis. Overall, morphological and isotopic evidence from the Mekong and 3S rivers indicate that river impoundment and flow regulation function as an environmental filter that reduces fish functional diversity.

Neotropical cichlids exhibit great diversity of morphological traits associated with feeding, locomotion, and habitat use. We examined the relationship between functional traits and diet by analyzing a dataset for 14 cichlid species from rivers in the Selva Lacandona region, Usumacinta Basin, Chiapas, Mexico. Volumetric proportions of ingested food items were used to calculate diet breath and interspecific dietary overlap. Morphometric analysis was performed using 24 traits associated with feeding. Associations between morphological and dietary components were assessed using canonical correspondence analysis. The most common feeding guilds were omnivore, herbivore and carnivore (the latter consuming invertebrates and/or fish), with detritivores represented by relatively few species and strict piscivore by one species. Dietary overlap was highest among carnivores (P. friedrichsthalii and T. salvini), herbivores (C. intermedium and C. pearsei) and detritivore-herbivores (V. melanura and K. ufermanni). Dietary components were strongly correlated with several morphological traits, confirming patterns observed in other cichlids. For example, jaw protrusion and mandible length were positively correlated with consumption of fish and terrestrial invertebrates. A longer gut and a wider tooth plate on the lower pharyngeal jaw were correlated with ingestion of vegetation, algae and detritus. Findings confirmed a high degree of trophic specialization in certain species as well as interspecific divergence of functional traits associated with feeding among cichlids of the Usumacinta Basin, which is consistent with the idea that Middle American cichlids represent an adaptive radiation.

In the Amazon Basin, several species of herbivorous serrasalmid fishes inhabit rapids, but it is unknown if they partition food resources during the annual low-water period when fish densities are high within greatly reduced volume of aquatic habitat. We investigated the trophic ecology of juveniles and adults of three species, Myleus setiger, Ossubtus xinguense, and Tometes kranponhah, common in rapids of the Xingu River during the low-water period. Diets, stable isotope ratios of muscle tissue, and functional traits were analyzed for 59 specimens of M. setiger, 175 of O. xinguense and 215 of T. kranponhah. The three species overlapped in dietary and isotopic space, with adult O. xinguense being most divergent. Juvenile and adult T. kranponhah and juvenile O. xinguense, two groups with broad diets, had lowest trophic positions estimated from isotopic data. Adult O. xinguense had the highest trophic position despite having large amounts of Podostemaceae in the diet. High trophic overlap during the low-water period suggests that either food resources are not limiting, or niches are partitioned by other means. Differences in functional traits of the three serrasalmids could be associated with differential efficiencies of swimming and feeding within microhabitats that vary according to water velocity and/or structural complexity.

Seasonal environments favor the evolution of capital breeding, whereby reproduction uses surplus energy from resources acquired during an earlier period. Consequently, reproductive effort in capital breeders is expected to depend on traits associated with energy storage rather than environmental conditions at the time of reproduction. Based on a 15-year dataset, we investigate the effect of phenotype (body size and condition) and environmental conditions (intensity of hydrological seasons, predator density, and density of conspecifics) on fecundity three capital breeding fish species from the strongly seasonal Amazon River floodplain: Psectrogaster rutiloides, Triportheus angulatus, and Acestrorhynchus falcirostris. Fecundity of all three species was strongly correlated with phenotype and modulated by unfavorable environmental conditions during the period of reproduction, especially high density of conspecifics. Fecundity was negatively affected by the density of conspecifics for small females of A. falcirostris, and for T. angulatus females with poor body condition. Fecundity of P. rutiloides declined during periods of drought when density of conspecifics was highest. A clear tradeoff between quantity and quality of oocytes was found only for P. rutiloides. This study highlights that reproductive allocation of capital breeders in seasonal environments is strongly linked to environmental conditions before and during the reproductive period.

