637 results on '"Alastruey-Izquierdo, A."'
Search Results
2. Artificial intelligence-driven mobile interpretation of a semi-quantitative cryptococcal antigen lateral flow assay
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David Bermejo-Peláez, Ana Alastruey-Izquierdo, Narda Medina, Daniel Capellán-Martín, Oscar Bonilla, Miguel Luengo-Oroz, and Juan Luis Rodríguez-Tudela
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Cryptococcosis ,Lateral flow assay (LFA) ,Artificial intelligence (AI) ,Smartphone ,Semiquantitative assay ,Antigen quantification ,Botany ,QK1-989 - Abstract
Abstract Objectives Cryptococcosis remains a severe global health concern, underscoring the urgent need for rapid and reliable diagnostic solutions. Point-of-care tests (POCTs), such as the cryptococcal antigen semi-quantitative (CrAgSQ) lateral flow assay (LFA), offer promise in addressing this challenge. However, their subjective interpretation poses a limitation. Our objectives encompass the development and validation of a digital platform based on Artificial Intelligence (AI), assessing its semi-quantitative LFA interpretation performance, and exploring its potential to quantify CrAg concentrations directly from LFA images. Methods We tested 53 cryptococcal antigen (CrAg) concentrations spanning from 0 to 5000 ng/ml. A total of 318 CrAgSQ LFAs were inoculated and systematically photographed twice, employing two distinct smartphones, resulting in a dataset of 1272 images. We developed an AI algorithm designed for the automated interpretation of CrAgSQ LFAs. Concurrently, we explored the relationship between quantified test line intensities and CrAg concentrations. Results Our algorithm surpasses visual reading in sensitivity, and shows fewer discrepancies (p
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- 2024
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3. WHO global research priorities for antimicrobial resistance in human health
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Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, Zignol, Matteo, Rudan, Igor, Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, and Weezenbeek, Kitty Van
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- 2024
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4. Impact of climate change and natural disasters on fungal infections
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Seidel, Danila, Wurster, Sebastian, Jenks, Jeffrey D, Sati, Hatim, Gangneux, Jean-Pierre, Egger, Matthias, Alastruey-Izquierdo, Ana, Ford, Nathan P, Chowdhary, Anuradha, Sprute, Rosanne, Cornely, Oliver, Thompson, George R, III, Hoenigl, Martin, and Kontoyiannis, Dimitrios P
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- 2024
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5. Ibrexafungerp, a Novel Triterpenoid Antifungal in Development for the Treatment of Mold Infections
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Angulo, David A, Alexander, Barbara, Rautemaa-Richardson, Riina, Alastruey-Izquierdo, Ana, Hoenigl, Martin, Ibrahim, Ashraf S, Ghannoum, Mahmoud A, King, Thomas R, Azie, Nkechi E, and Walsh, Thomas J
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Emerging Infectious Diseases ,Infectious Diseases ,Rare Diseases ,Prevention ,5.1 Pharmaceuticals ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Development of treatments and therapeutic interventions ,Infection ,new antifungal agents ,ibrexafungerp ,molds ,triterpenoid ,invasive fungal infection - Abstract
Molds are ubiquitous in the environment, and immunocompromised patients are at substantial risk of morbidity and mortality due to their underlying disease and the resistance of pathogenic molds to currently recommended antifungal therapies. This combination of weakened-host defense, with limited antifungal treatment options, and the opportunism of environmental molds renders patients at risk and especially vulnerable to invasive mold infections such as Aspergillus and members of the Order Mucorales. Currently, available antifungal drugs such as azoles and echinocandins, as well as combinations of the same, offer some degree of efficacy in the prevention and treatment of invasive mold infections, but their use is often limited by drug resistance mechanisms, toxicity, drug-drug interactions, and the relative paucity of oral treatment options. Clearly, there is a need for agents that are of a new class that provides adequate tissue penetration, can be administered orally, and have broad-spectrum efficacy against fungal infections, including those caused by invasive mold organisms. Ibrexafungerp, an orally bioavailable glucan synthase inhibitor, is the first in a new class of triterpenoid antifungals and shares a similar target to the well-established echinocandins. Ibrexafungerp has a very favorable pharmacokinetic profile for the treatment of fungal infections with excellent tissue penetration in organs targeted by molds, such as the lungs, liver, and skin. Ibrexafungerp has demonstrated in vitro activity against Aspergillus spp. as well as efficacy in animal models of invasive aspergillosis and mucormycosis. Furthermore, ibrexafungerp is approved for use in the USA for the treatment of women with vulvovaginal candidiasis. Ibrexafungerp is currently being evaluated in clinical trials as monotherapy or in combination with other antifungals for treating invasive fungal infections caused by yeasts and molds. Thus, ibrexafungerp offers promise as a new addition to the clinician's armamentarium against these difficult-to-treat infections.
