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ABSTRACT In this research, the emulsification method was used to encapsulate Lactobacillus reuteri in microparticles of whey protein concentrate (WPC) at different levels (1%, 2%, and 4%) and gum Arabic (GA) at three levels (0/5%, 1%, and 1/5%) and a constant level of sunflower oil (5%). The results showed that emulsions with higher quantities of wall materials exhibited better encapsulation efficiency (67%/57%) and preservation ability at different temperatures, different pH, and presence of 1% bile salt. During the storage time, the droplet size of the emulsion increased more than two times (from 2.2 to 4.6 μm) and the absolute zeta potential of the optimal emulsion decreased (from −19/63 to −16/76 mV). Encapsulating Lactobacillus reuteri in the stabilized emulsion with the highest concentration of wall material improved the cells' protection during storage. The study also observed a decline in the number of primary encapsulated live cells in the gastrointestinal tract (from 4/32 to 3/58 Log CFU/mL) after 90 days of storage. In the case of the nonencapsulated sample, the initial live population decreased from 2.8 to 1 Log CFU/mL after 90 days of storage. The electron microscope images showed that the emulsions became unstable after 30, 60, and 90 days of storage, but the microbial cells were still visible in the continuous phase. Overall, encapsulating Lactobacillus reuteri using emulsification technique can preserve the probiotics during storage and “in vitro” gastrointestinal digestion. [ABSTRACT FROM AUTHOR]

Kefir traditionally is based on pasteurised milk and the use of other substrates is unusual. Kefir beverages made with raw milk (RMK), pasteurised milk (PMK) or whey (WK), were obtained and fractionated in microbial cells and supernatants. Antioxidant and antibacterial activity of fractions against Cronobacter sakazakii and Escherichia coli were analysed. The highest antioxidant activity was obtained for PMK with values between 8500 and 10 000 μm TE/mg. Microbial extracts from RMK and PMK showed a reduction of C. sakazakii of 7 log units; while microbial extracts and supernatants from RMK decreased E. coli in 3 and 5 log units, respectively. These results indicate that dairy kefir beverages can be an excellent source of defensive agents to fight against bacteria that cause gastrointestinal disorders. [ABSTRACT FROM AUTHOR]

BACKGROUND: This work studied the treatment of a synthetic sphalerite acid mine drainage (AMD). The treatment was carried out by means of a previous concentration stage using electrodialysis, followed by electrodeposition using a bioelectrochemical system (BES). RESULTS: The best concentration results were obtained when operating the electrodialysis at 8 V and at a diluate/concentrate volume ratio of 3. This treatment yielded a concentrate fraction of about 25% of the volume and a clear fraction of about 75% of the volume. The concentrated fraction was treated in a BES for the electrodeposition of the metal contained. By operating a microbial fuel cell (MFC), the spontaneous reactions took place and, in 2 days, all the Fe3+ was reduced to Fe2+; then, all the Cu2+ was electrodeposited as pure Cu0 in about 8 days. The maximum current density attained in this stage was 0.1 mA cm−2 and the maximum power was 0.05 W cm−2. Then, a subsequent operation of a microbial electrolysis cell (MEC) allowed for the simultaneous recovery of the Fe2+, Ni2+, Zn2+, and Cd2+ as a mixed metal mass. CONCLUSION: The electrodialysis yielded a clear effluent representing 75% of the total volume and a concentrated effluent accounting for 25%. It was possible to treat the concentrated effluent in an MFC, recovering pure Cu0 with a net electricity generation. The non‐spontaneous metal reductions were subsequently accomplished by means of MEC, the electricity requirements being lower than those in the case of the raw AMD due to the higher mass transfer rate and the reduction of the Ohmic loses. © 2023 Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

Microbial electrolysis cell (MEC) is gaining importance not only for effectively treating wastewater but also for producing hydrogen. The up‐flow microbial electrolysis cell (UPMEC) is an innovative approach to enhance the efficiency, and substrate degradation. In this study, a baffled UPMEC with an anode divided into three regions by inserting the baffle (sieve) plates at varying distances from the cathode was designed. The effect of process parameters, such as flow rate (10, 15, and 20 mL/min), electrode area (50, 100, and 150 cm2), and catholyte buffer concentration (50, 100, and 150 mM) were investigated using distillery wastewater as substrate. The experimental results showed a maximum of 0.6837 ± 0.02 mmol/L biohydrogen at 150 mM buffer, with 49 ± 1.0% COD reduction using an electrode of area 150 cm2. The maximum current density was 1335.94 mA/m2 for the flow rate of 15 mL/min and surface area of 150 cm2. The results showed that at optimized flow rate and buffer concentration, maximum hydrogen production and effective treatment of wastewater were achieved in the baffled UPMEC. Practitioner Points: Biohydrogen production from distillery wastewater was investigated in a baffled UPMEC.Flowrate, concentration and electrode areas significantly influenced the hydrogen production.Maximum hydrogen (0.6837±0.02mmol/L.day) production and COD reduction (49±1.0%) was achieved at 15 mL/min.Highest CHR of 95.37±1.9 % and OHR of 4.6±0.09 % was observed at 150 mM buffer concentration. [ABSTRACT FROM AUTHOR]

Experimental evolution of microbial cells provides valuable information on evolutionary dynamics, such as mutations that contribute to fitness gain under given selection pressures. Although experimental evolution is a promising tool in evolutionary biology and bioengineering, long‐term culture experiments under multiple environmental conditions often impose an excessive workload on researchers. Therefore, the development of automated systems significantly contributes to the advancement of experimental evolutionary research. This review presents several specialized devices designed for experimental evolution studies, such as an automated system for high‐throughput culture experiments, a culture device that generate a temperature gradient, and an automated ultraviolet (UV) irradiation culture device. The ongoing development of such specialized devices is poised to continually expand new frontiers in experimental evolution research. [ABSTRACT FROM AUTHOR]

This paper deals with the kinetics of microbial cell growth, utilization of organic substrates and methane production in upflow anaerobic filters in two and three separated stages (UAF‐2SS and UAF‐3SS) treating sanitary landfill leachates, under three temperatures (20, 27, and 34°C), fed with volumetric organic loads (VOLs) for UAF‐2SS (1.8, 2.25, 2.76, 3.45, 3.71, 4.64 kgCOD (chemical oxygen demand)/m3/d) and UAF‐3SS (1.7, 2.25, 2.44, 2.6, 3.15, 3.45, 3.5, 4.57, 4.64, 6.31, 11.61, 14.18, 17.48 kgCOD/m3/d). Kinetic parameters were obtained at temperature (20–34°C), pH (8.8–9.1), each one of three stages within the UAF‐2SS and UAF‐3SS reactors containing methanogenic bacteria (Methanococcus sp., and Methanobacterium sp.) and Clostridium sp.: Maximum substrate utilization rate (rm,s) resulted in 102 mg COD/L/h, maximum microbial cell growth rate (μm) varied 102–103 CFU (colony forming units)/mL/h, methane (CH4) production rate (rm,CH4) tended to vary 100–101 mg CH4/d and the maximum production coefficient (Y) varied 0–102 CFU/mL/h/mgCOD/L/h. [ABSTRACT FROM AUTHOR]

