1. Comprehensive DNA methylation analysis of the Aedes aegypti genome
- Author
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Frank Lyko, George Dimopoulos, Seokyoung Kang, Cassandra Falckenhayn, Vitor Coutinho Carneiro, Marcelo Rosado Fantappié, Mark Helm, Anderson de Mendonça Amarante, Katharina Schmid, and Katharina Hanna
- Subjects
DNA, Bacterial ,0301 basic medicine ,Bisulfite sequencing ,DNA methyltransferase ,Article ,Mass Spectrometry ,03 medical and health sciences ,0302 clinical medicine ,RNA, Transfer ,Aedes ,Animals ,Amino Acid Sequence ,DNA (Cytosine-5-)-Methyltransferases ,Epigenetics ,Genetics ,Genome ,Multidisciplinary ,TRNA methylation ,Sequence Homology, Amino Acid ,Whole Genome Sequencing ,biology ,TRNA Methyltransferase ,Sequence Analysis, DNA ,Methylation ,DNA Methylation ,030104 developmental biology ,030220 oncology & carcinogenesis ,DNA methylation ,biology.protein ,Insect Proteins ,Demethylase ,Sequence Alignment - Abstract
Aedes aegypti mosquitoes are important vectors of viral diseases. Mosquito host factors play key roles in virus control and it has been suggested that dengue virus replication is regulated by Dnmt2-mediated DNA methylation. However, recent studies have shown that Dnmt2 is a tRNA methyltransferase and that Dnmt2-dependent methylomes lack defined DNA methylation patterns, thus necessitating a systematic re-evaluation of the mosquito genome methylation status. We have now searched the Ae. aegypti genome for candidate DNA modification enzymes. This failed to reveal any known (cytosine-5) DNA methyltransferases, but identified homologues for the Dnmt2 tRNA methyltransferase, the Mettl4 (adenine-6) DNA methyltransferase, and the Tet DNA demethylase. All genes were expressed at variable levels throughout mosquito development. Mass spectrometry demonstrated that DNA methylation levels were several orders of magnitude below the levels that are usually detected in organisms with DNA methylation-dependent epigenetic regulation. Furthermore, whole-genome bisulfite sequencing failed to reveal any evidence of defined DNA methylation patterns. These results suggest that the Ae. aegypti genome is unmethylated. Interestingly, additional RNA bisulfite sequencing provided first evidence for Dnmt2-mediated tRNA methylation in mosquitoes. These findings have important implications for understanding the mechanism of Dnmt2-dependent virus regulation.
- Published
- 2016