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- 2022
6. Global guideline for the diagnosis and management of the endemic mycoses: an initiative of the European Confederation of Medical Mycology in cooperation with the International Society for Human and Animal Mycology
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Thompson, George R, Le, Thuy, Chindamporn, Ariya, Kauffman, Carol A, Alastruey-Izquierdo, Ana, Ampel, Neil M, Andes, David R, Armstrong-James, Darius, Ayanlowo, Olusola, Baddley, John W, Barker, Bridget M, Lopes Bezerra, Leila, Buitrago, Maria J, Chamani-Tabriz, Leili, Chan, Jasper FW, Chayakulkeeree, Methee, Cornely, Oliver A, Cunwei, Cao, Gangneux, Jean-Pierre, Govender, Nelesh P, Hagen, Ferry, Hedayati, Mohammad T, Hohl, Tobias M, Jouvion, Grégory, Kenyon, Chris, Kibbler, Christopher C, Klimko, Nikolai, Kong, David CM, Krause, Robert, Lee Lee, Low, Meintjes, Graeme, Miceli, Marisa H, Rath, Peter-Michael, Spec, Andrej, Queiroz-Telles, Flavio, Variava, Ebrahim, Verweij, Paul E, Schwartz, Ilan S, and Pasqualotto, Alessandro C
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Infectious Diseases ,Prevention ,Emerging Infectious Diseases ,Vaccine Related ,Biodefense ,Infection ,Good Health and Well Being ,Animals ,Clinical Decision-Making ,Consensus ,Endemic Diseases ,Europe ,Global Health ,Guidelines as Topic ,Humans ,International Cooperation ,Mycoses ,Risk Factors ,Clinical Sciences ,Medical Microbiology ,Public Health and Health Services ,Microbiology - Abstract
The global burden of the endemic mycoses (blastomycosis, coccidioidomycosis, emergomycosis, histoplasmosis, paracoccidioidomycosis, sporotrichosis, and talaromycosis) continues to rise yearly and these infectious diseases remain a leading cause of patient morbidity and mortality worldwide. Management of the associated pathogens requires a thorough understanding of the epidemiology, risk factors, diagnostic methods and performance characteristics in different patient populations, and treatment options unique to each infection. Guidance on the management of these infections has the potential to improve prognosis. The recommendations outlined in this Review are part of the "One World, One Guideline" initiative of the European Confederation of Medical Mycology. Experts from 23 countries contributed to the development of these guidelines. The aim of this Review is to provide an up-to-date consensus and practical guidance in clinical decision making, by engaging physicians and scientists involved in various aspects of clinical management.
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- 2021
7. Invasive fungal disease in the immunocompromised host: changing epidemiology, new antifungal therapies, and management challenges
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Giannella, Maddalena, Lanternier, Fanny, Dellière, Sarah, Groll, Andreas H., Mueller, Nicolas J., Alastruey-Izquierdo, Ana, and Slavin, Monica A.
