1. Whole transcriptome targeted gene quantification provides new insights on pulmonary sarcomatoid carcinomas
- Author
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Rossella Bruno, Franca Melfi, Antonella Monticelli, Sara Ricciardi, Paolo Piaggi, Greta Alì, Ornella Affinito, Sergio Cocozza, Antonio Chella, Anello Marcello Poma, Marco Lucchi, Gabriella Fontanini, Alì, Greta, Bruno, Rossella, Poma, Anello Marcello, Affinito, Ornella, Monticelli, Antonella, Piaggi, Paolo, Ricciardi, Sara, Lucchi, Marco, Melfi, Franca, Chella, Antonio, Cocozza, Sergio, and Fontanini, Gabriella
- Subjects
Male ,0301 basic medicine ,Lung Neoplasms ,endocrine system diseases ,Sequence analysis ,lcsh:Medicine ,Biology ,digestive system ,Article ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Fanconi anemia ,medicine ,Humans ,lcsh:Science ,Lung cancer ,Gene ,Aged ,Multidisciplinary ,Oncogene ,Gene Expression Profiling ,lcsh:R ,digestive, oral, and skin physiology ,Middle Aged ,medicine.disease ,Pulmonary sarcomatoid carcinomas ,Bioinformatics analyses ,digestive system diseases ,Gene expression profiling ,030104 developmental biology ,Cancer research ,Immunohistochemistry ,lcsh:Q ,Female ,Sequence Analysis ,030217 neurology & neurosurgery - Abstract
Pulmonary sarcomatoid carcinomas (PSC) are a rare group of lung cancer with a median overall survival of 9–12 months. PSC are divided into five histotypes, challenging to diagnose and treat. The identification of PSC biomarkers is warranted, but PSC molecular profile remains to be defined. Herein, a targeted whole transcriptome analysis was performed on 14 PSC samples, evaluated also for the presence of the main oncogene mutations and rearrangements. PSC expression data were compared with transcriptome data of lung adenocarcinomas (LUAD) and squamous cell carcinomas (LUSC) from The Cancer Genome Atlas. Deregulated genes were used for pathway enrichment analysis; the most representative genes were tested by immunohistochemistry (IHC) in an independent cohort (30 PSC, 31 LUAD, 31 LUSC). All PSC cases were investigated for PD-L1 expression. Thirty-eight genes deregulated in PSC were identified, among these IGJ and SLMAP were confirmed by IHC. Moreover, Forkhead box signaling and Fanconi anemia pathways were specifically enriched in PSC. Finally, some PSC harboured alterations in genes targetable by tyrosine kinase inhibitors, as EGFR and MET. We provide a deep molecular characterization of PSC; the identification of specific molecular profiles, besides increasing our knowledge on PSC biology, might suggest new strategies to improve patients management.
- Published
- 2019
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