1. Effect of axial ligands on the mechanisms of action of Ru(III) complexes structurally similar to NAMI-A: a DFT study
- Author
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P. K. Shukla and Pramod Kumar Shah
- Subjects
010405 organic chemistry ,Chemistry ,Ligand ,Guanine ,Aquation ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Chloride ,Medicinal chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,Reaction rate constant ,medicine ,Molecule ,NAMI-A ,Density functional theory ,Physical and Theoretical Chemistry ,medicine.drug - Abstract
Although the mechanisms of action of Ru(III) anticancer drugs including NAMI-A and KP1019 are not properly understood, it is reported that they are readily aquated in vivo before reacting to the biological targets and their cytotoxic activities are mainly attributed to their binding with DNA. In the present contribution in order to understand how changing the axial ligands affects the mechanisms of action of Ru(III)-based drugs which are structurally similar to NAMI-A, we study here the aquation reactions (substitution of one chloride anion (Cl−) ligand by a water molecule) of six structurally similar Ru(III) complexes (1–6) including NAMI-A (complex 1) and KP1019 (complex 2) as well as the reactions of their mono-aquated products with the N3, N7 and O6 sites of guanine at the M06-2X/(LanL2DZ+6-311+G**)//M06-2X/(LanL2DZ+6-31G**) level of density functional theory in gas phase and aqueous media. It is found that the aquation reaction of every Ru(III) complex occurs through a single transition state where a chloride ligand of the complex is replaced by a H2O molecule. The activation free energies (ΔGb) and rate constants of aquation reactions show that the complex 6 would get aquated in biological media more readily than other complexes. The rate constant of aquation of complex 6 is 7.98 × 10−3 s−1. It is evident from our calculations that axial ligands play important role in the aquation of Ru(III) complexes structurally similar to NAMI-A, but they do not obey any specific trends. Both the calculated reaction enthalpies (ΔHf) and reaction free energies (ΔGf) show that reactions of Ru(III) complexes (1–6) at the N3, N7 and O6 sites of guanine are exothermic and would occur spontaneously. It is found that KP1019 would react more favourably than NAMI-A at the N3, N7 and O6 of guanine, in agreement with experimental observations. Further, among all the complexes studied here, reactions of complex 6 at the different sites of guanine are most exothermic in aqueous media.
- Published
- 2019
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