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- 2024
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8. MixInYeast: A Multicenter Study on Mixed Yeast Infections
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Medina, Narda, Soto-Debrán, Juan Carlos, Seidel, Danila, Akyar, Isin, Badali, Hamid, Barac, Aleksandra, Bretagne, Stéphane, Cag, Yasemin, Cassagne, Carole, Castro, Carmen, Chakrabarti, Arunaloke, Dannaoui, Eric, Cardozo, Celia, Garcia-Rodriguez, Julio, Guitard, Juliette, Hamal, Petr, Hoenigl, Martin, Jagielski, Tomasz, Khodavaisy, Sadegh, Lo Cascio, Giuliana, Martínez-Rubio, María Carmen, Meletiadis, Joseph, Muñoz, Patricia, Ochman, Elżbieta, Peláez, Teresa, Perez-Ayala Balzola, Ana, Prattes, Juergen, Roilides, Emmanuel, Ruíz-Pérez de Pipaón, Maite, Stauf, Raphael, Steinmann, Jörg, Suárez-Barrenechea, Ana Isabel, Tejero, Rocío, Trovato, Laura, Viñuela, Lourdes, Wongsuk, Thanwa, Żak, Iwona, Zarrinfar, Hossein, Lass-Flörl, Cornelia, Arikan-Akdagli, Sevtap, and Alastruey-Izquierdo, Ana
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Vaccine Related ,Biodefense ,Prevention ,Infectious Diseases ,Antimicrobial Resistance ,Infection ,yeast ,chrome agar ,invasive candidiasis ,Candida ,mix infections ,polymicrobial infections - Abstract
Invasive candidiasis remains one of the most prevalent systemic mycoses, and several studies have documented the presence of mixed yeast (MY) infections. Here, we describe the epidemiology, clinical, and microbiological characteristics of MY infections causing invasive candidiasis in a multicenter prospective study. Thirty-four centers from 14 countries participated. Samples were collected in each center between April to September 2018, and they were sent to a reference center to confirm identification by sequencing methods and to perform antifungal susceptibility testing, according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST). A total of 6895 yeast cultures were identified and MY occurred in 150 cases (2.2%). Europe accounted for the highest number of centers, with an overall MY rate of 4.2% (118 out of 2840 yeast cultures). Of 122 MY cases, the most frequent combinations were Candida albicans/C. glabrata (42, 34.4%), C. albicans/C. parapsilosis (17, 14%), and C. glabrata/C. tropicalis (8, 6.5%). All Candida isolates were susceptible to amphotericin B, 6.4% were fluconazole-resistant, and two isolates (1.6%) were echinocandin-resistant. Accurate identification of the species involved in MY infections is essential to guide treatment decisions.
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- 2021
9. MixInYeast: A Multicenter Study on Mixed Yeast Infections.
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Medina, Narda, Soto-Debrán, Juan Carlos, Seidel, Danila, Akyar, Isin, Badali, Hamid, Barac, Aleksandra, Bretagne, Stéphane, Cag, Yasemin, Cassagne, Carole, Castro, Carmen, Chakrabarti, Arunaloke, Dannaoui, Eric, Cardozo, Celia, Garcia-Rodriguez, Julio, Guitard, Juliette, Hamal, Petr, Hoenigl, Martin, Jagielski, Tomasz, Khodavaisy, Sadegh, Lo Cascio, Giuliana, Martínez-Rubio, María Carmen, Meletiadis, Joseph, Muñoz, Patricia, Ochman, Elżbieta, Peláez, Teresa, Perez-Ayala Balzola, Ana, Prattes, Juergen, Roilides, Emmanuel, Ruíz-Pérez de Pipaón, Maite, Stauf, Raphael, Steinmann, Jörg, Suárez-Barrenechea, Ana Isabel, Tejero, Rocío, Trovato, Laura, Viñuela, Lourdes, Wongsuk, Thanwa, Żak, Iwona, Zarrinfar, Hossein, Lass-Flörl, Cornelia, Arikan-Akdagli, Sevtap, and Alastruey-Izquierdo, Ana
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Candida ,chrome agar ,invasive candidiasis ,mix infections ,polymicrobial infections ,yeast - Abstract
Invasive candidiasis remains one of the most prevalent systemic mycoses, and several studies have documented the presence of mixed yeast (MY) infections. Here, we describe the epidemiology, clinical, and microbiological characteristics of MY infections causing invasive candidiasis in a multicenter prospective study. Thirty-four centers from 14 countries participated. Samples were collected in each center between April to September 2018, and they were sent to a reference center to confirm identification by sequencing methods and to perform antifungal susceptibility testing, according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST). A total of 6895 yeast cultures were identified and MY occurred in 150 cases (2.2%). Europe accounted for the highest number of centers, with an overall MY rate of 4.2% (118 out of 2840 yeast cultures). Of 122 MY cases, the most frequent combinations were Candida albicans/C. glabrata (42, 34.4%), C. albicans/C. parapsilosis (17, 14%), and C. glabrata/C. tropicalis (8, 6.5%). All Candida isolates were susceptible to amphotericin B, 6.4% were fluconazole-resistant, and two isolates (1.6%) were echinocandin-resistant. Accurate identification of the species involved in MY infections is essential to guide treatment decisions.
