1. Cardiac substructure segmentation with deep learning for improved cardiac sparing
- Author
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Ahmed I Ghanem, Milan Pantelic, Eleanor M. Walker, Eric D. Morris, Carri K Glide-Hurst, and Ming Dong
- Subjects
Wilcoxon signed-rank test ,medicine.medical_treatment ,Radiation Dosage ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Deep Learning ,0302 clinical medicine ,Image Processing, Computer-Assisted ,medicine ,Humans ,Segmentation ,Radiation treatment planning ,Ground truth ,medicine.diagnostic_test ,Phantoms, Imaging ,business.industry ,Heart ,Magnetic resonance imaging ,General Medicine ,Coronary arteries ,Radiation therapy ,medicine.anatomical_structure ,Great vessels ,030220 oncology & carcinogenesis ,Feasibility Studies ,business ,Nuclear medicine - Abstract
PURPOSE: Radiation dose to cardiac substructures is related to radiation-induced heart disease. However, substructures are not considered in radiation therapy planning (RTP) due to poor visualization on CT. Therefore, we developed a novel deep learning (DL) pipeline leveraging MRI’s soft tissue contrast coupled with CT for state-of-the-art cardiac substructure segmentation requiring a single, non-contrast CT input. MATERIALS/METHODS: Thirty-two left-sided whole-breast cancer patients underwent cardiac T2 MRI and CT-simulation. A rigid cardiac-confined MR/CT registration enabled ground truth delineations of 12 substructures (chambers, great vessels (GVs), coronary arteries (CAs), etc.). Paired MRI/CT data (25 patients) were placed into separate image channels to train a three-dimensional (3D) neural network using the entire 3D image. Deep supervision and a Dice-weighted multi-class loss function were applied. Results were assessed pre/post augmentation and post-processing (3D conditional random field (CRF)). Results for 11 test CTs (seven unique patients) were compared to ground truth and a multi-atlas method (MA) via Dice similarity coefficient (DSC), mean distance to agreement (MDA), and Wilcoxon signed-ranks tests. Three physicians evaluated clinical acceptance via consensus scoring (5-point scale). RESULTS: The model stabilized in ~19 h (200 epochs, training error 0.05) to ground truth. In four cases, DL yielded left main CA contours, whereas MA segmentation failed, and provided improved consensus scores in 44/60 comparisons to MA. DL provided clinically acceptable segmentations for all graded patients for 3/4 chambers. DL contour generation took ~14 s per patient. CONCLUSIONS: These promising results suggest DL poses major efficiency and accuracy gains for cardiac substructure segmentation offering high potential for rapid implementation into RTP for improved cardiac sparing.
- Published
- 2019