11 results on '"Oldenbourg, Rudolf"'
Search Results
2. Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition.
- Author
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Saffer, Adam M., Baskin, Tobias I., Verma, Amitabh, Stanislas, Thomas, Oldenbourg, Rudolf, and Irish, Vivian F.
- Subjects
PECTINS ,CELLULOSE ,POLYSACCHARIDES ,HANDEDNESS ,HELICAL structure ,CELL morphology - Abstract
SUMMARY: Plant cells and organs grow into a remarkable diversity of shapes, as directed by cell walls composed primarily of polysaccharides such as cellulose and multiple structurally distinct pectins. The properties of the cell wall that allow for precise control of morphogenesis are distinct from those of the individual polysaccharide components. For example, cellulose, the primary determinant of cell morphology, is a chiral macromolecule that can self‐assemble in vitro into larger‐scale structures of consistent chirality, and yet most plant cells do not display consistent chirality in their growth. One interesting exception is the Arabidopsis thaliana rhm1 mutant, which has decreased levels of the pectin rhamnogalacturonan‐I and causes conical petal epidermal cells to grow with a left‐handed helical twist. Here, we show that in rhm1 the cellulose is bundled into large macrofibrils, unlike the evenly distributed microfibrils of the wild type. This cellulose bundling becomes increasingly severe over time, consistent with cellulose being synthesized normally and then self‐associating into macrofibrils. We also show that in the wild type, cellulose is oriented transversely, whereas in rhm1 mutants, the cellulose forms right‐handed helices that can account for the helical morphology of the petal cells. Our results indicate that when the composition of pectin is altered, cellulose can form cellular‐scale chiral structures in vivo, analogous to the helicoids formed in vitro by cellulose nano‐crystals. We propose that an important emergent property of the interplay between rhamnogalacturonan‐I and cellulose is to permit the assembly of nonbundled cellulose structures, providing plants flexibility to orient cellulose and direct morphogenesis. Significance Statement: Some plants exhibit a striking pattern of growth with helically twisted cells and organs, but most plants do not display such chirality, despite the presence in their cell walls of chiral macromolecules. We show that the composition of pectin, a mix of multiple cell wall polysaccharides, determines whether or not cellulose assembles into helical structures that subsequently impart chirality to cells and organs. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. An experimental method to characterize the relationship between aperture image and ray directions in microscope optics.
- Author
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Tran, Mai Thi and Oldenbourg, Rudolf
- Abstract
We propose a direct experimental method to calibrate the relationship between ray directions in object space and their positions in the aperture plane of a light field microscope. The calibration improves the interpretation of light field images, which contain information from both types of image planes, the field plane and the aperture plane of the ray path in the microscope. Our method is based on the diffraction of line gratings of known periodicities and provides accurate results with subpixel resolution. The method can be custom‐tailored to most any optical configuration, including standard light microscopy setups, whenever correct mapping between ray parameters in the object/image plane and the aperture plane is needed. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
4. Phase Transition and Liquid Crystalline Organization of Colloidal Graphene Oxide as a Function of pH.
- Author
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Tkacz, Rachel, Abedin, Md Joynul, Sheath, Phillip, Mehta, Shalin B., Verma, Amitabh, Oldenbourg, Rudolf, and Majumder, Mainak
- Subjects
LIQUID crystals ,PHASE transitions ,COLLOIDAL crystals ,GRAPHENE oxide ,PH effect - Abstract
This paper discusses the influence of pH on colloidal graphene oxide (GO) liquid crystals. The results indicate that there is a crossing point where suspensions at pH > p K
a , the GO sheets have different behavior than suspensions at pH < p Ka . This behavior is evidenced by broadening of the biphasic region in the isotropic to nematic phase transition, by observing different shape and internal configurations of the nematic droplets, and in the magnitude of fractionation between large and small sheets in the nematic and isotropic phases. The behavior of GO liquid crystal droplets under the influence of a static magnetic field is studied, and evidence is found in the magnetically induced distortions for the support of our interpretation of the internal configurations of the nematic droplets. This study also demonstrates that magnetic distortions are reversible on a time scale of minutes to hours. This research is based on the LC-PolScope, a polarized light system, which is found to be a powerful tool for characterization of GO liquid crystals due to its fast and easy image acquisition and analysis. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