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- 2020
10. Diagnosis of Breakthrough Fungal Infections in the Clinical Mycology Laboratory: An ECMM Consensus Statement.
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Jenks, Jeffrey D, Gangneux, Jean-Pierre, Schwartz, Ilan S, Alastruey-Izquierdo, Ana, Lagrou, Katrien, Thompson Iii, George R, Lass-Flörl, Cornelia, Hoenigl, Martin, and European Confederation of Medical Mycology (ECMM) Council Investigators
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European Confederation of Medical Mycology (ECMM) Council Investigators ,breakthrough invasive fungal infections ,diagnostics ,endemic mycoses ,invasive candidiasis ,invasive mold infections - Abstract
Breakthrough invasive fungal infections (bIFI) cause significant morbidity and mortality. Their diagnosis can be challenging due to reduced sensitivity to conventional culture techniques, serologic tests, and PCR-based assays in patients undergoing antifungal therapy, and their diagnosis can be delayed contributing to poor patient outcomes. In this review, we provide consensus recommendations on behalf of the European Confederation for Medical Mycology (ECMM) for the diagnosis of bIFI caused by invasive yeasts, molds, and endemic mycoses, to guide diagnostic efforts in patients receiving antifungals and support the design of future clinical trials in the field of clinical mycology. The cornerstone of lab-based diagnosis of breakthrough infections for yeast and endemic mycoses remain conventional culture, to accurately identify the causative pathogen and allow for antifungal susceptibility testing. The impact of non-culture-based methods are not well-studied for the definite diagnosis of breakthrough invasive yeast infections. Non-culture-based methods have an important role for the diagnosis of breakthrough invasive mold infections, in particular invasive aspergillosis, and a combination of testing involving conventional culture, antigen-based assays, and PCR-based assays should be considered. Multiple diagnostic modalities, including histopathology, culture, antibody, and/or antigen tests and occasionally PCR-based assays may be required to diagnose breakthrough endemic mycoses. A need exists for diagnostic tests that are effective, simple, cheap, and rapid to enable the diagnosis of bIFI in patients taking antifungals.
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- 2020
11. CPAnet Registry-An International Chronic Pulmonary Aspergillosis Registry.
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Laursen, Christian B, Davidsen, Jesper Rømhild, Van Acker, Lander, Salzer, Helmut JF, Seidel, Danila, Cornely, Oliver A, Hoenigl, Martin, Alastruey-Izquierdo, Ana, Hennequin, Christophe, Godet, Cendrine, Barac, Aleksandra, Flick, Holger, Munteanu, Oxana, and Van Braeckel, Eva
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Aspergillus ,CPAnet ,antifungals ,chronic pulmonary aspergillosis ,diagnosis ,international collaboration ,registry ,treatment - Abstract
Chronic pulmonary aspergillosis (CPA) is a chronic fungal infection of the lung associated with high morbidity and mortality. The CPA Research network (CPAnet) registry established in 2018 is an international multicenter collaboration aiming to improve CPA knowledge and patient care. This study's aim was to describe the data collection process and content of CPAnet registry with preliminary clinical data. In the CPAnet registry, clinical data are collected through a web-based questionnaire. Data include CPA phenotype, comorbidities, treatment, outcome, and follow-up from several international centers. An exemplary descriptive analysis was performed on 74 patients, who were registered online before April 2020. CPA patients were predominantly (72%) male, 39% had chronic obstructive pulmonary disease, and 68% had a history of smoking. Chronic cavitary pulmonary aspergillosis was the most common CPA subtype (62%). In 32 patients (52%), voriconazole was the preferred first-line therapy. The multicenter multinational CPAnet registry is a valuable approach to gather comprehensive data on a large study population and reflects real-world clinical practice rather than focusing on specific patient populations in more specialized centers. Additional CPA reference centers are being encouraged to join this promising clinical research collaboration.