Streams of protected areas should be subjected to less environmental degradation than surrounding areas and consequently support greater aquatic biodiversity. To test this, 186 environmental and landscape variables were measured in 34 streams within the Caxiuana National Forest (CNF) and its surrounding zone in the eastern Amazon. We expected that streams inside the CNF protected area would have more riparian forest cover and large woody debris (LWD) that increase instream habitat complexity and aquatic biodiversity. Several environmental variables differed between streams in the CNF and surrounding zone; however, the major difference was greater LWD, leaf litter, and channel depth in CNF streams. Richness of fish, Chironomidae, EPT (Ephemeroptera + Plecoptera + Trichoptera), and all-groups combined were positively associated with LWD. Assemblage taxonomic composition was correlated with several variables, but most groups revealed no clear differentiation between the two areas. This lack of differentiation may be explained by relatively minor environmental impacts in areas surrounding the CNF given the region’s small human population. The most notable impact to streams outside of the CNF was removal of LWD to facilitate boat passage. To conserve aquatic biodiversity, we recommend expansion of protected areas and adoption of policies governing land use in surrounding zones.

Fish assemblages in tropical lowland rivers are characterized by a high richness of species that feed on a diverse array of food resources. Although closely related species often have similar feeding ecology, species within the family Cichlidae display a broad spectrum of trophic niches, and resource partitioning has been inferred from studies conducted in Neotropical rivers. We investigated interspecific variation in food resource use and its relationship to morphological variation among cichlid fishes within the Pantanos de Centla Biosphere Reserve, a coastal area encompassing the delta of the Grijalva-Usumacinta River in Tabasco, Mexico. Most species consumed benthic crustaceans, aquatic insect larvae, and detritus, but some were more herbivorous, and one species was a specialized piscivore. Dietary niche overlap among species was higher than expected for one assemblage, and similar to random expectations for another, suggesting a lesser role for resource partitioning than has been shown for some cichlid assemblages, perhaps due to availability of abundant resources, even in low-water conditions. Canonical correspondence analysis revealed that greatest morphological differences am7ong species involved functional traits directly associated with resource use. Relationships between feeding ecology and morphology were similar to those described for other riverine cichlids. Strong ecomorphological relationships facilitate inferences about the ecology of cichlid species, including species that currently lack data from field studies. Knowledge of ecological relationships will be important for conservation in the Pantanos de Centla, an ecosystem of global significance for biodiversity and ecosystem services.

Cannibalism, the act of eating an individual of the same species, has long intrigued researchers. More than 30 years after publication of reviews on the topic, there appears to be little consensus about the commonness of cannibalism and its ecological and evolutionary importance. Since Smith and Reay (Rev Fish Biol Fish 1:41–64, 1991. doi: 10.1007/BF00042661 ) reviewed cannibalism in teleost fish, many new studies have been published that address aspects of cannibalism and here we present an updated review. Reports of cannibalism have increased, especially since the 1990s, with many accounts from aquaculture research. Cannibalism has been recorded for 390 teleost species from 104 families, with 150 species accounts based only on captive fish. The number of literature reports of cannibalism is almost equal for marine and freshwater fishes; freshwater families with most reported cases are Percidae, Salmonidae and Esocidae, and marine families are Gobiidae, Gadidae and Merluciidae. Ecological and evolutionary implications of cannibalism are discussed along with perspectives for future research.

α-diversity often responds to habitat structural complexity as a unimodal function. In aquatic systems, increasing density of aquatic vegetation creates more habitat structural complexity for fishes, but only up to a certain threshold, beyond which fish abundance and diversity are restricted by reduced space. As a result, species turnover and nestedness should be observed over habitat structural complexity gradients, reflecting the sorting of species according to aspects of their environment. We investigated the relationship of fish α and β diversity along gradients of habitat structural complexity created by aquatic vegetation in the floodplain of Upper Parana River. We collected a total of 1832 fishes (24 species) along vegetation density gradients. Our results revealed that α diversity peaked at intermediate levels of habitat structural complexity where interstitial spaces were numerous but no so small as to limit occupancy by most fishes. Low α diversity was associated with lower habitat structural complexity, as commonly reported, and this may result from the influence of predation mortality or threat where there is less physical structure that provides refuge from predators and interference with predator lines of sight for prey detection. Fish diversity is low in patches with high habitat structural complexity because small interstitial spaces restrict fish size and dissolved oxygen concentration sometimes is low. Aquatic vegetation density in floodplain habitats therefore functions as a strong environmental filter influencing spatial patterns of fish α and β diversity.

