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1. Theoretical models of life-history evolution predict a continuum of fast to slow life histories, yet most of empirical support for this theory comes from studies that have considered dichotomous environments (i.e. high vs. low food, presence or absence of major predators). Although this approach has been very successful in identifying the signature of local adaptation, it might limit our ability to identify the causes of underlying patterns of phenotypic variation. By studying the variation in life-history traits along continuous gradients, we can gain better insight into the diversity of adaptations exhibited by natural populations. 2. We studied the evolution of life-history traits along a gradient of predation pressure in the Trinidadian guppy ( Poecilia reticulata). Six localities along the Guanapo-Caroni River drainage were selected with respect to their predator community, going from upstream localities where guppies only coexist with a single gape-limited fish predator, to lowland sites where guppies coexist with a complex fish community. Along this gradient, we characterized the field pattern of phenotypic variation in age and size at maturity and reproductive effort. Further, to determine the genetic basis of this variation, we measured these traits in second-generation laboratory-born fish from the same localities sampled in the wild. 3. In nature, we found a fine-scale pattern of phenotypic variation in most life-history traits that paralleled the continuous predation gradient. In the laboratory, we observed that reproductive allocation and brood size progressively decrease while age at maturity and interbrood interval progressively increase with a reduction in the predator community, suggesting a genetic basis to the parallel patterns observed in the field for reproductive allocation and offspring number. 4. However, there were some exceptions to the observed pattern of variation. Females from one low-predation locality matured younger and reproduced more frequently than expected based upon the simple nature of the fish community. We also found significant differences between our field and laboratory results for embryo size, suggesting that this trait is highly plastic. 5. Our results imply that local adaptation in guppies occurs at a finer scale than has previously been shown. Furthermore, while our results are consistent with predator-driven life-history variation, we also find patterns of plasticity that would not be apparent in the traditional dichotomous approach. [ABSTRACT FROM AUTHOR]

Urbanization can result in the fragmentation of once contiguous natural landscapes into a patchy habitat interspersed within a growing urban matrix. Animals living in fragmented landscapes often have reduced movement among habitat patches because of avoidance of intervening human development, which potentially leads to both reduced gene flow and pathogen transmission between patches. Mammalian carnivores with large home ranges, such as bobcats ( Lynx rufus), may be particularly sensitive to habitat fragmentation. We performed genetic analyses on bobcats and their directly transmitted viral pathogen, feline immunodeficiency virus (FIV), to investigate the effects of urbanization on bobcat movement. We predicted that urban development, including major freeways, would limit bobcat movement and result in genetically structured host and pathogen populations. We analysed molecular markers from 106 bobcats and 19 FIV isolates from seropositive animals in urban southern California. Our findings indicate that reduced gene flow between two primary habitat patches has resulted in genetically distinct bobcat subpopulations separated by urban development including a major highway. However, the distribution of genetic diversity among FIV isolates determined through phylogenetic analyses indicates that pathogen genotypes are less spatially structured-exhibiting a more even distribution between habitat fragments. We conclude that the types of movement and contact sufficient for disease transmission occur with enough frequency to preclude structuring among the viral population, but that the bobcat population is structured owing to low levels of effective bobcat migration resulting in gene flow. We illustrate the utility in using multiple molecular markers that differentially detect movement and gene flow between subpopulations when assessing connectivity. [ABSTRACT FROM AUTHOR]

Noninvasive sampling methods provide a means for studying species such as large mammalian carnivores that are difficult to survey using traditional techniques. Focusing on bobcat (Lynx rufus), we compared the effectiveness of noninvasive hair and scat genetic sampling in terms of field sample collection, species identification, and individual identification. We describe a novel hair-snare design and sampling protocol that successfully sampled 4 sympatric carnivore species, bobcat, mountain lion (Felis concolor), coyote (Canis latrans), and gray fox (Urocyon cinereoargenteus), in 3 habitat blocks in coastal southern California, USA. Scat surveys were also successful at sampling bobcats and other carnivores in the area. Hair and scat sampling methods had similar species identification success (81% and 87%, respectively) using mitochondrial DNA amplification and restriction enzyme digestion patterns. Therefore, for studies focused on the distribution and activity of a suite of carnivore species, we recommend a combination of noninvasive methodologies, for example, targeting hair and scat surveys toward species and sites where they are most effective. Because of a higher success rate for scat (85%) than for hair samples (10%) when using 4 microsatellite loci and a multiple-tubes approach to verify individual genotypes, we suggest scat sampling is a better choice for studies that require individual identification of bobcats. [ABSTRACT FROM AUTHOR]