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- 2020
12. Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium
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Cornely, Oliver A, Alastruey-Izquierdo, Ana, Arenz, Dorothee, Chen, Sharon CA, Dannaoui, Eric, Hochhegger, Bruno, Hoenigl, Martin, Jensen, Henrik E, Lagrou, Katrien, Lewis, Russell E, Mellinghoff, Sibylle C, Mer, Mervyn, Pana, Zoi D, Seidel, Danila, Sheppard, Donald C, Wahba, Roger, Akova, Murat, Alanio, Alexandre, Al-Hatmi, Abdullah MS, Arikan-Akdagli, Sevtap, Badali, Hamid, Ben-Ami, Ronen, Bonifaz, Alexandro, Bretagne, Stéphane, Castagnola, Elio, Chayakulkeeree, Methee, Colombo, Arnaldo L, Corzo-León, Dora E, Drgona, Lubos, Groll, Andreas H, Guinea, Jesus, Heussel, Claus-Peter, Ibrahim, Ashraf S, Kanj, Souha S, Klimko, Nikolay, Lackner, Michaela, Lamoth, Frederic, Lanternier, Fanny, Lass-Floerl, Cornelia, Lee, Dong-Gun, Lehrnbecher, Thomas, Lmimouni, Badre E, Mares, Mihai, Maschmeyer, Georg, Meis, Jacques F, Meletiadis, Joseph, Morrissey, C Orla, Nucci, Marcio, Oladele, Rita, Pagano, Livio, Pasqualotto, Alessandro, Patel, Atul, Racil, Zdenek, Richardson, Malcolm, Roilides, Emmanuel, Ruhnke, Markus, Seyedmousavi, Seyedmojtaba, Sidharthan, Neeraj, Singh, Nina, Sinko, János, Skiada, Anna, Slavin, Monica, Soman, Rajeev, Spellberg, Brad, Steinbach, William, Tan, Ban Hock, Ullmann, Andrew J, Vehreschild, Jörg J, Vehreschild, Maria JGT, Walsh, Thomas J, White, P Lewis, Wiederhold, Nathan P, Zaoutis, Theoklis, Chakrabarti, Arunaloke, and Group, Mucormycosis ECMM MSG Global Guideline Writing
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Clinical Research ,Good Health and Well Being ,Disease Management ,Humans ,Mucormycosis ,Mucormycosis ECMM MSG Global Guideline Writing Group ,Clinical Sciences ,Medical Microbiology ,Public Health and Health Services ,Microbiology - Abstract
Mucormycosis is a difficult to diagnose rare disease with high morbidity and mortality. Diagnosis is often delayed, and disease tends to progress rapidly. Urgent surgical and medical intervention is lifesaving. Guidance on the complex multidisciplinary management has potential to improve prognosis, but approaches differ between health-care settings. From January, 2018, authors from 33 countries in all United Nations regions analysed the published evidence on mucormycosis management and provided consensus recommendations addressing differences between the regions of the world as part of the "One World One Guideline" initiative of the European Confederation of Medical Mycology (ECMM). Diagnostic management does not differ greatly between world regions. Upon suspicion of mucormycosis appropriate imaging is strongly recommended to document extent of disease and is followed by strongly recommended surgical intervention. First-line treatment with high-dose liposomal amphotericin B is strongly recommended, while intravenous isavuconazole and intravenous or delayed release tablet posaconazole are recommended with moderate strength. Both triazoles are strongly recommended salvage treatments. Amphotericin B deoxycholate is recommended against, because of substantial toxicity, but may be the only option in resource limited settings. Management of mucormycosis depends on recognising disease patterns and on early diagnosis. Limited availability of contemporary treatments burdens patients in low and middle income settings. Areas of uncertainty were identified and future research directions specified.
