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Rationale: Soil microbial heterotrophic C‐CO2 respiration is important for C cycling. Soil CO2 differentiation and quantification are vital for understanding soil C cycling and CO2 emission mitigation. Presently, soil microbial respiration (SR) quantification models are based on native soil organic matter (SOM) and require consistent monitoring of δ13C and CO2. Methods: We present a new apparatus for achieving in situ soil static chamber incubation and simultaneous CO2 and δ13C monitoring by cavity ring‐down spectroscopy (CRDS) coupled with a soil culture and gas introduction module (SCGIM) with multi‐channel. After a meticulous five‐point inter‐calibration, the repeatability of CO2 and δ13C values by using CRDS‐SCGIM were determined, and compared with those obtained using gas chromatography (GC) and isotope ratio mass spectrometry (IRMS), respectively. We examined the method regarding quantifying SR with various concentrations and enrichment of glucose and then applied it to investigate the responses of SR to the addition of different exogenous organic materials (glucose and rice residues) into paddy soils during a 21‐day incubation. Results: The CRDS‐SCGIM CO2 and δ13C measurements were conducted with high precision (< 1.0 µmol/mol and 1‰, respectively). The optimal sampling interval and the amount added were not exceeded 4 h and 200 mg C/100 g dry soil in a 1 L incubation bottle, respectively; the 13C‐enrichment of 3%–7% was appropriate. The total SR rates observed were 0.6–4.2 µL/h/g and the exogenous organic materials induced ‐49%–28% of priming effects in native SOM mineralisation. Conclusions: Our results show that CRDS‐SCGIM is a method suitable for the quantification of soil microbial CO2 respiration, requiring less extensive lab resources than GC/IRMS. [ABSTRACT FROM AUTHOR]

Rationale: The amino acid–nitrogen (AA‐N) isotope analysis of naturally abundant or isotope‐labeled samples is indispensable for tracing nitrogen transfer in soil nitrogen biogeochemical cycling processes. Despite the usefulness of AA‐N isotope analysis, the preparation methods are complex and time‐consuming, and necessitate the use of toxic reagents. Methods: We present an improved, rapid method for AA‐N isotope analysis with high precision. At a high pH, AA‐N was released and oxidized to N2O using ClO− under vacuum. Additionally, purge‐and‐trap isotope ratio mass spectrometry was used to analyze N2O. Moreover, we investigated the effect of various factors on the N2O conversion process with glycine and applied the results to seven representative single‐N AAs (alanine, serine, cysteine, aspartic acid, glutamic acid, leucine, and phenylalanine) and five poly‐N AAs (lysine, arginine, histidine, tryptophan, and asparagine), as well as side‐chain analogs, blank reagent, and other N forms. Results: The concentration of ClO− and the pH were determined to be crucial factors for achieving desirable AA‐N to N2O conversion efficiencies. Glycine‐N had the highest N2O yield of 70%, with isotopic results consistent with those of the reference values at a high precision (within 0.5‰ for natural abundance and 0.01 atom% for 15N‐enrichment) at the nanomolar N level. Additionally, the α‐NH2 AAs were labile, and the single‐N AAs were more easily converted to N2O than poly‐N AAs. With the exception of γ‐aminobutyric acid, the N2O conversion efficiencies of the side‐chain N analogs were very low (below 5%). This method was also applicable to the 15N analysis of the total free AAs in complex soil samples without interference from analytical blanks and other forms of N. Conclusions: Our method is highly selective for the α‐NH2 groups of an amino acid, and the oxidation of the side chain is difficult. In addition, the method is sensitive, rapid, and convenient, and does not require toxic reagents. [ABSTRACT FROM AUTHOR]

