31 results on '"Daggett, Valerie"'
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2. Conserved patterns and interactions in the unfolding transition state across SH3 domain structural homologues
3. Myosin dynamics during relaxation in mouse soleus muscle and modulation by 2′‐deoxy‐ATP
4. Tumorigenic p53 mutants undergo common structural disruptions including conversion to α‐sheet structure
5. A Carboxylate to Amide Substitution That Switches Protein Folds
6. Simulations of membrane-bound diglycosylated human prion protein reveal potential protective mechanisms against misfolding
7. Molecular mechanisms underlying deoxy-ADP.Pi activation of pre-powerstroke myosin
8. Structural and functional diversity among amyloid proteins: Agents of disease, building blocks of biology, and implications for molecular engineering
9. Dynameomics: Data-driven methods and models for utilizing large-scale protein structure repositories for improving fragment-based loop prediction
10. Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine-lysine distances
11. When a domain is not a domain, and why it is important to properly filter proteins in databases
12. Understanding protein unfolding from molecular simulations
13. A temperature‐dependent conformational change of NADH oxidase from Thermus thermophilus HB8
14. The dynameomics rotamer library: Amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water
15. Characterization of cell-surface prion protein relative to its recombinant analogue: insights from molecular dynamics simulations of diglycosylated, membrane-bound human prion protein
16. A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary
17. Dynameomics: Large‐scale assessment of native protein flexibility
18. The role of the turn in β-hairpin formation during WW domain folding
19. α-Sheet: The Toxic Conformer in Amyloid Diseases?
20. Protein Folding—Simulation
21. Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent
22. The role of α-, 310-, and π-helix in helix→coil transitions
23. The molecular basis of the temperature‐ and pH‐induced conformational transitions in elastin‐based peptides
24. ChemInform Abstract: Molecular Dynamics Simulations of the Protein Unfolding/Folding Reaction
25. The effects of disulfide bonds on the denatured state of barnase
26. Molecular dynamics simulations of hydrophobic collapse of ubiquitin
27. Conformational search using a molecular dynamics-minimization procedure: Applications to clusters of coulombic charges, Lennard-Jones particles, and waters
28. A molecular dynamics simulation of polyalanine: An analysis of equilibrium motions and helix–coil transitions
29. Molecular dynamics simulations of small peptides: Dependence on dielectric model and pH
30. Structural and functional diversity among amyloid proteins: Agents of disease, building blocks of biology, and implications for molecular engineering.
31. The molecular basis of the temperature- and pH-induced conformational transitions in elastin-based peptides.
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