BACKGROUND: Flax lignan has attracted much attention because of its potential bioactivities. However, the bioavailability of secoisolariciresinol diglucoside (SDG), the main lignan in flaxseed, depends on the bioconversion by the colon bacteria. Lactic acid bacteria (LAB) with β‐glucosidase activity has found wide application in preparing bioactive aglycone. RESULTS: LAB strains with good β‐glucosidase activity were isolated from fermented tofu. Their bioconversion of flax lignan extract was investigated by resting cell catalysis and microbial fermentation, and the metabolism of SDG by Lactiplantibacillus plantarum C5 following fermentation was characterized by widely targeted metabolomics. Five L. plantarum strains producing β‐glucosidase with broad substrate specificity were isolated and identified, and they all can transform SDG into secoisolariciresinol (SECO). L. plantarum C5 resting cell reached a maximum SDG conversion of 49.19 ± 3.75%, and SECO generation of 21.49 ± 1.32% (0.215 ± 0.013 mm) at an SDG substrate concentration of 1 mM and 0.477 ± 0.003 mm SECO was produced at 4 mm within 24 h. Although sixteen flax lignan metabolites were identified following the fermentation of SDG extract by L. plantarum C5, among them, four were produced following the fermentation: SECO, demethyl‐SECO, demethyl‐dehydroxy‐SECO and isolariciresinol. Moreover, seven lignans increased significantly. CONCLUSION: Fermentation significantly increased the profile and level of flax lignan metabolites, and the resting cell catalysis benefits from higher bioconversion efficiency and more straightforward product separation. Resting cell catalysis and microbial fermentation of flax lignan extract by the isolated β‐glucosidase production L. plantarum could be potentially applied in preparing flax lignan ingredients and fermented flaxseed. © 2024 Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

This study aims to improve the performance of microbial desalination cell (MDC) using Vigna mungo (Black gram) wash water, reported for the first time as an anolyte utilizing a graphite plate and carbon brush as the anode. Power generation was facilitated by the exoelectrogen, Shewanella putrefaciens MTCC 8104. Polarization studies revealed that the graphite plate MDC attained a high power density of 2720 ± 50 μW/m2 compared to carbon brush for two electrode pairs. The COD removal and desalination efficiency were better for carbon brush MDC, achieving 58.17 ± 2% and 38.14 ± 2% removal, respectively. Power production can be enhanced by increasing the cathode's ability to accept the electrons, reducing the ageing of biofilm and promoting complete oxidation of the substrates. Upon improving its performance, MDC can act as a sustainable technology, collaborating with industries seeking solutions for wastewater treatment, energy generation and agricultural sectors on a large scale. Highlights: MDC integrates wastewater treatment, power generation and desalination.Vigna mungo wash water was reported for the first time as an anolyte in MDC.Graphite plate showcases a better power density, 2720 ± 50 μW/m2.Carbon brush establishes better COD removal and desalination efficiency. [ABSTRACT FROM AUTHOR]

Inflammatory bowel disease (IBD) is one of the most challenging diseases in the 21st century, and more than 10 million people around the world suffer from IBD. Because of the limitations and adverse effects associated with conventional IBD therapies, there has been increased scientific interest in microbial‐derived biomolecules, known as postbiotics. Postbiotics are defined as the preparation of inanimate microorganisms and/or their components that confer a health benefit on the host, comprising inactivated microbial cells, cell fractions, metabolites, etc. Postbiotics have shown potential in enhancing IBD treatment by reducing inflammation, modulating the immune system, stabilizing intestinal flora and maintaining the integrity of intestinal barriers. Consequently, they are considered promising adjunctive therapies for IBD. Recent studies indicate that postbiotics offer distinctive advantages, including spanning clinical (safe origin), technological (easy for storage and transportation) and economic (reduced production costs) dimensions, rendering them suitable for widespread applications in functional food/pharmaceutical. This review offers a comprehensive overview of the definition, classification and applications of postbiotics, with an emphasis on their biological activity in both the prevention and treatment of IBD. © 2024 Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

The crisis of obtaining drinking water and electrical energy from clean sources has been the primary focus of researchers seeking ecologically acceptable and cost‐effective alternatives. The microbial desalination cell (MDC) has shown to be one of the most cost‐effective and promising ways for creating electricity, cleaning sewage water, and naturally desalinating water. In this work, the AEM (Anion Exchange Membrane) was used in the anodic chamber, and potassium ferricyanide in the cathodic chamber as catholyte solution. Meanwhile, SEM (Scanning electron microscopy) analyses was used to define the resulting surface morphologies. This study gave an optimization model by Central Composite Design model, where all the variables affecting the microbial desalination cell (the initial concentration of COD (Chemical Oxygen Demand), the initial concentration of TDS (Total dissolved solids) and the operating time of the cell) were entered to obtain an equation for each response (electrical energy productivity, COD removal efficiency and water desalination efficiency) in addition to study the ANOVA (Analysis of variance) for each response and study the interactions of the variables with each other that affect the response. The variables were determined for the initial concentration of (COD) from (300‐1200 mg/L) and the initial concentration of (TDS) from (15–35 g/L) and the duration of the operating time was from (4–24 h) the maximum productivity was obtained. The power was 2.2 mW, and the maximum water desalination gave 42 %, and the optimum COD removal was 35 %. In addition to diagnosing the active sludge employed and defining the kind of bacteria controlling it, this research looked at the breakdown of the yield of ion exchange membranes, which had a negative impact on the desalination process and the productivity of electrical energy. [ABSTRACT FROM AUTHOR]

Lipopeptides are a class of lipid–peptide‐conjugated compounds with differing structural features. This structural diversity is responsible for their diverse range of biological properties, including antimicrobial, antioxidant, and anti‐inflammatory activities. Lipopeptides have been attracting the attention of food scientists due to their potential as food additives and preservatives. This review provides a comprehensive overview of lipopeptides, their production, structural characteristics, and functional properties. First, the classes, chemical features, structure–activity relationships, and sources of lipopeptides are summarized. Then, the gene expression and biosynthesis of lipopeptides in microbial cell factories and strategies to optimize lipopeptide production are discussed. In addition, the main methods of purification and characterization of lipopeptides have been described. Finally, some biological activities of the lipopeptides, especially those relevant to food systems along with their mechanism of action, are critically examined. [ABSTRACT FROM AUTHOR]

Base editors (BEs) are widely used as revolutionary genome manipulation tools for cell evolution. To screen the targeted individuals, it is often necessary to expand the editing window to ensure highly diverse variant library. However, current BEs suffer from a limited editing window of 5–6 bases, corresponding to only 2–3 amino acids. Here, by engineering the CRISPR‒Cas12b, the study develops dCas12b‐based CRISPRi system, which can efficiently repress gene expression by blocking the initiation and elongation of gene transcription. Further, based on dCas12b, a new‐generation of BEs with an expanded editing window is established, covering the entire protospacer or more. The expanded editing window results from the smaller steric hindrance compared with other Cas proteins. The universality of the new BE is successfully validated in Bacillus subtilis and Escherichia coli. As a proof of concept, a spectinomycin‐resistant E. coli strain (BL21) and a 6.49‐fold increased protein secretion efficiency in E. coli JM109 are successfully obtained by using the new BE. The study, by tremendously expanding the editing window of BEs, increased the capacity of the variant library exponentially, greatly increasing the screening efficiency for microbial cell evolution. [ABSTRACT FROM AUTHOR]

Biosynthesis is the application of enzymes in microbial cell factories and has emerged as a promising alternative to chemical synthesis. However, natural enzymes with limited catalytic performance often need to be engineered to meet specific needs through a time‐consuming trial‐and‐error process. This study presents a quantum mechanics (QM)‐incorporated design–build–test–learn (DBTL) framework to rationally design phosphatase BT4131, an enzyme with an ambiguous substrate spectrum involved in N‐acetylglucosamine (GlcNAc) biosynthesis. First, mutant M1 (L129Q) is designed using force field‐based methods, resulting in a 1.4‐fold increase in substrate preference (kcat/Km) toward GlcNAc‐6‐phosphate (GlcNAc6P). QM calculations indicate that the shift in substrate preference is caused by a 13.59 kcal mol−1 reduction in activation energy. Furthermore, an iterative computer‐aided design is conducted to stabilize the transition state. As a result, mutant M4 (I49Q/L129Q/G172L) with a 9.5‐fold increase in kcat‐GlcNAc6P/Km‐GlcNAc6P and a 59% decrease in kcat‐Glc6P/Km‐Glc6P is highly desirable compared to the wild type in the GlcNAc‐producing chassis. The GlcNAc titer increases to 217.3 g L−1 with a yield of 0.597 g (g glucose)−1 in a 50‐L bioreactor, representing the highest reported level. Collectively, this DBTL framework provides an easy yet fascinating approach to the rational design of enzymes for industrially viable biocatalysts. [ABSTRACT FROM AUTHOR]