Increasing hydropower expansion in hyper-diverse tropical river basins is currently threatening aquatic biodiversity on an unprecedented scale. Among the largest and most controversial of these projects is the Belo Monte Hydroelectric Complex being constructed on the Xingu River, a major Amazon tributary in Brazil. Despite the potentially large impacts, almost no baseline ecological data are available for the river’s diverse ichthyofauna. This study uses ecomorphology and stable isotope analysis to explore the functional and trophic relationships among four of the dominant families within the Xingu River rapids (Loricariidae, Cichlidae, Anostomidae, and Serrasalmidae). Morphological analysis revealed clear separation of these families based on functional traits associated with microhabitat use and foraging strategies, with the Loricariidae and Cichlidae displaying greatest functional diversity. The four families analyzed were not clearly differentiated in isotopic space defined by δ13C and δ15N values. Considerable overlap was observed among isotopic niches and all four families primarily assimilated material originating from phytomicrobenthos (assumed to be mainly benthic algae). Differences between morphological and trophic diversity within families provide insight into how this diverse assemblage may be partitioning niche space, which in turn has implications for population responses to hydrologic alteration.

The Neotropics harbor the world’s most diverse freshwater fish fauna, with many of these species supporting major commercial, subsistence, or sport fisheries. Knowledge of population genetic structure is available for very few Neotropical fishes, thereby restricting management. To address this need, we examined population genetic variation in mtDNA control region sequences and twelve microsatellite loci in the speckled or barred peacock bass, Cichla temensis. Moderate and statistically significant genetic divergence among localities indicates that migration is low in this species, implying that populations inhabiting tributaries or even smaller spatial units should constitute management units. Analysis of molecular variance of mtDNA sequences identified six areas with largely exclusive haplotype clades, and a seventh area of high admixture, but major drainage basins harbored non-monophyletic haplotype groups. On the other hand, molecular variation in the microsatellite data was best explained by drainage basin and, subsequently, by the seven areas. Populations in these seven areas could be considered evolutionarily significant units (ESUs), and, therefore, we tested hypotheses explaining the discordant signal of mtDNA and microsatellite data using approximate Bayesian computation. This analysis indicated that the divergence of mtDNA clades preceded the divergence of contemporary ESUs across basins, with subsequent lineage sorting among ESUs due to reduced gene flow. Available genetic and ecological information indicates that C. temensis populations of major tributary rivers should be managed as separate stocks that likely are adapted to local environmental conditions.

Recent literature reviews of bioassessment methods raise questions about use of least-impacted reference sites to characterize natural conditions that no longer exist within contemporary landscapes. We explore an alternate approach for bioassessment that uses species site occupancy data from museum archives as input for species distribution models (SDMs) stacked to predict species assemblages of freshwater fishes in Texas. When data for estimating reference conditions are lacking, deviation between richness of contemporary versus modeled species assemblages could provide a means to infer relative biological integrity at appropriate spatial scales. We constructed SDMs for 100 freshwater fish species to compare predicted species assemblages to data on contemporary assemblages acquired by four independent surveys that sampled 269 sites. We then compared site-specific observed/predicted ratios of the number of species at sites to scores from a multimetric index of biotic integrity (IBI). Predicted numbers of species were moderately to strongly correlated with the numbers observed by the four surveys. We found significant, though weak, relationships between observed/predicted ratios and IBI scores. SDM-based assessments identified patterns of local assemblage change that were congruent with IBI inferences; however, modeling artifacts that likely contributed to over-prediction of species presence may restrict the stand-alone use of SDM-derived patterns for bioassessment and therefore warrant examination. Our results suggest that when extensive standardized survey data that include reference sites are lacking, as is commonly the case, SDMs derived from generally much more readily available species site occupancy data could be used to provide a complementary tool for bioassessment.

