Search

Steric manipulation is a known concept in molecular recognition but there is currently no linear free energy relationship correlating sterics to the stability of receptor-anion complexes nor to the reactivity of the bound anion. By analogy to Tolman cone angles in cation coordination chemistry, we explore how to define and correlate cone angles of organo-trifluoroborates (R-BF 3 - ) to the affinities observed for cyanostar-anion binding. We extend the analogy to a rare investigation of the anion's reactivity and how it changes upon binding. The substituent on the anion is used to define the cone angle, θ. A series of 10 anions were studied including versions with ethynyl, ethylene, and ethyl substituents to tune steric bulk across the sp, sp 2 and sp 3 hybridized α-carbons bearing 0, 1 and 2 hydrogen atoms. A linear relationship between affinity and cone angle is observed for anions bearing substituents larger than the -BF 3 - headgroup. This correlation predicted affinities of two new anions to within ±5 %. We explored how complexation affects the reactivity of fluoride exchange. The yield of fluoride transfer from R-BF 3 - to Lewis acid triphenylborane is correlated with cone angle. We predict that other rigid macrocycles, like commercially available bambusuril, could follow these trends., (© 2024 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

Circularly polarized luminescence (CPL) from chiral molecules is attracting much attention due to its potential use in optical materials. However, formulation of CPL emitters as molecular solids typically deteriorates photophysical properties in the aggregated state leading to quenching and unpredictable changes in CPL behavior impeding materials development. To circumvent these shortcomings, a supramolecular approach can be used to isolate cationic dyes in a lattice of cyanostar-anion complexes that suppress aggregation-caused quenching and which we hypothesize can preserve the synthetically-crafted chiroptical properties. Herein, we verify that supramolecular assembly of small-molecule ionic isolation lattices (SMILES) allows translation of molecular ECD and CPL properties to solids. A series of cationic helicenes that display increasing chiroptical response is investigated. Crystal structures of three different packing motifs all show spatial isolation of dyes by the anion complexes. We observe the photophysical and chiroptical properties of all helicenes are seamlessly translated to water soluble nanoparticles by the SMILES method. Also, a DMQA helicene is used as FRET acceptor in SMILES nanoparticles of intensely absorbing rhodamine antennae to generate an 18-fold boost in CPL brightness. These features offer promise for reliably accessing bright materials with programmable CPL properties., (© 2024 The Author(s). Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

The Fiber Pathogenicity Paradigm (FPP) establishes connections between fiber structure, durability, and disease-causing potential observed in materials like asbestos and synthetic fibers. While emerging nanofibers are anticipated to exhibit pathogenic traits according to the FPP, their nanoscale diameter limits rigidity, leading to tangling and loss of fiber characteristics. The absence of validated rigidity measurement methods complicates nanofiber toxicity assessment. By comprehensively analyzing 89 transcriptomics and 37 proteomics studies, this study aims to enhance carbon material toxicity understanding and proposes an alternative strategy to assess morphology-driven toxicity. Carbon materials are categorized as non-fibrous, high aspect ratio with shorter lengths, tangled, and rigid fibers. Mitsui-7 serves as a benchmark for pathogenic fibers. The meta-analysis reveals distinct cellular changes for each category, effectively distinguishing rigid fibers from other carbon materials. Subsequently, a robust random forest model is developed to predict morphology, unveiling the pathogenicity of previously deemed non-pathogenic NM-400 due to its secondary structures. This study fills a crucial gap in nanosafety by linking toxicological effects to material morphology, in particular regarding fibers. It demonstrates the significant impact of morphology on toxicological behavior and the necessity of integrating morphological considerations into regulatory frameworks., (© 2023 The Authors. Advanced Science published by Wiley-VCH GmbH.)

The prevalence of anion-cation contacts in biomolecular recognition under aqueous conditions suggests that ionic interactions should dominate the binding of anions in solvents across both high and low polarities. Investigations of this idea using titrations in low polarity solvents are impaired by interferences from ion pairing that prevent a clear picture of binding. To address this limitation and test the impact of ion-ion interactions across multiple solvents, we quantified chloride binding to a cationic receptor after accounting for ion pairing. In these studies, we created a chelate receptor using aryl-triazole CH donors and a quinolinium unit that directs its cationic methyl inside the binding pocket. In low-polarity dichloromethane, the 1 : 1 complex (log K 1 : 1 ~ 7.3) is more stable than neutral chelates, but fortuitously comparable to a preorganized macrocycle (log K 1 : 1 ~ 6.9). Polar acetonitrile and DMSO diminish stabilities of the charged receptor (log K 1 : 1 ~ 3.7 and 1.9) but surprisingly 100-fold more than the macrocycle. While both receptors lose stability by dielectric screening of electrostatic stability, the cationic receptor also pays additional costs of organization. Thus even though the charged receptor has stronger binding in apolar solvents, the uncharged receptor has more anion affinity in polar solvents., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)