Butyl butyrate is a short‐chain fatty acid ester (C8) with a fruity aroma. It has broad prospects in the fields of foods, cosmetics and biofuels. At present, butyl butyrate is produced by chemical synthesis in the industry, but it is highly dependent on petroleum‐based products. The growing concerns regarding the future scarcity of fossil fuels have been strongly promoted the transition from traditional fossil fuels and products to renewable bioenergy and biochemicals. Therefore, it is necessary to develop a green biochemical technology to replace traditional petroleum‐based materials. In recent years, microorganisms such as Escherichia coli and Clostridium have been engineered to serve as cell factories for the sustainable one‐pot production of short‐chain fatty acid esters, including butyl butyrate. This opinion highlights the recent development in the use of lipases and alcohol acyltransferases (AATs) for butyl butyrate production in microbial fermentation, as well as future perspectives. [ABSTRACT FROM AUTHOR]

Non‐peripherally, glycerol terminal groups substituted copper (II) phthalocyanine were non‐covalently (electrostatic and/or π–π interaction) attached to carbon (CQD) and carbon‐boron quantum dots (CBQD) to form QDs‐Pc nanoconjugate systems. Synthesized novel phthalocyanine compounds and QDs‐Pc conjugate systems were characterized using different spectroscopic techniques. Various biological assessments were applied to newly synthesized compounds. Conjugates 4 and 5 had a maximal free radical scavenging activity of 71.3% and 68.1% at a 100 mg/L concentration. Compounds exhibited high antidiabetic activities at 200 mg/L. Also, compounds showed significant DNA nuclease activity at all tested concentrations. The most efficient MIC value was obtained as 4 mg/L against Enterococcus hirae and Enterococcus feacalis. This MIC value was further decreased after photodynamic therapy, and it was observed that the antimicrobial effects of the compounds increased. Inhibition of microbial cell viability was obtained as 100% for all compounds. In addition, compounds exerted perfect biofilm inhibitory effects. [ABSTRACT FROM AUTHOR]

Dendritic cells (DCs) are the most significant antigen presenting cells of the immune system, critical for the activation of naïve T cells. The pathways controlling DC development, maturation, and effector function therefore require precise regulation to allow for an effective induction of adaptive immune response. MYSM1 is a chromatin binding deubiquitinase (DUB) and an activator of gene expression via its catalytic activity for monoubiquitinated histone H2A (H2A‐K119ub), which is a highly abundant repressive epigenetic mark. MYSM1 is an important regulator of haematopoiesis in mouse and human, and a systemic constitutive loss of Mysm1 in mice results in a depletion of many haematopoietic progenitors, including DC precursors, with the downstream loss of most DC lineage cells. However, the roles of MYSM1 at the later checkpoints in DC development, maturation, activation, and effector function at present remain unknown. In the current work, using a range of novel mouse models (Mysm1flCreERT2, Mysm1flCD11c‐cre, Mysm1DN), we further the understanding of MYSM1 functions in the DC lineage: assessing the requirement for MYSM1 in DC development independently of other complex developmental phenotypes, exploring its role at the later checkpoints in DC maintenance and activation in response to microbial stimulation, and testing the requirement for the DUB catalytic activity of MYSM1 in these processes. Surprisingly, we demonstrate that MYSM1 expression and catalytic activity in DCs are dispensable for the maintenance of DC numbers in vivo or for DC activation in response to microbial stimulation. In contrast, MYSM1 acts via its DUB catalytic activity specifically in haematopoietic progenitors to allow normal DC lineage development, and its loss results not only in a severe DC depletion but also in the production of functionally altered DCs, with a dysregulation of many housekeeping transcriptional programs and significantly altered responses to microbial stimulation. [ABSTRACT FROM AUTHOR]

A growing demand for sustainable, alternative protein sources that are nutrientdense, such asmicroorganisms, and insects, has gradually evolved. When paired with effective processing techniques, yeast cells contain substantial substances that could supply the population's needs for food, medicine, and fuel. This review article explores the potential of yeast proteins as a sustainable and viable alternative to animal and plant-based protein sources. It highlights the various yeast protein extraction methods including both mechanical and non-mechanical methods. The application of nanoparticles is one example of the fast-evolving technology used to damage microbial cells. SiO2 or Al2O3 nanoparticles break yeast cell walls and disrupt membranes, releasing intracellular bioactive compounds. Succinylation of yeast protein during extraction can increase yeast protein extraction rate, lower RNA concentration, raise yeast protein solubility, increase amino acid content, and improve yeast protein emulsification and foaming capabilities. Combining physical and enzymatic extraction methods generates the most representative pool of mannose proteins from yeast cell walls. Ethanol or isoelectric precipitation purifies mannose proteins. Mannoproteins can be used as foamy replacement for animal-derived components like egg whites due to their emulsification, stability, and foaming capabilities. Yeast bioactive peptide was separated by ultrafiltration after enzymatic hydrolysis of yeast protein and has shown hypoglycemic, hypotensive, and oxidative action in vitro studies. Additionally, the review delves into the physicochemical properties and stability of yeast-derived peptides aswell as their applications in the food industry. The article infers that yeast proteins are among the promising sources of sustainable protein, with a wide range of potential applications in the food industry. [ABSTRACT FROM AUTHOR]

At present, atmospheric and room‐temperature plasma (ARTP) is regarded as a new and powerful mutagenesis technology with the advantages of environment‐friendliness, operation under mild conditions, and fast mutagenesis speed. Compared with traditional mutagenesis strategies, ARTP is used mainly to change the structure of microbial DNA, enzymes, and proteins through a series of physical, chemical, and electromagnetic effects with the organisms, leading to nucleotide breakage, conversion or inversion, causing various DNA damages, so as to screen out the microbial mutants with better biological characteristics. As a result, in recent years, ARTP mutagenesis and the combination of ARTP with traditional mutagenesis have been widely used in microbiology, showing great potential for application. In this review, the recent progress of ARTP mutagenesis in different application fields and bottlenecks of this technology are systematically summarized, with a view to providing a theoretical basis and technical support for better application. Finally, the outlook of ARTP mutagenesis is presented, and we identify the challenges in the field of microbial mutagenesis by ARTP. Significance statement: The aim of this review is to analyze the beneficial mutagenic effects induced by ARTP on microbial cells and the related mutagenic mechanisms. Subsequently, bottleneck issues and the recent research progress of ARTP on mutagenesis are systematically summarized, and the application prospect is presented. This review may provide valuable insights and research ideas for future atmospheric and room‐temperature plasma mutagenesis of cells. [ABSTRACT FROM AUTHOR]

