Search

Orthogonal range search is ubiquitous nowadays, with natural applications in databases, data mining, and text indexing. Very recently, yet another application was discovered, which is to maintain a DFS forest in a dynamic graph. In this paper, we want to extend the above recent study, by applying orthogonal range search to efficient maintenance of a BFS-like forest, called no-back-edge-traversal (NBET) forest, which refers to a spanning forest obtained from a traversal that does not create any back edge. The study of such a problem is motivated by the fact that NBET forest can be used as a strong certificate of 2-connectivity of an undirected graph, which is more general than a spanning forest obtained from a scan-first search traversal. [ABSTRACT FROM AUTHOR]

The subtree transfer (STT) distance is one of the distance metric for comparing phylogenies. Previous work on computing the STT distance considered degree-3 trees only. In this paper, we give an approximation algorithm for the STT distance for degree-d trees with arbitrary d and with generalized STT operations. Also, some NP-hardness results related to STT distance are presented. [ABSTRACT FROM AUTHOR]

The nearest neighbor interchange (nni) distance is a classical metric for measuring the distance (dissimilarity) between evolutionary trees. It has been known that computing the nni distance is NP-complete. Existing approximation algorithms can attain an approximation ratio log n for unweighted trees and 4 log n for weighted trees; yet these algorithms are limited to degree-3 trees. This paper extends the study of nni distance to trees with non-uniform degrees. We formulate the necessary and sufficient conditions for nni transformation and devise more topology-sensitive approximation algorithms to handle trees with non-uniform degrees. The approximation ratios are respectively (2d/log d + 2) log n and (2d/log d + 12) log n for unweighted and weighted trees, where d ≥ 4 is the maximum degree of the input trees. [ABSTRACT FROM AUTHOR]