The recognition of boron compounds is well developed as boronic acids but untapped as organotrifluoroborate anions (R-BF 3 - ). We are exploring the development of these and other designer anions as anion-recognition motifs by considering them as substituted versions of the parent inorganic ion. To this end, we demonstrate strong and reliable binding of organic trifluoroborates, R-BF 3 - , by cyanostar macrocycles that are size-complementary to the inorganic BF 4 - progenitors. We find that recognition is modulated by the substituent's sterics and that the affinities are retained using the common K + salts of R-BF 3 - anions., (© 2022 Wiley-VCH GmbH.)

The reaction chemistry of the bis-tetrazinyl pyridine ligand (btzp) towards nitrogen oxyanions coordinated to zinc is studied in order to explore the reduction of the NO x - substrates with a redox-active ligand in the absence of redox activity at the metal. Following syntheses and characterization of (btzp)ZnX 2 for X=Cl, NO 3 and NO 2 , featuring O-Zn linkage of both nitrogen oxyanions, it is shown that a silylating agent selectively delivers silyl substituents to tetrazine nitrogens, without reductive deoxygenation of NO x -1 . A new synthesis of the highly hydrogenated H 4 btzp, containing two dihydrotetrazine reductants is described as is the synthesis and characterization of (H 4 btzp)ZnX 2 for X=Cl and NO 3 , both of which show considerable hydrogen bonding potential of the dihydrotetrazine ring NH groups. The (H 4 btzp)ZnCl 2 complex does not bind zinc in the pincer pocket, but instead H 4 btzp becomes a bridge between neighboring atoms through tetrazine nitrogen atoms, forming a polymeric chain. The reaction of AgNO 2 with (H 4 btzp)ZnCl 2 is shown to proceed with fast nitrite deoxygenation, yielding water and free NO. Half of the H 4 btzp reducing equivalents form Ag 0 and thus the chloride ligand remains coordinated to the zinc metal center to yield (btzp)ZnCl 2 . To compare with AgNO 2 , experiments of (H 4 btzp)ZnCl 2 with NaNO 2 result in salt metathesis between chloride and nitrite, highlighting the importance of a redox-active cation in the reduction of nitrite to NO., (© 2021 Wiley-VCH GmbH.)

