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Summary The distribution of genets of a root and butt rot pathogen Heterobasidion parviporum was studied in a 68-year-old Abies sachalinensis plantation in Japan. A total of 33 pure cultures of H. parviporum were isolated from diseased Todo fir stumps after clear-felling. Individual genets of the fungus were identified by three different methods: somatic incompatibility test, random amplified polymorphic DNA, and DNA microsatellite analyses. The combined results of the three analyses identified at least eight genets within a 60 × 100 m plot. One genet, consisting of only one isolate, was genetically differentiated from the other genets by all three methods; the other 32 isolates, however, were grouped with minor discrepancies, into seven genetically close genets. The genetic differentiation was lower than that recorded previously in Europe. A single genet infected 1-15 trees in the plot. The longest distance of the two most isolated trees of a single genet was 51 m. The close genetic relationship between genets and their large sizes suggest that basidiospores from restricted sources (just a few fruiting bodies) infected the site before establishment of the present Todo fir stand and that the disease has spread mainly by vegetative growth of the mycelia through root contact. Absence of fruiting bodies of the fungus in the study plot also suggests the greater importance of vegetative growth than spore dispersal for the spread of this fungus. [ABSTRACT FROM AUTHOR]