Aromatic compounds are used in pharmaceutical, food, textile and other industries. Increased demand has sparked interest in exploring biotechnological approaches for their sustainable production as an alternative to chemical synthesis from petrochemicals or plant extraction. These aromatic products may be toxic to microorganisms, which complicates their production in cell factories. In this study, we analysed the toxicity of multiple aromatic compounds in common production hosts. Next, we screened a subset of toxic aromatics, namely 2‐phenylethanol, 4‐tyrosol, benzyl alcohol, berberine and vanillin, against transporter deletion libraries in Escherichia coli and Saccharomyces cerevisiae. We identified multiple transporter deletions that modulate the tolerance of the cells towards these compounds. Lastly, we engineered transporters responsible for 2‐phenylethanol tolerance in yeast and showed improved 2‐phenylethanol bioconversion from L‐phenylalanine, with deletions of YIA6, PTR2 or MCH4 genes improving titre by 8–12% and specific yield by 38–57%. Our findings provide insights into transporters as targets for improving the production of aromatic compounds in microbial cell factories. [ABSTRACT FROM AUTHOR]

Reprogramming metabolic flux is a promising approach for constructing efficient microbial cell factories (MCFs) to produce chemicals. However, how to boost the transmission efficiency of metabolic flux is still challenging in complex metabolic pathways. In this study, metabolic flux is systematically reprogrammed by regulating flux size, flux direction, and flux rate to build an efficient MCF for chondroitin production. The ammoniation pool for UDP‐GalNAc synthesis and the carbonization pool for UDP‐GlcA synthesis are first enlarged to increase flux size for providing enough precursors for chondroitin biosynthesis. Then, the ammoniation pool and the carbonization pool are rematched using molecular valves to shift flux direction from cell growth to chondroitin biosynthesis. Next, the adaptability of polymerization pool with the ammoniation and carbonization pools is fine‐tuned by dynamic and static valve‐based adapters to accelerate flux rate for polymerizing UDP‐GalNAc and UDP‐GlcA to produce chondroitin. Finally, the engineered strain E. coli F51 is able to produce 9.2 g L−1 chondroitin in a 5‐L bioreactor. This strategy shown here provides a systematical approach for regulating metabolic flux in complex metabolic pathways for efficient biosynthesis of chemicals. [ABSTRACT FROM AUTHOR]

Medium‐chain‐length α,ω‐diols (mcl‐diols) play an important role in polymer production, traditionally depending on energy‐intensive chemical processes. Microbial cell factories offer an alternative, but conventional strains like Escherichia coli and Saccharomyces cerevisiae face challenges in mcl‐diol production due to the toxicity of intermediates such as alcohols and acids. Metabolic engineering and synthetic biology enable the engineering of non‐model strains for such purposes with P. putida emerging as a promising microbial platform. This study reviews the advancement in diol production using P. putida and proposes a four‐module approach for the sustainable production of diols. Despite progress, challenges persist, and this study discusses current obstacles and future opportunities for leveraging P. putida as a microbial cell factory for mcl‐diol production. Furthermore, this study highlights the potential of using P. putida as an efficient chassis for diol synthesis. [ABSTRACT FROM AUTHOR]

In this study, a new di‐substituted phthalonitrile derivative namely 2‐[2‐{(3,5‐bis (trifluoromethyl) phenyl) ethynyl}‐4,5 dicyanophenyl] malonate was synthesized. The cycloteramerization of the resultant compound in the presence of the related metal salts resulted in a number of metal {M=Co, Mn, and Lu} phthalocyanines. The newly synthesized macromolecules were used for the functionalization of gold nanorods. To study the effect of modification and metal ion on the biological properties of the gold nanorods, the biological features of the phthalocyanines, phthalocyanine‐gold nanorod conjugates, and gold nanorods were examined by performing different biological approaches. In this study, the anti‐diabetic activities of fluorinated phthalocyanines and their gold nanorod conjugates were examined for the first time using pancreatic alpha‐amylase. The antioxidant activities of the studied nano/structures were analyzed using 2,2‐diphenyl‐1‐picrylhydrazil (DPPH) radical scavenging assay. Their antimicrobial and antimicrobial photodynamic therapy activities (APDT) were investigated, as well. They exhibited good DNA cleavage activities. The highest biofilm inhibition activities were obtained 97.49 and 91.53 % for 200 mg/L of nanoconjugate (7) against S. aureus and P. aeruginosa, respectively. All the studied biological candidates also displayed effective microbial cell viability inhibition activities against E. coli. [ABSTRACT FROM AUTHOR]

Rapid identification of pathogens is critical for early and appropriate treatment of bloodstream infections. The various culture‐independent assays that have been developed often have long turnaround times, low sensitivity and narrow pathogen coverage. Here, we propose a new multiplex PCR assay, MeltArray, which uses intact microbial cells as the source of genomic DNA (gDNA). The successive steps of the MeltArray assay, including selective lysis of human cells, microbial cell sedimentation, microbial cellular DNA extraction, target‐specific pre‐amplification and multiplex PCR detection, allowed the detection of 35 major bloodstream infectious pathogens in whole blood within 5.5 h. The limits of detection varied depending on the pathogen and ranged from 1 to 5 CFU/mL. Of 443 blood culture samples, including 373 positive blood culture samples and 70 negative blood culture samples, the MeltArray assay showed a sensitivity of 93.8% (350/373, 95% confidence interval [CI] = 90.7%–96.0%), specificity of 98.6% (69/70, 95% CI = 91.2%–99.9%), positive predictive value of 99.7% (95% CI = 98.1%–99.9%), and negative predictive value of 75.0% (95% CI = 64.7%–83.2%). The MeltArray detection results of 16 samples differed from MALDI–TOF and were confirmed by Sanger sequencing. Further testing of 110 whole blood samples from patients with suspected bloodstream infections using blood culture results revealed that the MeltArray assay had a clinical sensitivity of 100% (9/9, 95% CI = 62.8%–100.0%), clinical specificity of 74.5% (70/94, 95% CI = 64.2%–82.7%), positive predictive value of 27.3% (95% CI = 13.9%–45.8%), and negative predictive value of 100.0% (95% CI = 93.5%–100.0%). Compared with metagenomic next‐generation sequencing, the MeltArray assay displayed a positive agreement of 85.7% (6/7, 95% CI = 42.0%–99.2%) and negative agreement of 100.0% (4/4, 95% CI = 39.6%–100.0%). We conclude that the MeltArray assay can be used as a rapid and reliable tool for direct identification of pathogens in bloodstream infections. [ABSTRACT FROM AUTHOR]

BACKGROUND: Microbial desalination cell (MDC) is a new technology in the use of electrical energy for water desalination and wastewater treatment. RESULTS: Open circuit (OC) and closed circuit (CC) modes were successfully simulated with initial TDS concentrations of 10 g/L and 10–15 g/L, respectively (an external resistance of only 150 Ω was applied for CC). After 160 h of operation, the maximum OC voltage, desalination efficiency and COD removal efficiency were 809 mV, 32.2% and 79.2%, respectively. The maximum voltage was also obtained when the external resistances were 150 Ω (423.4 and 438 mV) for the initial NaCl concentrations (10 and 15 g/L) in the central chamber, respectively. Moreover, the maximal desalting and COD removal efficiencies after 24 h run‐time were (30% and 28%) and (24% and 25%) for initial NaCl concentrations (10 or 15 g/L) in the central chamber, respectively. Maintaining pH (8.61, 7.01) to (7.85, 7.8) in anode and cathode chambers was studied. This research accurately depicted microbial desalination's efficiency in generating OC voltages and CC electrical energy via Box–Behnken Design Distribution (BBD). Investigated factors' interactions (initial salt/COD concentrations, time) on CC system's energy efficiency. Resulted in peak productivity at (1.85 mW), OC reaching (1100 mV). CONCLUSION: Finally, the research paper gave exciting results in improving the efficiency of the microbial desalination cell to increase the ability to produce electrical energy and desalinate water. © 2023 Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

