1. A variant in LMX1A causes autosomal recessive severe-to-profound hearing impairment.
- Author
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Schrauwen I, Chakchouk I, Liaqat K, Jan A, Nasir A, Hussain S, Nickerson DA, Bamshad MJ, Ullah A, Ahmad W, and Leal SM
- Subjects
- Adolescent, Adult, Animals, Child, Disease Models, Animal, Ear, Inner physiopathology, Female, Genes, Dominant, Genes, Recessive, Hearing Loss physiopathology, Hearing Loss, Sensorineural physiopathology, Homozygote, Humans, LIM-Homeodomain Proteins chemistry, Male, Mice, Mutation, Missense, Pedigree, Transcription Factors chemistry, Exome Sequencing, Hearing Loss genetics, Hearing Loss, Sensorineural genetics, LIM-Homeodomain Proteins genetics, Transcription Factors genetics
- Abstract
Hereditary hearing impairment is a common sensory disorder that is genetically and phenotypically heterogeneous. In this study, we used a homozygosity mapping and exome sequencing strategy to study a consanguineous Pakistani family with autosomal recessive severe-to-profound hearing impairment. This led to the identification of a missense variant (p.Ile369Thr) in the LMX1A gene affecting a conserved residue in the C-terminus of the protein, which was predicted damaging by an in silico bioinformatics analysis. The p.Ile369Thr variant disrupts several C-terminal and homeodomain residue interactions, including an interaction with homeodomain residue p.Val241 that was previously found to be involved in autosomal dominant progressive HI. LIM-homeodomain factor Lmx1a is expressed in the inner ear through development, shows a progressive restriction to non-sensory epithelia, and is important in the separation of the sensory and non-sensory domains in the inner ear. Homozygous Lmx1a mutant mice (Dreher) are deaf with dysmorphic ears with an abnormal morphogenesis and fused and misshapen sensory organs; however, computed tomography performed on a hearing-impaired family member did not reveal any cochleovestibular malformations. Our results suggest that LMX1A is involved in both human autosomal recessive and dominant sensorineural hearing impairment.
- Published
- 2018
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