Patterns of association between functional traits and environmental gradients can improve understanding of species assemblage structure from local to regional scales, and therefore may be useful for natural resource management. We measured functional traits related to trophic ecology, habitat use, and life-history strategies of fishes and examined their associations with environmental factors in the Brazos and Trinity River basins in Central Texas. We also examined the relationship between functional diversity of fish assemblages and indices of biotic integrity and habitat quality. Environmental characteristics at the local reach and catchment scales, including the extent of forested area in the watershed, amount of land developed for urban and agricultural uses, stream size, substrate characteristics, and availability of riffle and pool habitats, were significantly associated with functional trait composition of fish assemblages. Broad physiographic differences between ecoregions also had a large influence on taxonomic and functional assemblage structure. In general, the volume of functional trait space occupied by fish assemblages was greatest in streams with high habitat quality scores located within landscapes having less alteration from agriculture and urban development. Distributions of functional traits in fish assemblages might provide an additional basis for assessment of stream condition in relation to environmental impacts.

This study analyzed variation in stable isotope ratios of aquatic and terrestrial primary producers and two common cyprinid fishes (Capoeta banarescui and Squalius cephalus) at seven sites in the upper Yesilirmak River Basin, Turkey, to estimate relative contributions of basal production sources to fish biomass. We hypothesized that seasonal and spatial variation in fish assimilation of basal production sources would be affected by hydrological variation, with results for a reach downstream from a reservoir differing from those from upstream sites. Carbon and nitrogen isotopic ratios of primary producers and S. cephalus and δ15N of C. banarescui revealed significant spatial variation. δ13C of primary producers, δ15N of S. cephalus, and both δ13C and δ15N of C. banarescui revealed significant seasonal variation. C. banarescui biomass in the river channel was mostly derived from terrestrial herbaceous plants, and its biomass in the reservoir derived mostly from aquatic plants. Estimated proportional contributions of herbaceous plants to both species were greatest at the downstream site during spring, and declined during summer in the case C. banarescui. Overall, the influence of the dam was small relative to effects from watershed characteristics and seasonal changes in temperature and hydrology.

Combined effects of climate change and deforestation have altered precipitation patterns in the Amazon. This has led to changes in the frequency of extreme events of flood and drought in recent decades and in the magnitude of the annual flood pulse, a phenomenon that influences virtually all aspects of river-floodplain ecosystem dynamics. Analysis of long-term data revealed abrupt and synchronous changes in hydrology and fish assemblage structure of a floodplain lake near the confluence of Amazon and Negro rivers. After an intense drought in 2005, the assemblage assumed a different and fairly persistent taxonomic composition and functional structure. Declines in abundance after 2005 were more pronounced for species of all sizes having equilibrium life history strategy, large species with periodic life history strategy, and for all trophic levels except primary consumers. Our results suggest that the extreme drought triggered changes in the fish assemblage and subsequent anomalous hydrological conditions have hampered assemblage recovery. These findings stress the need to account for climatic-driven hydrological changes in conservation efforts addressing aquatic biodiversity and fishery resources in the central Amazon.

Personal care products, pharmaceuticals, and other contaminants of emerging concern (CECs) in domestic wastewater treatment plant (WWTP) effluents can impact aquatic organisms. Health indicators were compared for mosquitofish (Gambusia affinis) collected above and below WWTP discharges from five streams in suburban areas of the Houston metropolitan area, Texas, USA. Specimens were evaluated for reproductive, morphological, and histological indicators. Several indicators revealed significant spatial and temporal variation; however, possibly because of their mobility, fish collected upstream and downstream of wastewater treatment plants did not reveal consistent trends based on the endpoints examined. CEC concentrations in water samples from stream reaches below WWTP discharges were quantified for the first time in the Houston Metropolitan area. The 18 CECs detected in stream water had concentrations lower than values currently reported to impact fish. Future research should examine caged fish at each site and fish collected over longer stream reaches that receive successive discharges from WWTP and stronger CEC gradients.

The Neotropical Cichlidae is among the most species-rich and ecologically diverse groups of freshwater fishes. This study investigated interspecific morphological and ecological relationships within an assemblage of six cichlids in the Upper Bladen River, Belize. This portion of the river drains a nearly pristine watershed within a nature reserve, and thus should provide a natural ecological context for interpretation of ecological patterns. Species distributions within morphological, habitat and dietary space yielded patterns consistent with a hypothesis of niche partitioning. Statistical analyses of the species assemblage revealed relationships between two principal morphological gradients from multivariate analysis with several diet and habitat variables, and these patterns were consistent with prior functional morphological interpretations. Given that this local cichlid assemblage contains no congeneric species, it is apparent that morphological divergence resulting in niche segregation reflects selective establishment of species from a more species-rich regional species pool rather than in situ adaptive evolution.