Paddies contain 78% higher organic carbon (C) stocks than adjacent upland soils, and iron (Fe) plaque formation on rice roots is one of the mechanisms that traps C. The process sequence, extent and global relevance of this C stabilization mechanism under oxic/anoxic conditions remains unclear. We quantified and localized the contribution of Fe plaque to organic matter stabilization in a microoxic area (rice rhizosphere) and evaluated roles of this C trap for global C sequestration in paddy soils. Visualization and localization of pH by imaging with planar optodes, enzyme activities by zymography, and root exudation by 14C imaging, as well as upscale modeling enabled linkage of three groups of rhizosphere processes that are responsible for C stabilization from the micro‐ (root) to the macro‐ (ecosystem) levels. The 14C activity in soil (reflecting stabilization of rhizodeposits) with Fe2+ addition was 1.4–1.5 times higher than that in the control and phosphate addition soils. Perfect co‐localization of the hotspots of β‐glucosidase activity (by zymography) with root exudation (14C) showed that labile C and high enzyme activities were localized within Fe plaques. Fe2+ addition to soil and its microbial oxidation to Fe3+ by radial oxygen release from rice roots increased Fe plaque (Fe3+) formation by 1.7–2.5 times. The C amounts trapped by Fe plaque increased by 1.1 times after Fe2+ addition. Therefore, Fe plaque formed from amorphous and complex Fe (oxyhydr)oxides on the root surface act as a "rusty sink" for organic matter. Considering the area of coverage of paddy soils globally, upscaling by model revealed the radial oxygen loss from roots and bacterial Fe oxidation may trap up to 130 Mg C in Fe plaques per rice season. This represents an important annual surplus of new and stable C to the existing C pool under long‐term rice cropping. [ABSTRACT FROM AUTHOR]

In arable soils, the topsoil and subsoil are commonly mixed in the operation of deep tillage. It is not yet clear whether the influence of crop straw on soil organic matter (SOM) mineralization of the mixed soil (from the topsoil and subsoil) is different from that of solely the topsoil or subsoil. We conducted a 120‐d incubation experiment with the addition of 13C‐labeled maize (Zea mays L.) straw to study SOM mineralization and straw decomposition in the topsoil (0–15 cm), subsoil (15–30 cm), and their mixture (0–30 cm). Straw addition promoted SOM mineralization and thus induced a positive priming effect. The mineralization of SOM in topsoil with straw addition was 122% higher than in subsoil, and 45% higher than in mixed soil. After the 120‐d incubation, 12–16% of straw C was mineralized as CO2, contributing approximately 50–70% to the total CO2 production. Furthermore, straw C was also incorporated into SOM fractions, with 34, 7, and 59% in the light fraction, particulate organic C (coarse and fine), and mineral‐associated organic C (MAOC) in topsoil, respectively. The SOM mineralization and priming were greater in the topsoil with higher dissolved organic C and NO3–N throughout the incubation. Despite more straw C retained in MAOC in topsoil, the significant decrease in total MAOC with straw addition indicated that SOM turnover induced by fresh C application was probably faster in topsoil than the subsoil and mixed soil. Our findings indicated that both subsoil and mixed soil tended to sequester C with straw addition, whereas topsoil C turnover was faster than subsoil in the presence of straw addition. Core Ideas: SOM mineralization of mixed soil from topsoil and subsoil was quantified. Residue C retained in SOC fractions was also determined. Mixed topsoil and subsoil resulted in an additive effect on the SOM priming. Higher SOC priming and turnover was observed in the topsoil than subsoil. [ABSTRACT FROM AUTHOR]

