1. Replication timing of human chromosome 6.
- Author
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Woodfine K, Beare DM, Ichimura K, Debernardi S, Mungall AJ, Fiegler H, Collins VP, Carter NP, and Dunham I
- Subjects
- Cell Line, Chromosome Mapping, Cytosine analysis, DNA chemistry, DNA genetics, DNA Repeat Expansion, Epigenesis, Genetic, G1 Phase genetics, G1 Phase physiology, Gene Expression Regulation, Guanine analysis, Humans, Major Histocompatibility Complex genetics, S Phase genetics, S Phase physiology, Transcription, Genetic, Chromosomes, Human, Pair 6 genetics, Chromosomes, Human, Pair 6 physiology, DNA Replication Timing, Oligonucleotide Array Sequence Analysis methods
- Abstract
Genomic microarrays have been used to assess DNA replication timing in a variety of eukaryotic organisms. A replication timing map of the human genome has already been published at a 1Mb resolution. Here we describe how the same method can be used to assess the replication timing of chromosome 6 with a greater resolution using an array of overlapping tile path clones. We report the replication timing map of the whole of chromosome 6 in general, and the MHC region in particular. Positive correlations are observed between replication timing and a number of genomic features including GC content, repeat content and transcriptional activity.
- Published
- 2005
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