Floodplain habitats have been inferred to provide a variety of functions for aquatic organisms, yet few studies have documented movement between channel and aquatic floodplain habitats. We exploited spatial variation in stable isotope ratios of gizzard shad (Dorosoma cepedianum) to document movement between floodplain lakes and the main river channel of the Brazos River, Texas, during a period of frequent hydrologic connectivity. Additionally, we examined stomach contents of shad to determine if ontogenetic diet shifts or faunal exchange best explained variation in isotopic ratios. Regression analysis indicated significant relationships between gizzard shad size and isotopic ratios in oxbow lakes, whereas these relationships were not significant for the main channel. Plots of individual fish in each habitat suggested that adult shad migrated into oxbow lakes during floods whereas juveniles assimilated material produced in oxbows. Some adults in oxbows had signatures similar to juveniles, and these individuals were probably long-term oxbow residents. The proportion of adults with a “river” signature was greater in the oxbow with the shortest flood recurrence interval where opportunities for faunal exchange were more frequent. Analysis of stomach contents indicated almost total overlap between adult and juvenile diets indicating that movement between habitats having different isotopic ratios of basal resources rather than ontogenetic dietary shifts best explained patterns of isotopic variation in Brazos River gizzard shad.

A field experiment was conducted to examine the influence of variable density (complexity) of small patches of woody debris on the abundance and taxonomic richness of macroinvertebrates and fishes in the Brazos River, a meandering lowland river in east-central Texas. Woody debris patches contained bundles of either 8 or 16 sticks of two sizes, and reference plots contained no woody debris. The experiment was conducted in the littoral zone in the river channel and a nearby oxbow lake. Organisms were collected from each patch after 14 days. Abundance and taxonomic assemblage structure of macroinvertebrates in both the river channel and oxbow were significantly and positively influenced by complexity of woody debris. For fish in the oxbow, abundance and species richness were greater in woody debris than sites lacking structure, but the opposite trend was observed for fish in the river channel. This difference could be associated with isolation from source habitats and low colonization of the constructed woody debris patches in the river by fishes with affinities for complex habitats. Small lotic-adapted minnows were captured from reference habitats in the channel, but these species were rare in woody debris patches. This was in contrast to aquatic insects in the river channel, such as caddisfly and midge larvae, that efficiently colonized the small isolated patches of woody debris. In a lotic environment, woody debris provides vertical surfaces that intercept drifting insect larvae and provides protection from the water current. We speculate that greater abundance of macroinvertebrates in woody debris patches in both habitats results from the combined influence of high food resource availability and refuge from predation provided by structurally complex habitats.

Efforts to conserve, restore, or otherwise manage large rivers and the services they provide are hindered by limited understanding of the functional dynamics of these systems. This shortcoming is especially evident with regard to trophic structure and energy flow. We used natural abundances of carbon and nitrogen isotopes to examine patterns of material flow in ten large-river food webs characterized by different landscape-scale hydrologic characteristics (low-gradient river, high-gradient river, river stretches downstream of reservoirs, and reservoirs), and tested predictions from three ecosystem concepts commonly applied to large-rivers: The River Continuum Concept, The Flood Pulse Concept and the Riverine Productivity Model. Carbon derived from aquatic C3 plants and phytoplankton were the dominant energy sources supporting secondary consumers across the ten large-river food webs examined, but relative contributions differed significantly among landscape types. For low-gradient river food webs, aquatic C3 plants were the principal carbon source, contributing as much as 80% of carbon assimilated by top consumers, with phytoplankton secondarily important. The estimated relative importance of phytoplankton was greatest for food webs of reservoirs and river stretches downriver from impoundments, although aquatic C3 plants contributed similar amounts in both landscape types. Highest 99th percentile source contribution estimates for C4 plants and filamentous algae (both approximately 40%) were observed for high-gradient river food webs. Our results for low-gradient rivers supported predictions of the Flood Pulse Concept, whereas results for the three other landscape types supported the Riverine Productivity Model to varying degrees. Incorporation of landscape-scale hydrologic or geomorphic characteristics, such as river slope or floodplain width, may promote integration of fluvial ecosystem concepts. Expanding these models to include hydrologically impacted landscapes should lead to a more holistic understanding of ecosystem processes in large-river systems.