5. Vinculin is required for cell polarization, migration, and extracellular matrix remodeling in 3D collagen.
- Author
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Thievessen, Ingo, Fakhri, Nikta, Steinwachs, Julian, Kraus, Viola, McIsaac, R. Scott, Liang Gao, Bi-Chang Chen, Baird, Michelle A., Davidson, Michael W., Betzig, Eric, Oldenbourg, Rudolf, Waterman, Clare M., and Fabry, Ben
- Subjects
VINCULIN ,EXTRACELLULAR matrix ,MICROFILAMENT proteins ,CELL culture ,COLLAGEN ,TISSUE remodeling ,CELL migration - Abstract
Vinculin is filamentous (F)-actin-binding protein enriched in integrin-based adhesions to the extracellular matrix (ECM). Whereas studies in 2-dimensional (2D) tissue culture models have suggested that vinculin negatively regulates cell migration by promoting cytoskeleton-ECM coupling to strengthen and stabilize adhesions, its role in regulating cell migration in more physiologic, 3-dimensional (3D) environments is unclear. To address the role of vinculin in 3D cell migration, we analyzed the morphodynamics, migration, and ECM remodeling of primary murine embryonic fibroblasts (MEFs) with cre/loxP-mediated vinculin gene disruption in 3D collagen I cultures. We found that vinculin promoted 3D cell migration by increasing directional persistence. Vinculin was necessary for persistent cell protrusion, cell elongation, and stable cell orientation in 3D collagen, but was dispensable for lamellipodia formation, suggesting that vinculin-mediated cell adhesion to the ECM is needed to convert actin-based cell protrusion into persistent cell shape change and migration. Consistent with this finding, vinculin was necessary for efficient traction force generation in 3D collagen without affecting myosin II activity and promoted 3D collagen fiber alignment and macroscopical gel contraction. Our results suggest that vinculin promotes directionally persistent cell migration and tension-dependent ECM remodeling in complex 3D environments by increasing cell-ECM adhesion and traction force generation. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
6. Massive Bioaccumulation and Self‐Assembly of Phenazine Compounds in Live Cells.
- Author
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Min, Kyoung Ah, Rajeswaran, Walajapet G., Oldenbourg, Rudolf, Harris, Grant, Keswani, Rahul K., Chiang, Mason, Rzeczycki, Phillip, Talattof, Arjang, Hafeez, Mahwish, Horobin, Richard W., Larsen, Scott D., Stringer, Kathleen A., and Rosania, Gus R.
- Abstract
Clofazimine is an orally administered drug that massively bioaccumulates in macrophages, forming membrane‐bound intracellular structures possessing nanoscale supramolecular features. Here, a library of phenazine compounds derived from clofazimine is synthesized and tested for ability to accumulate and form ordered molecular aggregates inside cells. Regardless of chemical structure or physicochemical properties, bioaccumulation is consistently greater in macrophages than in epithelial cells. Microscopically, some self‐assembled structures exhibit a pronounced, diattenuation anisotropy signal, evident by the differential absorption of linearly polarized light, at the peak absorbance wavelength of the phenazine core. The measured anisotropy is well above the background anisotropy of endogenous cellular components, reflecting the self‐assembly of condensed, insoluble complexes of ordered phenazine molecules. Chemical variations introduced at the R‐imino position of the phenazine core lead to idiosyncratic effects on the compounds' bioaccumulation behavior as well as on the morphology and organization of the resulting intracellular structures. Beyond clofazimine, these results demonstrate how the self‐assembly of membrane permeant, orally bioavailable small molecule building blocks can endow cells with unnatural structural elements possessing chemical, physical, and functional characteristics unlike those of other natural cellular components. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
7. Polarized light microscopy in reproductive and developmental biology.
- Author
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Koike‐Tani, Maki, Tani, Tomomi, Mehta, Shalin B., Verma, Amitabh, and Oldenbourg, Rudolf
- Published
- 2015
- Full Text
- View/download PDF
8. Broadening the spectrum of actin-based protrusive activity mediated by Arp2/3 complex-facilitated polymerization: Motility of cytoplasmic ridges and tubular projections.
- Author
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Henson, John H., Gianakas, Anastasia D., Henson, Lauren H., Lakin, Christina L., Voss, Meagen K., Bewersdorf, Joerg, Oldenbourg, Rudolf, and Morris, Robert L.
- Published
- 2014
- Full Text
- View/download PDF
9. Assembly of the fluorescent acrosomal matrix and its fate in fertilization in the water strider, Aquarius remigis.
- Author
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Miyata, Haruhiko, Noda, Naoki, Fairbairn, Daphne J., Oldenbourg, Rudolf, and Cardullo, Richard A.