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- 2019
13. The challenges of the genome-based identification of antifungal resistance in the clinical routine
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Ana Alastruey-Izquierdo and Antonio J. Martín-Galiano
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amphotericin B ,antimicrobial target ,Aspergillus ,azoles ,Candida ,Cryptococcus ,Microbiology ,QR1-502 - Abstract
The increasing number of chronic and life-threatening infections caused by antimicrobial resistant fungal isolates is of critical concern. Low DNA sequencing cost may facilitate the identification of the genomic profile leading to resistance, the resistome, to rationally optimize the design of antifungal therapies. However, compared to bacteria, initiatives for resistome detection in eukaryotic pathogens are underdeveloped. Firstly, reported mutations in antifungal targets leading to reduced susceptibility must be extensively collected from the literature to generate comprehensive databases. This information should be complemented with specific laboratory screenings to detect the highest number possible of relevant genetic changes in primary targets and associations between resistance and other genomic markers. Strikingly, some drug resistant strains experience high-level genetic changes such as ploidy variation as much as duplications and reorganizations of specific chromosomes. Such variations involve allelic dominance, gene dosage increments and target expression regime effects that should be explicitly parameterized in antifungal resistome prediction algorithms. Clinical data indicate that predictors need to consider the precise pathogen species and drug levels of detail, instead of just genus and drug class. The concomitant needs for mutation accuracy and assembly quality assurance suggest hybrid sequencing approaches involving third-generation methods will be utilized. Moreover, fatal fast infections, like fungemia and meningitis, will further require both sequencing and analysis facilities are available in-house. Altogether, the complex nature of antifungal resistance demands extensive sequencing, data acquisition and processing, bioinformatic analysis pipelines, and standard protocols to be accomplished prior to genome-based protocols are applied in the clinical setting.
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- 2023
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14. Aspergillosis by cryptic Aspergillus species: A case series and review of the literature
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Fernandez-Pittol, Mariana, Alejo-Cancho, Izaskun, Rubio-García, Elisa, Cardozo, Celia, Puerta-Alcalde, Pedro, Moreno-García, Estela, Garcia-Pouton, Nicole, Garrido, Miriam, Villanueva, Miriam, Alastruey-Izquierdo, Ana, Pitart, Cristina, Garcia-Vidal, Carolina, and Marco, Francesc
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- 2022
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15. Case Definition of Chronic Pulmonary Aspergillosis in Resource-Constrained Settings - Volume 24, Number 8—August 2018 - Emerging Infectious Diseases journal - CDC
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Denning, David W, Page, Iain D, Chakaya, Jeremiah, Jabeen, Kauser, Jude, Cecilia M, Cornet, Muriel, Alastruey-Izquierdo, Ana, Bongomin, Felix, Bowyer, Paul, Chakrabarti, Arunaloke, Gago, Sara, Guto, John, Hochhegger, Bruno, Hoenigl, Martin, Irfan, Muhammad, Irurhe, Nicholas, Izumikawa, Koichi, Kirenga, Bruce, Manduku, Veronica, Moazam, Samihah, Oladele, Rita O, Richardson, Malcolm D, Tudela, Juan Luis Rodriguez, Rozaliyani, Anna, Salzer, Helmut JF, Sawyer, Richard, Simukulwa, Nasilele F, Skrahina, Alena, Sriruttan, Charlotte, Setianingrum, Findra, Wilopo, Bayu AP, Cole, Donald C, and Getahun, Haileyesus
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Tuberculosis ,Biodefense ,Lung ,Emerging Infectious Diseases ,Infectious Diseases ,Vaccine Related ,Prevention ,Rare Diseases ,Infection ,Good Health and Well Being ,Chronic Disease ,Developing Countries ,Humans ,Practice Guidelines as Topic ,Pulmonary Aspergillosis ,Socioeconomic Factors ,Aspergillus ,antibody ,aspergilloma ,developing countries ,fungi ,imaging ,resource-constrained settings ,tuberculosis and other mycobacteria ,Clinical Sciences ,Medical Microbiology ,Public Health and Health Services ,Microbiology - Abstract
Chronic pulmonary aspergillosis (CPA) is a recognized complication of pulmonary tuberculosis (TB). In 2015, the World Health Organization reported 2.2 million new cases of nonbacteriologically confirmed pulmonary TB; some of these patients probably had undiagnosed CPA. In October 2016, the Global Action Fund for Fungal Infections convened an international expert panel to develop a case definition of CPA for resource-constrained settings. This panel defined CPA as illness for >3 months and all of the following: 1) weight loss, persistent cough, and/or hemoptysis; 2) chest images showing progressive cavitary infiltrates and/or a fungal ball and/or pericavitary fibrosis or infiltrates or pleural thickening; and 3) a positive Aspergillus IgG assay result or other evidence of Aspergillus infection. The proposed definition will facilitate advancements in research, practice, and policy in lower- and middle-income countries as well as in resource-constrained settings.