Seasonal variation in aquatic food web structure at Mad Island Marsh, Matagorda Bay, Texas, was examined using dietary information obtained from the analysis of gut contents from large samples of fish and crustacean specimens. Unique aspects of this study include the use of large samples of consumer gut contents (n=6,452), long-term sampling (bimonthly surveys over 18 mo), and standard methods of data collection and analysis facilitating comparisons with other aquatic food webs. Dietary data were partitioned for analysis into warm (summer) and cold (winter) seasons. Most consumers fed low in the food web, with trophic levels ranging from about 2 to 3.5 during both summer and winter. Vegetative detritus was more important in macroconsumer diets than live algae and macrophytes. Low trophic levels of consumers reflected the important role of abundant detritivores (e.g., striped mulletMugil cephalus, Gulf menhadenBrevortia patronum, and macroinvertebrates) in linking detritus to top predators via short food chains, a finding consistent with many other estuarine food web studies. Despite changes in community composition and population size structure of certain species, most food web properties revealed comparatively little seasonal variation. The summer food web had more nodes (86), more links (562), a higher density of links as indicated by connectance (0.08), and a slightly higher predator: prey ratio (0.51) compared to the winter food web (75 nodes, 394 links, connectance = 0.07, predator: prey ratio = 0.47). Proportions of top (0.06–0.07), intermediate (0.75–0.76), and basal (0.19) species did not vary significantly between seasons, but mean trophic level was higher during summer. Addition of feeding links based on information from the literature increased connectance to 0.13 during both seasons; other web parameters had values similar to those obtained for our directly estimated food webs. Seasonal variation in food web structure was influenced by changes in community composition (e.g., influxes of postlarval estuarine-dependent marine fishes during winter), availability of resources (e.g., more submerged macrophytes and amphipods during summer), and size structure and ontogenetic diet shifts of dominant consumer taxa. Our findings suggest that some basic properties of estuarine food web are resilient to seasonal changes in population and community structures and food web architecture.

The African bonytongue, Heterotis niloticus (Osteoglossidae), is an important fisheries and aquaculture species in West Africa. This species has frequently been characterized either as an omnivore, insectivore or detritivore, the latter, in part, because of its benthic feeding habitats and possession of a gizzard (thick-walled pyloric stomach). We examined diets of two populations of H. niloticus in the So River in southern Benin. A population from the river channel and seasonally flooded marginal plains was dominated by juvenile and subadult size classes. Adults size classes were common in a second population from Lake Hlan, a natural lake in the river floodplain located upstream from the channel study region. Heterotis of all sizes consumed a variety of food resources, ranging from aquatic invertebrates to small seeds. Aquatic invertebrates composed a large proportion of the diets of juveniles, and adults consumed a mixture of aquatic invertebrates, seeds, and detritus. Seasonal dietary variation was observed in both populations, and diet breadth was not significantly different between populations. Aquatic invertebrates remained significant in diets of larger size classes; diets of fish between 100 and 200 mm began to include seeds and detritus, with a marked increase in the volumetric proportion of detritus in diets of fish between 300 and 400 mm in Lake Hlan and between 500 600 mm in the river. Relative gut length was inversely related to body size, which supports the notion that Heterotis is an omnivore and not a specialized detritivore. The thick-walled gizzard of Heterotis, which generally contained sand, probably aids digestion of seed coats. Because Heterotis consume mostly invertebrates and grass seeds in shallow waters of seasonal aquatic habitats and lakes the river floodplain, foraging success and fishery production should be strongly dependent on the annual flood pulse.