Root exudates can significantly modify microbial activity and soil organic matter (SOM) mineralization. However, how root exudates and their C/N stoichiometric ratios control rice field (paddy) soil C mineralization is poorly understood. This study used a mixture of glucose, oxalic acid, and alanine as root exudate mimics for three C/N stoichiometric ratios (CN6, CN10, and CN80) to explore the underlying mechanisms involved in SOM mineralization. The input of root exudates enhanced CO2 emissions by 1.8–2.3‐fold that of soil with only C additions (C‐only). Artificial root exudates with low C/N ratios (CN6 and CN10) increased the metabolic quotient (qCO2) by 12% over those with higher stoichiometric ratios (CN80 and C‐only), suggesting a relatively high energy demand for microorganisms to acquire organic N from SOM by increasing N‐hydrolase production. The increase of stoichiometric ratios of C‐ to N‐hydrolase [β‐1,4‐glucosidase to β‐1,4‐N‐acetyl glucosaminidase (NAG)] promoted SOM degradation compared to those involved in organic C‐ and N‐degradation, which had a significant positive correlation with qCO2. The stoichiometric ratios of microbial biomass were positively correlated with C use efficiency, indicating root exudates with higher C/N ratios provide an undersupply of N for microorganisms that trigger the release of N‐degrading extracellular enzymes. Our findings showed that the C/N stoichiometry of root exudates controlled SOM mineralization by affecting the specific response of the microbial biomass through the activity of C‐ and N‐releasing extracellular enzymes to adjust the microbial C/N ratio. [ABSTRACT FROM AUTHOR]

The available carbon (C) to phosphorus (P) ratio in the soil is regulated by extracellular hydrolases for C and P acquisition by microbes and plants. However, the stoichiometric relationship between acquiring C and P in paddy rhizosphere and bulk soils remains unclear. The objective was to explore the underlying mechanisms of C and P acquisition stoichiometry in rhizosphere and bulk soils in response to P fertilization and cellulose addition. Amendment with either cellulose or P separately caused a significant increase in the maximal velocity (Vmax) of C acquisition enzymes (β‐1,4‐glucosidase and β‐cellobiohydrolase) but decreased that of P acquisition enzymes (acid and alkaline phosphomonoesterases) in bulk soil. In contrast, lower Vmax values of C and P acquisition enzymes were observed in rhizosphere soil than in bulk soil. The co‐application of cellulose and P increased the Vmax of P acquisition enzymes in rhizosphere soil but decreased that of only alkaline phosphomonoesterase in bulk soil. Results show that P availability and labile‐C content co‐regulated the P/C acquisition ratio, and two inverse linear relationships were observed. Specifically, the P/C acquisition ratio was negatively related to both the dissolved organic C/Olsen‐P ratio and the microbial biomass C/P ratio in rhizosphere soil. However, the P/C acquisition ratio was positively related to both the dissolved organic C/Olsen‐P ratio and the microbial biomass C/P ratio in bulk soil. Overall, microbes mineralized less organic P to acquire P in paddy soil rhizosphere (i.e., containing higher labile‐C) than in bulk soil (i.e., having lower labile‐C contents). [ABSTRACT FROM AUTHOR]

The global methane (CH4) budget is based on a sensitive balance between methanogenesis and CH4 oxidation (aerobic and anaerobic). The response of these processes to climate warming, however, is not quantified. This largely reflects our lack of knowledge about the temperature sensitivity (Q10) of the anaerobic oxidation of CH4 (AOM)—a ubiquitous process in soils. Based on a 13CH4 labeling experiment, we determined the rate, Q10 and activation energy of AOM and of methanogenesis in a paddy soil at three temperatures (5, 20, 35°C). The rates of AOM and of methanogenesis increased exponentially with temperature, whereby the AOM rate was significantly lower than methanogenesis. Both the activation energy and Q10 of AOM dropped significantly from 5–20 to 20–35°C, indicating that AOM is a highly temperature‐dependent microbial process. Nonetheless, the Q10 of AOM and of methanogenesis were similar at 5–35°C, implying a comparable temperature dependence of AOM and methanogenesis in paddy soil. The continuous increase of AOM Q10 over the 28‐day experiment reflects the successive utilization of electron acceptors according to their thermodynamic efficiency. The basic constant for Q10 of AOM was calculated to be 0.1 units for each 3.2 kJ mol−1 increase of activation energy. We estimate the AOM in paddy soils to consume 2.2~5.5 Tg CH4 per year on a global scale. Considering these results in conjunction with literature data, the terrestrial AOM in total consumes ~30% of overall CH4 production. Our data corroborate a similar Q10 of AOM and methanogenesis. As the rate of AOM in paddy soils is lower than methanogenesis, however, it will not fully compensate for an increased methane production under climate warming. [ABSTRACT FROM AUTHOR]