Industrial chemical production largely relies on fossil fuels, resulting in the unavoidable release of carbon dioxide (CO2) into the atmosphere. The concept of a circular carbon bioeconomy has been proposed to address this issue, wherein CO2 is captured and used as a raw material for manufacturing new chemicals. Microbial cell factories and, in particular, autotrophic microorganisms capable of utilizing CO2 as the sole carbon source, emerged as potential catalysts for upcycling CO2 to valuable products. The Calvin‐Benson‐Bassham cycle (CBBc), the best‐known CO2 fixation pathway, is widely distributed in Nature. While extensively studied, microbial engineering programmes based on the CBBc remains relatively underexplored. In this review, we discuss avenues towards biotechnological exploitation of the CBBc to engineer CO2‐utilizing microbial cell factories, with a focus on chemically‐derived electron donors. We also highlight the advantages and challenges of implementing the CBBc in heterotrophic microbial hosts and its potential to advance a true circular carbon bioeconomy. Moreover, based on the pathway's architecture, we argue about the ideal value‐added products to generate from this metabolic route. Altogether, studying and engineering the CBBc in both natural‐ and synthetic‐autotrophs will enhance our understanding on this CO2 fixation pathway, enabling further exploration of biomanufacturing avenues with CO2 as feedstock. [ABSTRACT FROM AUTHOR]

This work proves the feasibility of dechlorinating 2,4‐D, a customary commercial herbicide, using cathodic electrocatalysis driven by the anodic microbial electrooxidation of sodium acetate. A set of microbial electrochemical systems (MES) were run under two different operating modes, namely microbial fuel cell (MFC) mode, with an external resistance of 120 Ω, or microbial electrolysis cell (MEC) mode, by supplying external voltage (0.6 V) for promoting the (bio)electrochemical reactions taking place. When operating the MES as an MFC, 32% dechlorination was obtained after 72 h of treatment, which was further enhanced by working under MEC mode and achieving a 79% dechlorination. In addition, the biodegradability (expressed as the ratio BOD/COD) of the synthetic polluted wastewater was tested prior and after the MES treatment, which was improved from negative values (corresponding to toxic effluents) up to 0.135 in the MFC and 0.453 in the MEC. Our MES approach proves to be a favourable option from the point of view of energy consumption. Running the system under MFC mode allowed to co‐generate energy along the dechlorination process (−0.0120 kWh mol−1), even though low removal rates were attained. The energy input under MEC operation was 1.03 kWh mol−1—a competitive value compared to previous works reported in the literature for (non‐biological) electrochemical reactors for 2,4‐D electrodechlorination. [ABSTRACT FROM AUTHOR]

Proteins in tears, including human lactoferrin (HLF), can be deposited and denatured on contact lenses, increasing the risk of microbial cell attachment to the lens and ocular complications. The surfactants currently used in commercial contact lens care solutions have low clearance ability for tear proteins. Chitosan oligosaccharide (COS) binds to a variety of proteins and has potential for use in protein removal, especially in contact lens care solutions. Here, we analyzed the interaction mechanism of COSs hydrolyzed from chitosan from different resources with HLF. The molecular weights (MWs) and concentrations of COSs were key factors for the formation of COS–HLF complexes. Lower MWs of COSs could form more stable COS–HLF complexes. COS from Aspergillus ochraceus had a superior effect on HLF compared with COS from shrimp and crab shell with the same MWs. In conclusion, COSs could bind to and cause a conformational change in HLF. Therefore, COSs, especially those with low MWs, have potential as deproteinizing agents in contact lens care solution. [ABSTRACT FROM AUTHOR]

Carbon use efficiency (CUE) is being intensively applied to quantify carbon (C) cycling processes from microbial cell to global scales. Energy use efficiency (EUE) is at least as important as the CUE because (i) microorganisms use organic C mainly as an energy source and not as elemental C per se, and (ii) microbial growth and maintenance are limited by energy, but not by C as a structural element. We conceptualize and review the importance of EUE by soil microorganisms and focus on (i) the energy content in organic compounds depending on the nominal oxidation state of carbon (NOSC), (ii) approaches to assess EUE, (iii) similarities and differences between CUE and EUE, and (iv) discuss mechanisms responsible for lower EUE compared to CUE. The energy content per C atom (enthalpy of combustion, the total energy stored in a compound) in organic compounds is very closely (R2 = 0.98) positively related to NOSC and increases by 108 kJ mol−1 C per one NOSC unit. For the first time we assessed the NOSC of microbial biomass in soil (−0.52) and calculated the corresponding energy content of −510 kJ mol−1 C. We linked CUE and EUE considering the NOSC of microbial biomass and element compositions of substrates utilized by microorganisms. The mean microbial EUE (0.32–0.35) is 18% lower than CUE (0.41) using glucose as a substrate. This definitely indicates that microbial growth is limited by energy relative to C. Based on the comparison of a broad range of processes of C and energy utilization for cell growth and maintenance, as well as database of experimental CUE from various compounds, we clearly explained five mechanisms and main factors why EUE is lower than CUE. The two main mechanisms behind lower EUE versus CUE are: (i) microbial recycling: C can be microbially recycled, whereas energy is always utilized only once, and (ii) chemical reduction of organic and inorganic compounds: Energy is used for reduction, which is ongoing without C utilization. [ABSTRACT FROM AUTHOR]

The type VI secretion system (T6SS) is a contractile nanomachine widespread in Gram‐negative bacteria. The T6SS injects effectors into target cells including eukaryotic hosts and competitor microbial cells and thus participates in pathogenesis and intermicrobial competition. Pseudomonas fluorescens MFE01 possesses a single T6SS gene cluster that confers biocontrol properties by protecting potato tubers against the phytopathogen Pectobacterium atrosepticum (Pca). Here, we demonstrate that a functional T6SS is essential to protect potato tuber by reducing the pectobacteria population. Fluorescence microscopy experiments showed that MFE01 displays an aggressive behaviour with an offensive T6SS characterized by continuous and intense T6SS firing activity. Interestingly, we observed that T6SS firing is correlated with rounding of Pectobacterium cells, suggesting delivery of a potent cell wall targeting effector. Mutagenesis coupled with functional assays then revealed that a putative T6SS secreted amidase, Tae3Pf, is mainly responsible for MFE01 toxicity towards Pca. Further studies finally demonstrated that Tae3Pf is toxic when produced in the periplasm, and that its toxicity is counteracted by the Tai3Pf inner membrane immunity protein. [ABSTRACT FROM AUTHOR]

A microbial electrolysis cell was established to explore the degradation characteristics of characteristic pollutants in wastewater for parabromoaniline (P‐BrA). Their effects on P‐BrA reduction and degradation were investigated through factors such as impressed voltage and cosubstrate type. The P‐BrA residue and degradation in wastewater were analysed quantitatively through analytical testing methods, such as ultraviolet–visible, cyclic voltammetry, high‐performance liquid chromatograph, and scanning electron microscopy. The results showed that under the cathode potential of 0.5 V, electrons and electroactive microorganisms generate coupling action to accelerate the degradation of P‐BrA, reaching 94.94%. Moreover, the addition of carbon source organisms, such as glucose and sodium acetate, can facilitate the degradation of P‐BrA in the cathode chamber on the precondition that the electroactive anaerobic microbial C/N ratio was satisfied, both reaching over 90%. In addition, the microbial community diversity and richness of bioelectrochemistry system were enhanced after bioaugmentation. The increase in the Anacrolincalcs, Betaproteobacteriales, and Micrococcales also played an important role in the granulation of bioelectrochemistry system and the removal of characteristic pollutants. [ABSTRACT FROM AUTHOR]