In tropical floodplain rivers, communities associated with structurally complex habitats are disassembled and reassembled as aquatic organisms repeatedly colonize new areas in response to gradual but continuous changes in water level. Thus, a neutral model reflecting random colonization and extinction dynamics may be sufficient to predict assemblage patterns at the scale of local habitat patches. If water level fluctuations and associated patch dynamics are sufficiently predictable, however, community assembly on habitat patches also may be influenced by species-specific responses to habitat features and/or species interactions. We experimentally manipulated structural complexity and proximity to source habitat (which influences colonization rate) of simulated rocky patches in the littoral zone of a tropical lowland river and demonstrate significant effects of both factors on species density of fishes and macroinvertebrates. Interspecific variation in vagility significantly affected assemblage response to habitat complexity. In a second experiment, created habitat patches were sampled over time intervals ranging from 1 day to 36 days to examine temporal dynamics of community assembly. A null-model test revealed that assemblage structure became increasingly non-random, concomitant with increasing species density, over time. Community dynamics in newly formed habitat patches appeared to be dominated by dispersal, whereas in older patches, abundances of individual species increasingly were influenced by habitat characteristics. These data suggest that species-specific responses to environmental variation resulted, in part, because of species interactions. We conclude that community assembly in shallow habitats of this tropical lowland river is influenced by physical habitat characteristics, the spatial distribution of habitat patches, and species interactions as habitats are saturated with individuals.

Meteorological impacts of El Nino events of 1982–1983 and 1997–1998 were observed in locations throughout the world. In southern Brazil, El Nino events are associated with increased rainfall and higher freshwater discharge into Patos Lagoon, a large coastal lagoon that empties into the Atlantic Ocean. Based on interdecadal meteorological and biological data sets encompassing the two strongest El Nino events of the last 50 yr, we evaluated the hypothesis that El Nino-induced hydrological changes are a major driving force controlling the interannual variation in the structure and dynamics of fishes in the Patos Lagoon estuary. High rainfall in the drainage basin of the lagoon coincided with low salinity in the estuarine area during both El Nino episodes. Total rainfall in the drainage basin was higher (767 versus 711 mm) and near-zero salinity conditions in the estuarine area lasted about 3 mo longer during the 1997–1998 El Nino event compared with the 1982–1983 event. Hydrological changes triggered by both El Nino events had similar relationships to fish species composition and diversity patterns, but the 1997–1998 event appeared to have stronger effects on the species assemblage. Although shifts in species composition were qualitatively similar during the two El Nino events, distance between El Nino and non-El Nino assemblage multivariate centroids was greater during the 1996–2000 sampling period compared with the 1979–1983 period. We provide a conceptual model of the principal mechanisms and processes connecting the atmospheric-oceanographic interactions triggered by the El Nino phenomena and their effect on the estuarine fish assemblage.

Jenynsia multidentata is an important component of the fish assemblage of the Patos Lagoon estuary in southern South Brazil. In order to investigate its reproductive cycle and abundance patterns, standardized sampling was conducted over large spatial (marine, estuary and lagoon) and temporal (1996–2003) scales. Both females and males were significantly more abundant during summer (December–March) than winter (June–August). Total abundance was significantly positively correlated with water temperature (R=0.91), but not with salinity and Secchi depth. Females achieved higher average (49.1 mm LT) and maximum size (91 mm) than males (37.7 mm; 66 mm), and average sex ratio was female-biased (3.2:1) across all months. An annual reproductive cycle composed of two cohorts was proposed: individuals born from December to March started reproducing during late winter and spring and individuals born from September to November started reproducing during late summer and fall. A 12-month survey conducted throughout the longitudinal gradient of the lagoon indicated that the species was only present in the estuary, and was absent from marine and upper lagoon areas. The abiotic factors analyzed could not explain this spatial distribution. Inter-annual variation in abundance was great, with higher abundance during drier years. A `dilution effect' was proposed to explain the low abundance of the species in the estuary during high-rainfall trigged by El Nino episodes.