Paddy soils make up the largest anthropogenic wetlands on earth, and are characterized by a prominent potential for organic carbon (C) sequestration. By quantifying the plant‐ and microbial‐derived C in soils across four climate zones, we identified that organic C accrual is achieved via contrasting pathways in paddy and upland soils. Paddies are 39%–127% more efficient in soil organic C (SOC) sequestration than their adjacent upland counterparts, with greater differences in warmer than cooler climates. Upland soils are more replenished by microbial‐derived C, whereas paddy soils are enriched with a greater proportion of plant‐derived C, because of the retarded microbial decomposition under anaerobic conditions induced by the flooding of paddies. Under both land‐use types, the maximal contribution of plant residues to SOC is at intermediate mean annual temperature (15–20°C), neutral soil (pH~7.3), and low clay/sand ratio. By contrast, high temperature (~24°C), low soil pH (~5), and large clay/sand ratio are favorable for strengthening the contribution of microbial necromass. The greater contribution of microbial necromass to SOC in waterlogged paddies in warmer climates is likely due to the fast anabolism from bacteria, whereas fungi are unlikely to be involved as they are aerobic. In the scenario of land‐use conversion from paddy to upland, a total of 504 Tg C may be lost as CO2 from paddy soils (0–15 cm) solely in eastern China, with 90% released from the less protected plant‐derived C. Hence, preserving paddy systems and other anthropogenic wetlands and increasing their C storage through sustainable management are critical for maintaining global soil C stock and mitigating climate change. [ABSTRACT FROM AUTHOR]

Activity of microorganisms and their turnover strongly affect soil organic carbon (SOC) accumulation. However, what remains unclear is how long‐term fertilization affects the microorganisms growth strategies, and how they change with the soil depth. Thus, microbial carbon‐use efficiency (CUE) and microbial biomass (MB) turnover in paddy soil were determined using a novel substrate‐independent H218O labelling approach, and the effects of long‐term fertilization (>30 years) with mineral (NPK) or combined (NPK + OM [manure]) amendments in 0–10, 10–20, and 20–30 cm depths were investigated. Long‐term fertilization increased microbial C uptake, CUE, and growth rates, and all indexes were the highest in the NPK + OM treatment. The CUE ranged between 0.07 and 0.23 and showed variable behaviour with depth: it reduced in the control treatment, indicating that more C was allocated to energy production than biomass growth, and increased in fertilized soils, showing the shift of C usage for biomass growth. The highest CUE was observed at 20–30 cm in NPK and NPK + OM, and indicated that microorganisms overcome the nutrient deficiency in deep soil layers by keeping high C uptake rates at a constant CUE. The MB turnover was more rapid in NPK (70–10 d) and NPK + OM (65–40 d) compared to the control (80–90 d) and intensified with the depth. These findings highlight that the decrease in C uptake under long‐term fertilization with soil depth compensated by an increase in CUE. These shifts in the strategies of microorganisms functioning can explain the accumulation of SOC in heavily fertilized paddy soils. [ABSTRACT FROM AUTHOR]

