80 results on '"Zhou, Yaoqi"'
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2. SPOT‐Fold: Fragment‐Free Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map
3. DNA sequence repeats identify numerous Type I restriction‐modification systems that are potential epigenetic regulators controlling phase‐variable regulons; phasevarions
4. SPIN2: Predicting sequence profiles from protein structures using deep neural networks
5. Geochemistry of siltstones of the Early Cretaceous Laiyang Group in Taolin area, Shandong Province, Eastern China: Implications for provenance, source weathering, palaeo‐environment, and tectonic setting
6. Detrital zircon U-Pb geochronology of early Cretaceous sedimentary rocks in Dingzi Bay and Taolin area from the Sulu Orogen: Provenances and tectonic implications
7. Single‐sequence‐based prediction of protein secondary structures and solvent accessibility by deep whole‐sequence learning
8. Self‐derived structure‐disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides
9. Computational Prediction of Carbohydrate‐Binding Proteins and Binding Sites
10. Predicting lysine-malonylation sites of proteins using sequence and predicted structural features
11. SPIN2: Predicting sequence profiles from protein structures using deep neural networks
12. Two-dimensional Numerical Modeling Research on Continent Subduction Dynamics
13. The Missing Time Calculation of the Hiatus Surface: A Case Study of the Upper Permian Reef Section the Platform Margin, Ziyun, Guizhou
14. Geochemical Anomaly at the Devonian / Carboniferous Boundary, Huangmao, Guangxi, China
15. B‐factor profile prediction for RNA flexibility using support vector machines
16. SPOT‐Ligand: Fast and effective structure‐based virtual screening by binding homology search according to ligand and receptor similarity
17. s DFIRE : Sequence‐specific statistical energy function for protein structure prediction by decoy selections
18. Sequence‐based prediction of protein–peptide binding sites using support vector machine
19. Effective protein conformational sampling based on predicted torsion angles
20. Coal-derived Gas Accumulation Characteristics and Exploration Prospects of Upper Paleozoic in Eastern Linqing Depression
21. Progress in Research Methods on “Fluid-Diagenesis” Interactions of Fractures in Tight Reservoirs
22. Accurate single-sequence prediction of solvent accessible surface area using local and global features
23. Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction
24. Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto‐encoder deep neural network
25. Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles
26. LEAP: Highly accurate prediction of protein loop conformations by integrating coarse‐grained sampling and optimized energy scores with all‐atom refinement of backbone and side chains
27. Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome
28. Template-based structure prediction and classification of transcription factors in Arabidopsis thaliana
29. A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction
30. SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
31. Protein side chain modeling with orientation‐dependent atomic force fields derived by series expansions
32. Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction
33. Improving computational protein design by using structure‐derived sequence profile
34. Refining near-native protein-protein docking decoys by local resampling and energy minimization
35. Consensus scoring for enriching near-native structures from protein-protein docking decoys
36. The dual role of a loop with low loop contact distance in folding and domain swapping
37. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
38. An all‐atom knowledge‐based energy function for protein‐DNA threading, docking decoy discrimination, and prediction of transcription‐factor binding profiles
39. Predicting residue-residue contact maps by a two-layer, integrated neural-network method
40. Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural network
41. Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions
42. Specific interactions for ab initio folding of protein terminal regions with secondary structures
43. Assessing secondary structure assignment of protein structures by using pairwise sequence‐alignment benchmarks
44. A simple reference state makes a significant improvement in near‐native selections from structurally refined docking decoys
45. The helix-coil transition revisited
46. Fold recognition by concurrent use of solvent accessibility and residue depth
47. DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile
48. Real-SPINE: An integrated system of neural networks for real-value prediction of protein structural properties
49. Achieving 80% ten‐fold cross‐validated accuracy for secondary structure prediction by large‐scale training
50. QBES: Predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization
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