- Subjects
WATER striders ,SPERMATOGENESIS in animals ,FERTILIZATION in vitro ,FLUORESCENCE microscopy ,BIODIVERSITY ,ANIMAL morphology ,GASTRULATION - Abstract
Animal sperm show remarkable diversity in both morphology and molecular composition. Here we provide the first report of intense intrinsic fluorescence in an animal sperm. The sperm from a semi-aquatic insect, the water strider, Aquarius remigis, contains an intrinsically fluorescent molecule with properties consistent with those of flavin adenine dinucleotide (FAD), which appears first in the acrosomal vesicle of round spermatids and persists in the acrosome throughout spermiogenesis. Fluorescence recovery after photobleaching reveals that the fluorescent molecule exhibits unrestricted mobility in the acrosomal vesicle of round spermatids but is completely immobile in the acrosome of mature sperm. Fluorescence polarization microscopy shows a net alignment of the fluorescent molecules in the acrosome of the mature sperm but not in the acrosomal vesicle of round spermatids. These results suggest that acrosomal molecules are rearranged in the elongating acrosome and FAD is incorporated into the acrosomal matrix during its formation. Further, we followed the fate of the acrosomal matrix in fertilization utilizing the intrinsic fluorescence. The fluorescent acrosomal matrix was observed inside the fertilized egg and remained structurally intact even after gastrulation started. This observation suggests that FAD is not released from the acrosomal matrix during the fertilization process or early development and supports an idea that FAD is involved in the formation of the acrosomal matrix. The intrinsic fluorescence of the A. remigis acrosome will be a useful marker for following spermatogenesis and fertilization. J. Cell. Physiol. 226: 999-1006, 2011. © 2010 Wiley-Liss, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
10. Structure and dynamics of an Arp2/3 complex-independent component of the lamellipodial actin network.
- Author
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Henson, John H., Cheung, David, Fried, Christopher A., Shuster, Charles B., McClellan, Mary K., Voss, Meagen K., Sheridan, John T., and Oldenbourg, Rudolf
- Abstract
Sea urchin coelomocytes contain an unusually broad lamellipodial region and have served as a useful model experimental system for studying the process of actin-based retrograde/centripetal flow. In the current study the small molecule drug 2,3-butanedione monoxime (BDM) was employed as a means of delocalizing the Arp2/3 complex from the cell edge in an effort to investigate the Arp2/3 complex-independent aspects of retrograde flow. Digitally-enhanced phase contrast, fluorescence and polarization light microscopy, along with rotary shadow transmission electron microscopy methods demonstrated that BDM treatment resulted in the centripetal displacement of the Arp2/3 complex and the associated dendritic lamellipodial (LP) actin network from the cell edge. In its wake there remained an array of elongate actin filaments organized into concave arcs that displayed retrograde flow at approximately one quarter the normal rate. Actin polymerization inhibitor experiments indicated that these arcs were generated by polymerization at the cell edge, while active myosin-based contraction in BDM treated cells was demonstrated by localization with antiphospho-myosin regulatory light chain (MRLC) antibody, the retraction of the cytoskeleton in the presence of BDM, and the response of the BDM arcs to laser-based severing. The results suggest that BDM treatment reveals an Arp2/3 complex-independent actin structure in coelomocytes consisting of elongate filaments integrated into the LP network and that these filaments represent a potential connection between the LP network and the central cytoskeleton. Cell Motil. Cytoskeleton 2009. © 2009 Wiley-Liss, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
11. Bipolar, anastral spindle development in artificially activated sea urchin eggs.
- Author
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Henson, John H., Fried, Christopher A., McClellan, Mary K., Ader, Jason, Davis, Jessica E., Oldenbourg, Rudolf, and Simerly, Calvin R.
- Abstract
The mitotic apparatus of the early sea urchin embryo is the archetype example of a centrosome-dominated, large aster spindle organized by means of the centriole of the fertilizing sperm. In this study, we tested the hypothesis that artificially activated sea urchin eggs possess the capacity to assemble the anastral, bipolar spindles present in many acentrosomal systems. Control fertilized Lytechinus pictus embryos and ammonia-activated eggs were immunolabeled for tubulin, centrosomal material, the spindle pole structuring protein NuMA and the mitotic kinesins MKLP1/Kinesin-6, Eg5/Kinesin-5, and KinI/Kinesin-13. Confocal imaging showed that a subset of ammonia-activated eggs contained bipolar 'mini-spindles' that were anastral; displayed metaphase and anaphase-like stages; labeled for centrosomal material, NuMA, and the three mitotic kinesins; and were observed in living eggs using polarization optics. These results suggest that spindle structural and motor proteins have the ability to organize bipolar, anastral spindles in sea urchin eggs activated in the absence of the paternal centriole. Developmental Dynamics 237:1348-1358, 2008. © 2008 Wiley-Liss, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
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