While high soil carbon stability had been well known for biochar‐amended soils, how conversion of crop residues into biochar and subsequent biochar amendment (BA) would favor microbial carbon use and carbon sequestration had not been clearly understood. In this study, topsoil samples were collected from an upland soil and a paddy soil, both previously amended with straw and straw‐derived biochar. These samples were incubated with 13C‐labeled maize residue (LMR) for 140 days to compare carbon mineralization, metabolic quotient (qCO2), and microbial carbon use efficiency (CUE) under laboratory incubation. 13C‐phospholipid fatty acid (13C‐PLFA) was used to trace the use of substrate carbon by soil microorganisms. Comparing to straw amendment (SA), BA significantly decreased the native soil organic carbon (SOC) mineralization rates by 19.7%–20.1% and 9.2%–12.0% in the upland and paddy soils, respectively. Meanwhile, total carbon mineralization from the newly added LMR was significantly decreased by 12.9% and 11.1% in the biochar‐amended soils, compared with the straw‐amended soils from the upland and paddy sites, respectively. Furthermore, compared to non‐amended soils, the qCO2 value was unchanged in straw‐amended soils, but was notably decreased by 15.2%–18.6% and 8.9%–12.5% in biochar‐amended upland and paddy soils, respectively. Microbial CUE was significantly greater in biochar‐amended soils than in straw‐amended soils due to the increasing dominance of fungi in carbon utilization. Compared to SA, BA increased CUE by 23.0% in the upland soil and 21.2% in the paddy soil. This study suggests that BA could outperform SA in the long term to enhance the biological carbon sequestration potential of both upland and paddy soils. This could be due mainly to biochar input as a special substrate to promote microbial community evolution and increase the fungal utilization of carbon substrates, especially for the soil with lower SOC levels. [ABSTRACT FROM AUTHOR]

Increased availability of soil phosphorus (P) has recently been recognised as an underlying driving factor for the positive relationship between plant diversity and ecosystem function. The effects of plant diversity on the bioavailable forms of P involved in biologically mediated rhizospheric processes and how the link between plant and soil microbial diversity facilitates soil P bioavailability, however, remain poorly understood.This study quantified four forms of bioavailable P (CaCl2‐P, citric‐P, enzyme‐P and HCl‐P) in mature subtropical forests using a novel biologically based approach, which emulates how rhizospheric processes influence the release and supply of available P. Soil microbial diversity was measured by Illumina high‐throughput sequencing.Our results suggest that tree species richness significantly affects soil microbial diversity (p < 0.05), increases litter decomposition, fine‐root biomass and length and soil organic carbon and thus increases the four forms of bioavailable P. A structural equation model that links plants, soil microbes and P forms indicated that soil bacterial and fungal diversity play dominant roles in mediating the effects of tree species richness on soil P bioavailability.An increase in the biodiversity of plants, soil bacteria and fungi could maintain soil P bioavailability and alleviate soil P limitations. Our results imply that biodiversity strengthens plant and soil feedback and increases P recycling. A plain language summary is available for this article. [ABSTRACT FROM AUTHOR]

The photosynthate carbon (C) released in the rhizosphere plays a crucial role in C sequestration, microbial activities and nutrient availability in soil. Nitrogen (N) fertilization modifies the allocation and dynamics of photosynthates in paddy rice systems, but these effects depend on plant growth stages. Rice (Oryza sativa L.) plants were pulse labelled with 13CO2 at the tillering, elongation, heading and grain‐filling stages with 0 and 225 kg N ha−1 fertilizer. The plants and soil were sampled shortly after each pulse labelling and at harvest. Relative 13C (as % of assimilated C) in the roots and rhizosphere soil was largest at the early growth stage (tillering) and subsequently decreased. At harvest, 68% of the rhizodeposited C remained in bulk soil without N fertilizer, which corresponded to 6.2% of the net assimilated 13C. The absolute amount of net belowground C input (root + rhizodeposition) by rice was 268 and 468 kg C ha−1 under 0 and 225 kg N ha−1 fertilizer, of which rhizodeposition accounted for 60 and 40%, respectively. We concluded that N fertilization raised the belowground C input by rice mainly by increasing root biomass rather than by rhizodeposition. Highlights: Rice photosynthesis‐derived carbon (C) was quantified in soil by multiple pulse labelling with 13CO2Young rice plants allocated more assimilates into the soil compared to mature plantsNitrogen deficiency led to greater C retention in bulk soil than in the rhizosphereNitrogen fertilization increased the net belowground C input mainly with larger root biomass [ABSTRACT FROM AUTHOR]

The cover image is based on the Original Article Stoichiometric theory shapes enzyme kinetics in paddy bulk soil but not in rhizosphere soil by Ge Tida et al., https://doi.org/10.1002/ldr.4141. [ABSTRACT FROM AUTHOR]