Patos Lagoon is located off the southern Brazilian coast and represents one of the largest coastal lagoons in the world. We estimated hydrological and physicochemical conditions associated with spatial variation in the abundance and diversity of freshwater fishes along the lagoon, and inter-annual variability in abundances of freshwater fishes occurring in its estuarine zone. During our study, the region experienced two periods of average rainfall and two periods with above-average rainfall. The characids Astyanax eigenmaniorum and Oligosarcus jenynsii and the siluriform Parapimelodus nigribarbis were the most abundant freshwater fishes in the estuary during wet periods when water levels were higher and salinity was lower. Increases in abundance of these species in the estuarine area, all of which members of primary-division freshwater families, apparently were associated with pulses of reproduction and passive transport from freshwater habitats located near middle and upper lagoon reaches. Abundance of species from secondary freshwater families, such as poeciliids and cichlids, were less correlated with hydrological conditions, and their patterns of occurrence in the estuary suggest active migration from nearby freshwater habitats draining into this area. Findings indicate that freshwater discharge in the basin and expansion/retraction of freshwaters in the middle-upper lagoon determined patterns of freshwater fish abundance and species richness in the estuarine zone.

Biotic assemblages of aquatic floodplain systems have great potential to randomly reshuffle during annual flood periods, and have been described both as stochastically and deterministically assembled. However, only a limited number of studies have been conducted in relatively few habitat types. To evaluate large-bodied fish assemblage structure of floodplain creeks, we used experimental gill nets to sample fishes at sites spaced at even intervals within three creeks in consecutive dry seasons. A total of 60 species were collected, 41 of which were collected both years. The most frequently collected species were piscivores and algivores/detritivores. Multivariate analysis suggested non-random patterns of assemblage structure in both years. Correspondence analysis (CA) of the species abundance-by-site matrix for 2001 suggests species assemblages were most similar among sites within the same creek regardless of depth or longitudinal position. Discriminant function analysis (DFA) correctly predicted 100% of samples based on creek identity, and species ordination scores revealed creek-specific species subsets. In 2002, CA and DFA did not distinguish creeks based on species assemblages. Instead, we observed a significant positive relationship between assemblage composition and site depth and position along the creek longitudinal gradient. Assemblages were most similar among sites of comparable depth and longitudinal position, regardless of creek identity. Predators occurred almost exclusively at mouth and mid-reach sites. Flood duration prior to our 2002 sampling period was prolonged due to abnormally heavy rainfall in November and December 2001 (typically the falling-water period), and may account for the observed inter-annual variation in fish assemblage structure.

We report the development of nine polymorphic nuclear-encoded microsatellite DNA loci for the African bonytongue (Heterotis niloticus), the only species of the osteoglossiform family Arapaimidae distributed in the Eastern Hemisphere. We describe the process to isolate these loci, and the primers and conditions for amplifying them using the polymerase chain reaction. We tested these primers with a sample of 40 individuals from two natural populations in Benin, West Africa. The number of alleles for the nine microsatellites ranged from 2 to 9, observed heterozygosity from 0.125 to 0.882, and expected heterozygosity from 0.156 to 0.810. No significant deviations from Hardy–Weinberg equilibrium or linkage disequilibrium were observed, and there is no indication of null alleles.

The population structure, abundance, reproductive status, and feeding interrelationships of eleotrid fishes from two freshwater streams of the Caribbean coast of Costa Rica were investigated over 10 continuous months. Eleotris amblyopsis was abundant in both streams. Dormitator maculatus, Eleotris pisonis, and Gobiomorus dormitor were present in both streams but common only in the larger stream that contained dense growth of floating aquatic macrophytes. Dormitator maculatus is a detritivore and overlaps with the other three eleotrids, all of which had diets dominated by shrimp and fishes. Intraguild predation and cannibalism was documented with E. amblyopsis as the prey. Except for the benthic G. dormitor, eleotrids were associated with dense mats of floating macrophytes in the large stream, and leaf peaks in the small stream. Diet similarity among the three carnivorous eleotrids declined during the wet seasons, the period when their prey disperse at lower per-unit-area densities within the flooded forests that surround the streams. Analysis of population size distributions and gonadal maturation indicated that at least some reproduction occurs on a nearly year-round basis within these eleotrid populations. The spring dry period may be associated with migration of ripe eleotrids to estuarine habitats for spawning. Juvenile Eleotris are the dominant fishes in the ‘tismiche’, mass migrations of juvenile shrimp and fish larvae and juveniles that enter and ascend the estuary, especially during the summer wet season.