1. Systematic approach to Escherichia coli cell population control using a genetic lysis circuit
- Author
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Tsu-Chun Yu, Chih-Yuan Hsu, Ling-Jiun Lin, Rei-Hsing Hu, and Bor-Sen Chen
- Subjects
Lysis ,Cell Survival ,Systems biology ,Gene regulatory network ,Cell Count ,Computational biology ,Biology ,medicine.disease_cause ,Cell population control ,Structural Biology ,Modelling and Simulation ,Component (UML) ,Escherichia coli ,medicine ,Computer Simulation ,Gene Regulatory Networks ,Promoter-RBS library ,Molecular Biology ,Gene ,Genetic lysis circuit ,Cell Proliferation ,Electronic circuit ,Feedback, Physiological ,Genetics ,Models, Genetic ,Research ,Escherichia coli Proteins ,Applied Mathematics ,Gene Expression Regulation, Bacterial ,Recombinant Proteins ,Computer Science Applications ,Genetic Enhancement ,Modeling and Simulation ,Registry of Standard Biological Parts ,Signal Transduction - Abstract
Background: Cell population control allows for the maintenance of a specific cell population density. In this study, we use lysis gene BBa_K117000 from the Registry of Standard Biological Parts, formed by MIT, to lyse Escherichia coli (E. coli). The lysis gene is regulated by a synthetic genetic lysis circuit, using an inducer-regulated promoter-RBS component. To make the design more easily, it is necessary to provide a systematic approach for a genetic lysis circuit to achieve control of cell population density. Results: Firstly, the lytic ability of the constructed genetic lysis circuit is described by the relationship between the promoter-RBS components and inducer concentration in a steady state model. Then, three types of promoter-RBS libraries are established. Finally, according to design specifications, a systematic design approach is proposed to provide synthetic biologists with a prescribed I/O response by selecting proper promoter-RBS component set in combination with suitable inducer concentrations, within a feasible range. Conclusion: This study provides an important systematic design method for the development of next-generation synthetic gene circuits, from component library construction to genetic circuit assembly. In future, when libraries are more complete, more precise cell density control can be achieved.
- Published
- 2014