Super‐resolution optical imaging tools are crucial in microbiology to understand the complex structures and behavior of microorganisms such as bacteria, fungi, and viruses. However, the capabilities of these tools, particularly when it comes to imaging pathogens and infected tissues, remain limited. MicroMagnify (µMagnify) is developed, a nanoscale multiplexed imaging method for pathogens and infected tissues that are derived from an expansion microscopy technique with a universal biomolecular anchor. The combination of heat denaturation and enzyme cocktails essential is found for robust cell wall digestion and expansion of microbial cells and infected tissues without distortion. µMagnify efficiently retains biomolecules suitable for high‐plex fluorescence imaging with nanoscale precision. It demonstrates up to eightfold expansion with µMagnify on a broad range of pathogen‐containing specimens, including bacterial and fungal biofilms, infected culture cells, fungus‐infected mouse tone, and formalin‐fixed paraffin‐embedded human cornea infected by various pathogens. Additionally, an associated virtual reality tool is developed to facilitate the visualization and navigation of complex 3D images generated by this method in an immersive environment allowing collaborative exploration among researchers worldwide. µMagnify is a valuable imaging platform for studying how microbes interact with their host systems and enables the development of new diagnosis strategies against infectious diseases. [ABSTRACT FROM AUTHOR]

In view of increasing threats arising from the shortage of fresh water, there is an urgent need to propose sustainable technologies for the exploitation of unconventional water sources. As a derivative of microbial fuel cells (MFCs), microbial desalination cell (MDC) has the potential of desalinating saline/brackish water while simultaneously generating electricity, as well as treating wastewater. Therefore, it is worth investigating its practicability as a potential sustainable desalination technology. This review article first introduces the fundamentals and annual trends of MDCs. The desalination of diverse types of solutions using MDCs along with their life cycle impact assessment (LCIA) and economic analysis is studied later. Finally, limitations and areas for improvement, prospects, and potential applications of this technology are discussed. Due to the great advantages of MDCs, improving their design, building materials, efficiency, and throughput will offer them as a significant alternative to the current desalination technologies. [ABSTRACT FROM AUTHOR]

BACKGROUND: The increase in energy and water demand due to industrialization and urbanization requires prioritized solutions for a sustainable future. Microbial electrolysis cells (MECs) have shown huge potential for biohydrogen production along with wastewater treatment. This study examined the effectiveness of employing nickel foam as an anode material for biohydrogen production from the widely available potato industry effluent. RESULTS: Hydrogen production rate increases exponentially with the increase in applied voltage. A maximum hydrogen production rate of 0.69 ± 0.02 m3 H2 m−3 reactor volume d−1 was achieved at 0.9 V with a maximum chemical oxygen demand removal efficiency of 97% at 0.8 V. The effluent of the 0.8 V cycle had the least salinity, low total dissolved solids, 84% reduced total hardness, highest effluent clarity (4.30 NTU, and negligible quantity of heavy metals. CONCLUSION: This study successfully produced biohydrogen from potato wastewater within 5 days of operation along with wastewater treatment of the substrate. The improved performance of the system can be attributed to the unique characteristics of nickel foam, such as high porosity, large surface area and excellent conductivity. The findings of this study have implications for the sustainable treatment of domestic and agro‐industrial wastewater and the development of efficient and low‐cost bio‐electrochemical systems for renewable energy production. © 2023 Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

A living microbial cell represents a system of high complexity, integration, and extreme order. All processes within that cell interconvert free energy through a multitude of interconnected metabolic reactions that help to maintain the cell in a state of low entropy, which is a characteristic of all living systems. The study of macromolecular interactions outside this cellular environment yields valuable information about the molecular function of macromolecules but represents a system in comparative disorder. Consequently, care must always be taken in interpreting the information gleaned from such studies and must be compared with how the same macromolecules function in vivo, otherwise, discrepancies can arise. The importance of combining reductionist approaches with the study of whole‐cell microbial physiology is discussed regarding the long‐term aim of understanding how a cell functions in its entirety. This can only be achieved by the continued development of high‐resolution structural and multi‐omic technologies. It is only by studying the whole cell that we can ever hope to understand how living systems function. [ABSTRACT FROM AUTHOR]

Bioelectrochemical systems hold the promise of enabling sustainable microbial‐mediated energy interconversion between electrical and chemical energy. Herein, it is demonstrated how a single conjugated polymer can be used to enhance bidirectional extracellular electron transfer through forming self‐assembled coatings on individual cells. Specifically, the n‐type conjugated polyelectrolyte p(cNDI‐gT2) exhibits a reduction potential window between −0.1 and −0.8 V (vs Ag/AgCl), thereby driving thermodynamically favored electron transfer in both directions across the abiotic‐biotic interface that involves the outer membrane cytochromes and flavins of Shewanella oneidensis MR‐1. Electrochemical tests show that injection from an external electrode into Shewanella oneidensis MR‐1 is enabled at negative potentials (−0.6 V), while electron extraction is possible at positive potentials (0.2 V). Relative to controls, the biohybrid shows a sixfold increase in biocurrent generation and a 35‐fold increase in current uptake for the bioelectrosynthesis of succinate from fumarate. This demonstrated abiotic‐biotic synergy provides new strategies for designing multifunctional biohybrids. [ABSTRACT FROM AUTHOR]

The removal of nitrobenzene (NB) in microbial electrochemical systems generally requires electrical power to operate systems in the mode of microbial electrolysis cells (MECs). The present study demonstrates that single‐chamber microbial fuel cells (S‐MFCs) assembled with a bioanode and an activated carbon (AC) air cathode could simultaneously remove NB and generate electricity. S‐MFCs with 1 mM NB exhibit long term NB tolerance and stable electricity production, with NB removal up to 98% in an operation cycle and a maximum power of 16.2 ± 1.3 W m−3. High NB loadings significantly inhibited the activity of anodic biofilms, but the inhibition was reversible. Investigating the removal of NB and its reduction product aniline (AN) in different operations supported the fact that the adsorption at the AC air cathode is the main pathway for the removal of NB and AN from solution, except for the partial conversion of NB to AN by anaerobic reduction in solution. In S‐MFCs, the activated carbon in the cathode plays both functions: catalyzing the oxygen reduction reaction and adsorbing NB and AN, so that the S‐MFC assembled with the AC air cathode, unlike most NB removing MECs, functions as a system with both NB removal and electricity production. [ABSTRACT FROM AUTHOR]

BACKGROUND: A microbial electrolysis cell (MEC) is a bio‐hydrogen production device that uses electrochemically active bacteria on the anode combined with applied voltage to break down organic matter. However, the effects of element content on cathode reduction and cathode catalysts on bioanode activity remain unknown. RESULTS: MEC cathodes with different content of Na2MoO4·2H2O (i.e. 0 g L−1 (Ni), 12.5 g L−1 (Ni–Mo 1), 25 g L−1 (Ni–Mo 2) and 37.5 g L−1 (Ni–Mo 3)) were fabricated by normal pulse voltammetry to evaluate the cathode performance. Nanoparticles of Ni electrode are crystalline NiO on the carbon fiber surface. Compared with the Ni electrode, the catalysts of Ni–Mo electrodes are composed of smaller crystalline NiO and amorphous Mo oxides. The results of electrochemical analysis confirmed that Ni–Mo 1 exhibited low exchange transfer resistance (148.72 Ω), high electrochemically active surface area and strong conductivity, resulting in optimal electrocatalysis performance. The newly fabricated electrodes are applied as cathodes in single‐chamber MEC reactors and inoculated with activated sludge from a municipal wastewater treatment plant. High peak current density determined using cyclic voltammetry of the bioanode indicated the strong electrochemical activity of electroactive bacteria in the bioanode of Ni–Mo 1. This is because the low resistance in the MECs could accelerate electron transfer and boost electrochemical reaction. CONCLUSIONS: The performance of cathodes with different Ni and Mo content in terms of electrochemical activity was evaluated. Consequently, the optimal cathode electrode in MECs was Ni–Mo 1. The obtained results reveal that the cathode affects the bioanode activity in MECs. © 2023 Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