Two electron-reduction of the Ti IV guanidinate complex (Im Dipp N)( Xyket guan)TiCl 2 gives (η 6 -Im Dipp N)( xyket guan)Ti (1 intra ) and (Im Dipp N)( Xyket guan)Ti(η 6 -C 6 H 6 ) (1 inter ) ( Xyket guan=[(tBuC=N)C(NXylyl) 2 ] - , Xylyl=2,5-dimethylphenyl) in the absence or presence of benzene, respectively. These complexes have been found to hydrogenate monocyclic and polycyclic arenes under relatively mild conditions (150 psi, 80 °C)-the first example of catalytic, homogeneous arene hydrogenation with TON >1 by a Group IV system., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The single-molecule magnet (SMM) properties of a series of ferrocenium complexes, [Fe(η 5 -C 5 R 5 ) 2 ] + (R=Me, Bn), are reported. In the presence of an applied dc field, the slow dynamics of the magnetization in [Fe(η 5 -C 5 Me 5 ) 2 ]BAr F are revealed. Multireference quantum mechanical calculations show a large energy difference between the ground and first excited states, excluding the commonly invoked, thermally activated (Orbach-like) mechanism of relaxation. In contrast, a detailed analysis of the relaxation time highlights that both direct and Raman processes are responsible for the SMM properties. Similarly, the bulky ferrocenium complexes, [Fe(η 5 -C 5 Bn 5 ) 2 ]BF 4 and [Fe(η 5 -C 5 Bn 5 ) 2 ]PF 6 , also exhibit magnetization slow dynamics, however an additional relaxation process is clearly detected for these analogous systems., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The direct, catalytic substitution of unactivated alcohols remains an undeveloped area of organic synthesis. Moreover, catalytic activation of this difficult electrophile with predictable stereo-outcomes presents an even more formidable challenge. Described herein is a simple iron-based catalyst system which provides the mild, direct conversion of secondary and tertiary alcohols to sulfonamides. Starting from enantioenriched alcohols, the intramolecular variant proceeds with stereoinversion to produce enantioenriched 2- and 2,2-subsituted pyrrolidines and indolines, without prior derivatization of the alcohol or solvolytic conditions., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Hierarchical assembly provides a route to complex architectures when using building blocks with strong and structurally well-defined recognition elements. These rules are traditionally expressed using cationic templates with reliable metal-ligand bonding but use of anions is rare on account of weak anion-host contacts. We investigate an approach that relies on host-host interactions to fortify assemblies formed between bisulfate anion dimers, [HSO4⋅⋅⋅HSO4] 2- , and shape-persistent macrocycles called tricarbazole triazolophanes. These macrocycles have significant self-association. In chloroform, they form high fidelity, triple-decker stacks with bisulfate dimers. The strength of host-host interactions allows for preferential formation of the 3:2 tricarb:bisulfate architecture over an ion-paired architecture seen with analogous macrocycles with much weaker self-association. Solvent was expected and found to tune host-host contacts enabling formation of a 2:2 complex and solvent-driven switching between triple- and double-stacked structures. Crystallography of the 2:2:2 complex supports the idea that significant host-host interactions with tricarb arises from dipole-stabilized π-stacking. Computational studies were also conducted further highlighting the importance of host-host interactions in stacked complexes of tricarb. These findings unambiguously verify the importance of host-host interactions in the assembly and stability of discrete, responsive anion-templated architectures., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Contrary to the simple expectations from Coulomb's law, Weinhold proposed that anions can stabilize each other as metastable dimers, yet experimental evidence for these species and their mutual stabilization is missing. We show that two bisulfate anions can form such dimers, which stabilize each other with self-complementary hydrogen bonds, by encapsulation inside a pair of cyanostar macrocycles. The resulting 2:2 complex of the bisulfate homodimer persists across all states of matter, including in solution. The bisulfate dimer's OH⋅⋅⋅O hydrogen bonding is seen in a 1 H NMR peak at 13.75 ppm, which is consistent with borderline-strong hydrogen bonds., (© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Reaction of 3,6-disubstituted-1,2,4,5-tetrazines with water and PEt 3 forms the corresponding 1,4-dihydrotetrazine and OPEt 3 . Thus PEt 3 , as a stoichiometric reductant, reduces water, and the resulting two reducing equivalents serve to doubly hydrogenate the tetrazine. A variety of possible initial interactions between electron-deficient tetrazine and electron-rich PR 3 , including a charge transfer complex, were evaluated by density functional calculations which revealed that the energy of all these make them spectroscopically undetectable at equilibrium, but one of these is nevertheless suggested as the intermediate in the observed redox reaction. The relationship of this to the Mitsunobu reaction, which absorbs the components of water evolved in the conversion of alcohol and carboxylic acid to ester, with desirable inversion at the alcohol carbon, is discussed. This enables a modified Mitsunobu reaction, with tetrazine replacing EtO 2 CN=NCO 2 Et (DEAD), which has the advantage that dihydrotetrazine can be recycled to tetrazine by oxidation with O 2 , something impossible with the hydrogenated DEAD. For this tetrazine version, a betaine-like intermediate is undetectable, but its protonated form is characterized, including by X-ray structure and NMR spectroscopy., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Thermolysis of the iron(IV) nitride complex [PhB(tBuIm)3Fe≡N] with styrene leads to formation of the high-spin iron(II) aziridino complex [PhB(tBuIm)3Fe-N(CH2CHPh)]. Similar aziridination occurs with both electron-rich and electron-poor styrenes, while bulky styrenes hinder the reaction. The aziridino complex [PhB(tBuIm)3Fe-N(CH2CHPh)] acts as a nitride synthon, reacting with electron-poor styrenes to generate their corresponding aziridino complexes, that is, aziridine cross-metathesis. Reaction of [PhB(tBuIm)3Fe-N(CH2CHPh)] with Me3SiCl releases the N-functionalized aziridine Me3SiN(CH2CHPh) while simultaneously generating [PhB(tBuIm)3FeCl]. This closes a synthetic cycle for styrene azirdination by a nitride complex. While the less hindered iron(IV) nitride complex [PhB(MesIm)3Fe≡N] reacts with styrenes below room temperature, only bulky styrenes lead to tractable aziridino products., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The dimethyl aryloxide complexes [(PNP)M(CH3)2(OAr)] (M=Zr or