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The online version of this article (doi:10.1007/s11032-015-0329-y) contains supplementary material, which is available to authorized users., [EN] Tomato yellow leaf curl virus (TYLCV) hampers tomato production worldwide. Our previous studies have focussed on mapping and ultimately cloning of the TYLCV resistance genes Ty-1 and Ty-3. Both genes are derived from Solanum chilense and were shown to be allelic. They code for an RNA-dependent RNA polymerase (RDR) belonging to the RDR gamma type defined by a DFDGD catalytic domain. In this study, we first fine-mapped the TYLCV resistance in S. chilense LA1932, LA1960 and LA1971. Results showed that chromosomal intervals of the causal genes in these TYLCV-resistant accessions overlap and cover the region where Ty-1/Ty-3 is located. Further, virus-induced gene silencing was used to silence Ty-1/Ty-3 in tomato lines carrying TYLCV resistance introgressed from S. chilense LA1932, LA1938 and LA1971. Results showed that silencing Ty-1/Ty-3 compromised the resistance in lines derived from S. chilense LA1932 and LA1938. The LA1971-derived material remained resistant upon silencing Ty-1/Ty-3. Further, we studied the allelic variation of the Ty-1/Ty-3 gene by examining cDNA sequences from nine S. chilense-derived lines/accessions and more than 80 tomato cultivars, landraces and accessions of related wild species. The DFDGD catalytic domain of the Ty-1/Ty-3 gene is conserved among all tomato lines and species analysed. In addition, the 12 base pair insertion at the 5-prime part of the Ty-1/Ty-3 gene was found not to be specific for the TYLCV resistance allele. However, compared with the susceptible ty-1 allele, the Ty-1/Ty-3 allele is characterized by three specific amino acids shared by seven TYLCV-resistant S. chilense accessions or derived lines. Thus, Ty-1/Ty-3-specific markers can be developed based on these polymorphisms. Elevated transcript levels were observed for all tested S. chilense RDR alleles (both Ty-1 and ty-1 alleles), demonstrating that elevated expression level is not a good selection criterion for a functional Ty-1/Ty-3 allele.

Resistance to Tomato yellow leaf curl virus (TYLCV) and Tomato spotted wilt virus (TSWV), among other diseases, has been reported in Solanum peruvianum PI 126944. Introgression lines (ILs) from S. peruvianum PI 126944 into the genetic background of cultivated tomato (S. lycopersicum) are being developed. Several generations were derived from three interspecific hybrids previously obtained.A lot of crosses and embryo rescue were required until the third backcross, due to the high degree of incompatibility existing between tomato and PI 126944. Crosses between F1 plants were made to obtain a pseudo-F2 generation. The same procedure was followed up to the pseudo-F6 generation. Additional crosses between plants of different generations were made in order to increase progeny. Of 263 molecular markers tested, 105 were polymorphic between tomato and PI 126944. This set of polymorphic markers consisted of 90 simple sequence repeats (SSR) and 15 cleaved amplified polymorphic sequences (CAPS). The amount of the S. peruvianum genome was reduced in advancing generations and this was coupled in some cases with a reduction of incompatibility. However, the S. peruvianum genome was almost completely represented among the different plants of the most advanced generations. ILs will be basically developed from them. Some of the generations developed were resistant to TYLCV and TSWV.

Resistance to Tomato yellow leaf curl virus (TYLCV) and Tomato spotted wilt virus (TSWV), among other diseases, has been reported in Solanum peruvianum PI 126944. Introgression lines (ILs) from S. peruvianum PI 126944 into the genetic background of cultivated tomato (S. lycopersicum) are being developed. Several generations were derived from three interspecific hybrids previously obtained.A lot of crosses and embryo rescue were required until the third backcross, due to the high degree of incompatibility existing between tomato and PI 126944. Crosses between F1 plants were made to obtain a pseudo-F2 generation. The same procedure was followed up to the pseudo-F6 generation. Additional crosses between plants of different generations were made in order to increase progeny. Of 263 molecular markers tested, 105 were polymorphic between tomato and PI 126944. This set of polymorphic markers consisted of 90 simple sequence repeats (SSR) and 15 cleaved amplified polymorphic sequences (CAPS). The amount of the S. peruvianum genome was reduced in advancing generations and this was coupled in some cases with a reduction of incompatibility. However, the S. peruvianum genome was almost completely represented among the different plants of the most advanced generations. ILs will be basically developed from them. Some of the generations developed were resistant to TYLCV and TSWV.