Unlike plant and microbial cells having cell walls, the outermost layer of mammalian cell is a delicate, two‐layered structure of phospholipids with proteins embedded, which is susceptible to environmental changes. It is necessary to create an "armor" on cell surface to protect cell integrity. Here, we propose an Auto‐assembled Resilient bioMimetic calcified ORnaments (ARMOR) strategy driven by dual‐aptamer‐based hybridization chain reaction (HCR) and Ca2+ assisted calcification for selective cell protection. This co‐recognition design enhances the selectivity and leverages robust in situ signal amplification by HCR to improve the sensitivity. The calcified shell is cogenerated by crosslinking the alginate‐HCR product with Ca2+ ion. ARMOR has high efficiency for shielding cells from environmental assaults, which can be applied to circulating tumor cell (CTC) protection, isolation, and identification, maintaining the native state and intact genetic information for downstream analysis. [ABSTRACT FROM AUTHOR]

The control over bacterial diseases requires the development of novel antibacterial agents. The use of antibacterial nanomedicines is one of the strategies to tackle antibiotic resistance. The study was designed to assess the antimicrobial activity of cerium oxide (CeO2) nanoparticles (NP) of two different sizes (CeO2 NP1 [1–2 nm] and CeO2 NP2 [10–12 nm]) and their cytotoxicity towards eukaryotic cells. The antimicrobial activity, effects of nanoparticles on DNA cleavage, microbial cell viability, and biofilm formation inhibition were analyzed. The impact of cerium oxide nanoparticles on eryptosis of erythrocytes was estimated using annexin V staining by flow cytometry. The newly synthesized CeO2 NP1 and CeO2 NP2 displayed moderate antimicrobial activities. CeO2 NP1 and CeO2 NP2 exhibited single‐strand DNA cleavage ability. CeO2 NPs were found to show 100% microbial cell viability inhibition at a concentration of 500 mg/L. In addition, CeO2 NP1 and CeO2 NP2 inhibited the biofilm formation of S. aureus and P. aeruginosa. Larger cerium oxide nanoparticles were found to be less toxic against erythrocytes compared with the smaller ones. CeO2 nanoparticles demonstrate moderate antimicrobial activity and low cytotoxicity towards erythrocytes, which make them promising antibacterial agents. [ABSTRACT FROM AUTHOR]

Microbial cell factories provide a green and sustainable opportunity to produce value‐added products from renewable feedstock. However, the leakage of toxic or volatile intermediates decreases the efficiency of microbial cell factories. In this study, membraneless organelles (MLOs) were reconstructed in Saccharomyces cerevisiae by the disordered protein sequence A‐IDPs. A regulation system was designed to spatiotemporally regulate the size and rigidity of MLOs. Manipulating the MLO size of strain ZP03‐FM, the amounts of assimilated methanol and malate were increased by 162 % and 61 %, respectively. Furthermore, manipulating the MLO rigidity in strain ZP04‐RB made acetyl‐coA synthesis from oxidative glycolysis change to non‐oxidative glycolysis; consequently, CO2 release decreased by 35 % and the n‐butanol yield increased by 20 %. This artificial MLO provides a strategy for the co‐localization of enzymes to channel C1 starting materials into value‐added chemicals. [ABSTRACT FROM AUTHOR]

Glycolytic flux is a fundamental index in microbial cell factories. A glycolytic flux biosensor that can monitor glucose metabolism efficiency is a promising strategy in rewiring metabolic flux to balance growth and biosynthesis. A key design feature of the glycolytic flux biosensors is the interaction between the global transcriptional factor Cra and its regulated promoters. However, overexpression and mutation of Cra has unpredictable effects on global metabolism in Escherichia coli. Therefore, new orthogonal biosensor design strategies should be developed to circumvent metabolic issues. In this report, the promoters in glycolytic flux biosensor were replaced with synthetic promoters of varying strengths or phage‐derived promoters, and the Cra DNA‐binding sites were deployed into promoters at different positions and distances to yield biosensors. The de nova biosensors that depended on Cra could sense Fructose‐1,6‐diphosphate (FBP) with broad dynamic ranges and low basal leakage. Then the negative‐response biosensors were applied to fine‐tune the target ATP synthesis gene, leading to the desired increase in pyruvate production (the highest 9.66 g/L) and cell growth. Moreover, the membrane synthesis gene plsC was also dynamically activated by the positive‐response biosensor, leading to effective accumulation of lycopene in the cell membrane and a 50‐fold increase in lycopene titre (100.3 mg/L) when compared with the control strain, demonstrating the effective and broader usages of our biosensors. [ABSTRACT FROM AUTHOR]

Metabolites, or the small organic molecules that are synthesized by cells during metabolism, comprise a complex and dynamic pool of carbon in the ocean. They are an essential currency in interactions at the population and community levels of biological organization. Characterizing metabolite distributions inside microbial cells and dissolved in seawater is essential to understanding the controls on their production and fate, as well as their roles in shaping marine microbial food webs. Here, we apply a targeted metabolomics method to quantify particulate and dissolved distributions of a suite of biologically relevant metabolites including vitamins, amino acids, nucleic acids, osmolytes, and intermediates in biosynthetic pathways along a latitudinal transect in the western Atlantic Ocean. We find that, in the upper 200 m of the water column, most particulate or intracellular metabolites positively covary with the most abundant microbial taxa. In contrast, dissolved metabolites exhibited greater variability with differences in distribution between ocean regions. Although fewer particulate metabolites were detected below 200 m, the particulate metabolites identified in the deep ocean may be linked to adaptive physiological strategies of deep‐sea microbes. Based on the identified metabolite distributions, we propose relationships between certain metabolites and microbial populations, and find that dissolved metabolite distributions are not directly related to their particulate abundances. [ABSTRACT FROM AUTHOR]

Lignin is one of the most versatile and complex macromolecules, which can be converted to value‐added products such as p‐coumaric acid and vanillin upon depolymerization. The current work explored oxidative lignin depolymerization in a microbial peroxide‐producing cell containing manganese peroxidase enzymes. A double‐chambered microbial peroxide‐producing cell was constructed containing the immobilized manganese peroxidase on alginate beads in the cathode chamber, while the anodic chamber contained wastewater. This setup was run for 8 days after the addition of lignin in the catholyte. The voltage measured in the circuit was 0.491 V while the current and power densities were 223 µA/cm2 and 110 µW/cm2, respectively on the 8th day of the experiment. The maximum H2O2 concentration observed was 1.5 mM on the 6th day. Depolymerization of lignin was confirmed by the change in the significant peaks at 280 nm of the ultraviolet‐visible spectrum. A change in the signature regions of β‐β linkages and β‐O‐4 linkages in the Fourier‐transform infrared spectrum was also observed. Liquid chromatography–quadrupole time of flight–mass spectrometry analysis revealed the presence of compounds including isoeugenol, acetovanillone, methacrylic acid, phenamacril, diofenolan, and jasmolin identified as the product of lignin depolymerization. [ABSTRACT FROM AUTHOR]