Hf; PNP(-)=N[2-P(CHMe2)2-4-methylphenyl]2); Ar=2,6-iPr2C6H3), which were readily prepared from [(PNP)M(CH3)3] by alcoholysis with HOAr, undergo photolytically induced α-hydrogen abstraction to cleanly produce complexes [(PNP)M=CH2(OAr)] with terminal methylidene ligands. These unique systems have been fully characterized, including the determination of a solid-state structure in the case of M=Zr., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The recent introduction of the La(3+) precipitation method for the enrichment of phosphoproteins allows a gel-based analysis of these posttranslationally modified proteins. However, if this method is applied to cell lysates stored in urea-containing lysis buffer for an extended period of time, incomplete phosphoprotein recovery is observed. We ascribe this effect to the presence of urea in the lysis buffer. To overcome this problem various strategies were tested, where cell lysates stored at least for one year were utilized. By applying an optimized protocol approximately 250 proteins could be observed following separation by 2DE., (© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Benzo[a]pyrene (BaP), a five-ring polycyclic aromatic hydrocarbon, is a well-recognized environmental pollutant. Coal-processing waste products, petroleum sludge, asphalt, creosote, and tobacco smoke, all contain high levels of BaP. Exposure to BaP elicits many adverse biological effects, including tumor formation, immunosuppression, teratogenicity, and hormonal effects. In addition to the genetic damage caused by BaP exposure, several studies have indicated the disruption of protein-protein signaling pathways. However, contrary to the large number of studies on BaP-induced DNA damage, only few data have been gathered on its effects at the protein level. This review highlights all proteomic studies to date used for assessing the toxicity of BaP and its metabolites in various organ systems. It will also give an overview on the role proteomics may play to elucidate the mechanisms underlying BaP toxicity., (© 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The synthesis of a new series of free-base, Ni(II) and Zn(II) 2,3,12,13-tetra(ethynyl)-5,10,15,20-tetraphenyl porphyrins is described. Upon heating, two of the four ethynyl moieties undergo Bergman cyclization to afford the monocyclized 2,3-diethynyl-5,20-diphenylpiceno[10,11,12,13,14,15-jklmn]porphyrin in 30 %, 10 %, and trace yields, respectively. The structures of all products were investigated by using quantum chemical calculations and the free-base analogue was isolated and crystallized; all compounds show significant deviation from the idealized planar structure. No fully-cyclized bispiceno[20,1,2,3,4,5,10,11,12,13,14,15-fghij]porphyrin was isolated from the reaction mixture. To understand why only two of the four enthynyl groups undergo Bergman cyclization, the reaction coordinates were examined by using DFT at the PWPW91/cc-pVTZ(-f) level coupled to a continuum solvation model. The barrier to cyclization of the second pair of ethynyl groups was found to be 5.5 kcal  mol(-1) higher than the first, suggesting a negative cooperative effect and significantly slower rate for the second cyclization. Cyclization reactions for model porphyrin-enediynes with ethene- and H-functionality substitutions at the meso-phenyl rings were also examined, and found to have a similar barrier to diradical formation for the second cyclization event as for the first in these highly planar molecules. By enforcing an artificial 30° cant in two of the pyrrole rings of the porphyrin, the second barrier was increased by 2 kcal  mol(-1) in the ethene model system; this suggests that the disruption of the π conjugation of the extended porphyrin structure is the cause of the increased barrier to the second cyclization event., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Epithelial tissue lining the inner side of the urinary bladder is the most common target for bladder cancer-related diseases. Bladders of freshly slaughtered pigs were utilised for a comprehensive analysis of the proteome and phosphoproteome of bladder epithelial cells. Following protein separation by 2-D gel electrophoresis and identification by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF-MS) the first proteome and phosphoproteome maps of pig urinary bladder epithelial cells (PUBEC) were established. A total of 120 selected protein spots were identified. By using the La(3+) enrichment method further developed in our laboratory we identified 31 phosphoproteins with minimal contamination by non-phosphopeptides. The 2-DE map of pig urothelial cells may prove as a useful tool for studies on uroepithelial biology, and the analysed phosphoproteins expression pattern, together with the whole cell proteome, will be helpful for identifying the proteins involved in bladder-related diseases., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Spore photoproduct (SP) is the exclusive DNA photodamage product found in bacterial endospores. Its photoformation and repair by a metalloenzyme spore photoproduct lyase (SPL) composes the unique SP biochemistry. Despite the fact that the SP was discovered almost 50 years ago, its crystal structure is still unknown and the lack of structural information greatly hinders the study of SP biochemistry. Employing a formacetal linker and organic synthesis, we successfully prepared a dinucleotide SP isostere 5R-CH(2) SP, which contains a neutral CH(2) moiety between the two thymine residues instead of a phosphate. The neutral linker dramatically facilitates the crystallization process, allowing us to obtain the crystal structure for this intriguing thymine dimer half a century after its discovery. Further ROESY spectroscopic, DFT computational, and enzymatic studies of this 5R-CH(2) SP compound prove that it possesses similar properties with the 5R-SP species, suggesting that the revealed structure truly reflects that of SP generated in Nature., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Site-directed spin labeling and EPR spectroscopy offer accurate, sensitive tools for the characterization of structure and function of macromolecules and their assemblies. A new rigid spin label, spirocyclohexyl nitroxide alpha-amino acid and its N-(9-fluorenylmethoxycarbonyl) derivative, have been synthesized, which exhibit slow enough spin-echo dephasing to permit accurate distance measurements by pulsed EPR spectroscopy at temperatures up to 125 K in 1:1 water/glycerol and at higher temperatures in matrices with higher glass transition temperatures. Distance measurements in the liquid nitrogen temperature range are less expensive than those that require liquid helium, which will greatly facilitate applications of pulsed EPR spectroscopy to the study of structure and conformation of peptides and proteins.