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- 2018
16. Reply to Kidd et al., “Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion”
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de Hoog, Sybren, primary, Walsh, Thomas J., additional, Ahmed, Sarah A., additional, Alastruey-Izquierdo, Ana, additional, Alexander, Barbara D., additional, Arendrup, Maiken Cavling, additional, Babady, Esther, additional, Bai, Feng-Yan, additional, Balada-Llasat, Joan-Miquel, additional, Borman, Andrew, additional, Chowdhary, Anuradha, additional, Clark, Andrew, additional, Colgrove, Robert C., additional, Cornely, Oliver A., additional, Dingle, Tanis C., additional, Dufresne, Philippe J., additional, Fuller, Jeff, additional, Gangneux, Jean-Pierre, additional, Gibas, Connie, additional, Glasgow, Heather, additional, Graser, Yvonne, additional, Guillot, Jacques, additional, Groll, Andreas H., additional, Haase, Gerhard, additional, Hanson, Kimberly, additional, Harrington, Amanda, additional, Hawksworth, David L., additional, Hayden, Randall T., additional, Hoenigl, Martin, additional, Hubka, Vit, additional, Johnson, Kristie, additional, Kus, Julianne V., additional, Li, Ruoyu, additional, Meis, Jacques F., additional, Lackner, Michaela, additional, Lanternier, Fanny, additional, Leal, Sixto M., additional, Lee, Francesca, additional, Lockhart, Shawn R., additional, Luethy, Paul, additional, Martin, Isabella, additional, Kwon-Chung, Kyung J., additional, Meyer, Wieland, additional, Nguyen, M. Hong, additional, Ostrosky-Zeichner, Luis, additional, Palavecino, Elizabeth, additional, Pancholi, Preeti, additional, Pappas, Peter G., additional, Procop, Gary W., additional, Redhead, Scott A., additional, Rhoads, Daniel D., additional, Riedel, Stefan, additional, Stevens, Bryan, additional, Sullivan, Kaede Ota, additional, Vergidis, Paschalis, additional, Roilides, Emmanuel, additional, Seyedmousavi, Amir, additional, Tao, Lili, additional, Vicente, Vania A., additional, Vitale, Roxana G., additional, Wang, Qi-Ming, additional, Wengenack, Nancy L., additional, Westblade, Lars, additional, Wiederhold, Nathan, additional, White, Lewis, additional, Wojewoda, Christina M., additional, and Zhang, Sean X., additional
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- 2024
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17. Impact of the COVID-19 pandemic on HIV care in Guatemala
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Pérez, Oscar Eduardo López, Barrientos, Brenan Ortiz, Muñoz, Vilma Alejandrina Reyes, Aguilar, Gladys Sajché, Andrade, Aura Marina Méndez, Marina de León, Luis Roberto Santa, Alcázar, Ana Lucía Gómez, González, Eduardo Celada, Quiñónez M, Gustavo A., Sontay, Germán Orlando Cuyuch, Marín, Alba Virtud Contreras, de Lourdes Fong Araujo, María, Guzmán, Brenda, Medina, Narda, Alastruey-Izquierdo, Ana, Bonilla, Oscar, Ortíz, Brenan, Gamboa, Osmar, Salazar, Luis Roberto, Mercado, Danicela, Pérez, Juan C., Denning, David W., Arathoon, Eduardo, and Rodriguez-Tudela, Juan Luis
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- 2021
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18. Impact of the COVID-19 pandemic on HIV care in Guatemala