The imperfect interfaces between 2D transition metal dichalcogenides (TMDs) are suitable for boosting the hydrogen evolution reaction (HER) during water electrolysis. Here, the improved catalytic activity at the spatial heterojunction between 1T' RexMo1−xS2 and 2H MoS2 is reported. Atomic‐scale electron microscopy confirms that the heterojunction is constructed by an in‐situ two‐step growth process through chemical vapor deposition. Electrochemical microcell measurements demonstrate that the 1T' RexMo1−xS2–2H MoS2 lateral heterojunction exhibits the best HER catalytic performance among all TMD catalysts with an overpotential of ≈84 mV at 10 mA cm−2 current density and 58 mV dec−1 Tafel slope. Kelvin probe force microscopy shows ≈40 meV as the work function difference between 2H MoS2 and 1T' RexMo1−xS2, facilitating the electron transfer from 2H MoS2 to 1T' RexMo1−xS2 at the heterojunction. First‐principles calculations reveal that Mo‐rich heterojunctions with high structural stability are formed, and the HER performance is improved with the combination of increased density of states near the Fermi level and optimal ΔGH* as low as 0.07 eV. Those synergetic effects with many electrons and active sites with optimal ΔGH* improve HER performance at the heterojunction. These results provide new insights into understanding the role of the heterojunction for HER. [ABSTRACT FROM AUTHOR]

Accumulation of methane in oxic waters of lakes and the ocean has been widely reported. Despite the importance for the greenhouse gas budget, mechanistic controls of such "methane paradox" remain elusive. Here, we use a combination of CH4 concentration and isotopic (δ13CCH4, δDH2O and δ18OH2O) measurements, plankton incubations and microbial community assessments to demonstrate the existence of the methane paradox in oxygenated waters of a meromictic lake (Lake Cadagno, Switzerland). Following mass dynamics using water isotopes, we exclude the possibility that the accumulation of CH4 at the thermocline results solely from lateral transport. Interannual variability in the magnitude of the methane paradox (between 0.5 and 5 μmol L−1) is associated to stratification patterns, changes in zooplankton biomass and planktonic detritus accumulation along density gradients, as well as fluctuating microbial cell numbers. The links between hydrodynamic conditions, aggregation of planktonic detritus and its microbiome, as well as the accumulation of CH4 in the water column are further supported by high‐resolution echo‐sounder measurements revealing backscatter maxima at the top of the thermocline, where detritus is effectively trapped, and by oxic incubations showing that CH4 is produced in zooplankton detritus (0.046 nmol L−1 to 0.095 CH4 mg dry mass L−1 d−1). Our results also show that detritus‐hosted methanogenesis is stimulated through the addition of methylphosphonate, suggesting that zooplankton‐associated microbiomes exploit organic phosphorus compounds to release CH4. Understanding the variability of the methane paradox in relation to changing hydrodynamics and plankton communities will be crucial to predict the future role of lakes in the global methane budget. [ABSTRACT FROM AUTHOR]

This study includes the utilization of sweet lemon peel (SLP) and sugarcane bagasse (SB) in solid‐state fermentation using Kluyveromyces marxianus for bioflavor compounds production adopting response surface methodology. The major flavor compounds, 2‐phenylethanol (2‐PE) and 2‐phenylethyl acetate (2‐PEA) were quantified using gas chromatography–mass spectrometry with and without adding any supplements. Quantification of flavor compounds indicated that without adding any accessory in the substrate, the concentration of 2‐PE using SLP and SB was 0.15 ± 0.003 mg/g and 0.14 ± 0.002 mg/g, respectively. Whereas 2‐PEA concentration using SLP and SB was observed as 0.01 ± 0.008 mg/g and 0.02 ± 0.001 mg/g, respectively. The addition of l‐phenylalanine (l‐phe) in the substrates showed 30%–75% enhancement in the production of 2‐PE and 2‐PEA. The present study indicates that the K. marxianus is a potential microbial cell factory for the production of 2‐PE and 2‐PEA with the addition of synthetic l‐phe having a plethora of applications in food and pharmaceutical industries. [ABSTRACT FROM AUTHOR]

Biocatalysis utilizes enzymes and microbial cells as catalysts for a wide range of applications in biotechnology. Immobilization of biocatalysts on various materials has several advantages, including the capacity for reuse, quick reaction termination, easy biocatalyst recovery and operational stability. The present article focuses on the use of material supports for developing immobilized biocatalysts in applications related to energy, environment and chemical synthesis. The work provides a comprehensive overview of a broad class of materials, including organic, inorganic and composites, that have been shown to be prosperous candidates to support the immobilization of enzymes and microbial cells. It also highlights the properties of nanomaterial support such as large surface area and comfort compartment for immobilization. The availability of different types of materials as catalyst support provides an opportunity to understand and develop efficient biocatalytic systems. The choice of selecting a catalyst support will mostly depend on the interaction of the material with the enzyme or microbial cell. Finally, potential challenges, future approaches in developing immobilized biocatalytic systems for various applications and novel material supports are suggested. © 2022 Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

The chemical industry is transitioning to more sustainable and biobased processes. One key element of this transition is coupling energy fluxes and feedstock utilization for optimizing processes, routes and efficiencies. Here, we show for the first time the coupling of the Kolbe electrolysis at the anode with a subsequent microbial conversion of the cathodically produced co‐product hydrogen. Kolbe electrolysis of valeric acid yields the liquid drop‐in fuel additive n‐octane. Subsequently, the solvent isopropanol is produced by resting Cupriavidus necator cells using gaseous electrolysis products (esp. CO2 and H2). The resting microbial cells show carbon efficiencies of up to 41 % and Coulombic/Faradaic efficiencies of 60 % and 80 % for anodic and cathodic reactions, respectively. The implementation of a paired electrolyser resulted in superior process performances with overall efficiencies of up to 64.4 %. [ABSTRACT FROM AUTHOR]

Fucosyllactoses (FL), including 2′‐fucosyllactose (2′‐FL) and 3‐fucosyllactose (3‐FL), have garnered considerable interest for their value in newborn formula and pharmaceuticals. In this study, an engineered Escherichia coli was developed for high‐titer FL biosynthesis by introducing multi‐level metabolic engineering strategies, including (1) individual construction of the 2′/3‐FL‐producing strains through gene combination optimization of the GDP‐L‐fucose module; (2) screening of rate‐limiting enzymes (α‐1,2‐fucosyltransferase and α‐1,3‐fucosyltransferase); (3) analysis of critical intermediates and inactivation of competing pathways to redirect carbon fluxes to FL biosynthesis; (4) enhancement of the catalytic performance of rate‐limiting enzymes by the RBS screening, fusion peptides and multi‐copy gene cloning. The final strains EC49 and EM47 produced 9.36 g/L for 2′‐FL and 6.28 g/L for 3‐FL in shake flasks with a modified‐M9CA medium. Fed‐batch cultivations of the two strains generated 64.62 g/L of 2′‐FL and 40.68 g/L of 3‐FL in the 3‐L bioreactors, with yields of 0.65 mol 2′‐FL/mol lactose and 0.67 mol 3‐FL/mol lactose, respectively. This research provides a viable platform for other high‐value‐added compounds production in microbial cell factories. [ABSTRACT FROM AUTHOR]

Maternally transmitted microbes are ubiquitous. In insects, maternal microbes can play a role in mediating the insect immune response. Less is known about how ecological factors, such as resource use, interact with maternal microbes to affect immunity.In the context of a recent colonization of a novel host plant by the Melissa blue butterfly Lycaeides melissa, we investigated the interaction between host plant use and vertically transmitted, extracellular egg‐associated microbes in determining the strength of the insect immune response.We reared larvae on two different host plant species: a native host Astragalus canadensis and a novel host Medicago sativa. Egg‐associated microbes were removed through a series of antimicrobial egg washes prior to hatching. Immune response was measured through three assays: standing phenoloxidase (PO), total PO and melanization.We detected strong effects of microbial removal. Egg washing resulted in larvae with an increased immune response as measured by total PO—contrary to reports from other taxa. The effect of washing was especially strong for larvae consuming the native host plant.This result may explain why consumption of the egg casing is not a universal behaviour in insects, due to negative effects on larval immunity. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]