Various CBB-based methods for staining proteins separated by 2-D gel electrophoresis were compared with regard to sensitivity and resolution. A modified Kang's CBB staining protocol, which we have modified, includes phosphoric acid in a concentration of 8% instead of the original 2%. This proved to be the best approach. Protein amounts as low as 2 ng and approximately 2300 spots in the gel can be detected by employing this protocol. The modified procedure takes less time to carry out. Moreover, this practice is more sensitive and resolves more protein spots than most protocols reported to date and is compatible with subsequent mass spectrometric analysis.

The vanadium-bis(telluride) complex, [(PNP)V(Te)(2)] (see picture), in which the terminal telluride units can act as leaving groups or protecting groups, is prepared by activation of elemental Te by V. The complex masks {(PNP)V(I)} or {(PNP)V(III)} sources when exposed to oxidants such as azides and diphenyldiazomethane. Isocyanides promote elimination of one Te ligand to furnish a V(III) complex with a terminal telluride ligand.

[Rh(III)H{(tBu(2)PCH(2)SiMe(2)NSiMe(2)CH(2)PtBu{CMe(2)CH(2)})}], ([RhH(PNP*)]), reacts with O(2) in the time taken to mix the reagents to form a 1:1 eta(2)-O(2) adduct, for which O--O bond length is discussed with reference to the reducing power of [RhH(PNP*)]; DFT calculations faithfully replicate the observed O-O distance, and are used to understand the oxidation state of this coordinated O(2). The reactivity of [Rh(O(2))(PNP)] towards H(2), CO, N(2), and O(2) is tested and compared to the associated DFT reaction energies. Three different reagents effect single oxygen atom transfer to [RhH(PNP*)]. The resulting [RhO(PNP)], characterized at and above -60 degrees C and by DFT calculations, is a ground-state triplet, is nonplanar, and reacts, above about +15 degrees C, with its own tBu C--H bond, to cleanly form a diamagnetic complex, [Rh(OH){N(SiMe(2)CH(2)PtBu(2))(SiMe(2)CH(2)PtBu{CMe(2)CH(2)})}].

Synthesis of thiophene-based [7]helicenes, which are functionalized for both design of organic chiral glasses with strong chiroptical properties and for further homologation to higher [n]helicenes, is reported. The key synthetic transformations are kinetic resolution of the intermediate diketone and the annelation step forming the center benzene ring by means of an intramolecular McMurry reaction. Based upon X-ray crystallographic determinations of the absolute configurations for (+)-enantiomers of the diketone and the [7]helicene, stereochemical correlation between the (R) axial chirality of the diketone and the (M) helical chirality of the [7]helicene is established. One such enantiopure trimethylsilyl-substituted [7]helicene possesses enchanced chiroptical properties and forms a chiral molecular glass.