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Narda Medina, Ana Alastruey-Izquierdo, Oscar Bonilla, Brenan Ortíz, Osmar Gamboa, Luis Roberto Salazar, Danicela Mercado, Juan C. Pérez, David W. Denning, Eduardo Arathoon, Juan Luis Rodriguez-Tudela, Oscar Eduardo López Pérez, Brenan Ortiz Barrientos, Vilma Alejandrina Reyes Muñoz, Gladys Sajché Aguilar, Aura Marina Méndez Andrade, Luis Roberto Santa Marina de León, Ana Lucía Gómez Alcázar, Eduardo Celada González, Gustavo A. Quiñónez M, Germán Orlando Cuyuch Sontay, Alba Virtud Contreras Marín, María de Lourdes Fong Araujo, and Brenda Guzmán
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COVID-19 ,HIV testing ,Opportunistic infections ,Healthcare attention ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: To describe the impact of the coronavirus disease 2019 (COVID-19) pandemic on the diagnosis of human immunodeficiency virus (HIV) and deaths from opportunistic infections in Guatemala. Methods: A retrospective study was conducted to investigate the impact of the COVID-19 pandemic on people with HIV at a referral clinic (Clinica Familiar Luis Angel García, CFLAG), as well as the disruption of services at a diagnostic laboratory hub (DLH) which provides diagnosis for opportunistic infections to a network of 13 HIV healthcare facilities. Comparative analysis was undertaken using the months March–August from two different time periods: (i) pre-COVID-19 (2017–2019); and (ii) during the COVID-19 period (2020). Results: During the COVID-19 period, 7360 HIV tests were performed at Clinica Familiar Luis Angel García, compared with an average of 16,218 tests in the pre-COVID-19 period; a reduction of 54.7% [95% confidence interval (CI) 53.8–55.4%],Deaths from opportunistic infections at 90 days were 10.7% higher in 2020 compared with 2019 (27.3% vs 16.6%; P = 0.05). Clinical samples sent to the DLH for diagnosis of opportunistic infections decreased by 43.7% in 2020 (95% CI 41.0–46.2%). Conclusion: The COVID-19 pandemic is having a substantial impact on HIV care in Guatemala. Diagnostic services for HIV have been severely affected and deaths from opportunistic infections have increased. The lessons learnt must guide the introduction of strategies to reduce the impact of the pandemic.
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- 2021
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19. Updated estimated incidence and prevalence of serious fungal infections in Trinidad and Tobago
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Edwards, Robert Jeffrey, Boyce, Gregory, Alastruey-Izquierdo, Ana, and Denning, David W.
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- 2021
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20. Eumycetoma causative agents:A systematic review to inform the World Health Organization priority list of fungal pathogens
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Clark, Julia E, Kim, Hannah Yejin, van de Sande, Wendy W J, McMullan, Brendan, Verweij, Paul, Alastruey-Izquierdo, Ana, Chakrabarti, Arunaloke, Harrison, Thomas S, Bongomin, Felix, Hay, Roderick J, Oladele, Rita, Heim, Jutta, Beyer, Peter, Galas, Marcelo, Siswanto, Siswanto, Dagne, Daniel Argaw, Roitberg, Felipe, Gigante, Valeria, Beardsley, Justin, Sati, Hatim, Alffenaar, Jan-Willem, Morrissey, C Orla, Clark, Julia E, Kim, Hannah Yejin, van de Sande, Wendy W J, McMullan, Brendan, Verweij, Paul, Alastruey-Izquierdo, Ana, Chakrabarti, Arunaloke, Harrison, Thomas S, Bongomin, Felix, Hay, Roderick J, Oladele, Rita, Heim, Jutta, Beyer, Peter, Galas, Marcelo, Siswanto, Siswanto, Dagne, Daniel Argaw, Roitberg, Felipe, Gigante, Valeria, Beardsley, Justin, Sati, Hatim, Alffenaar, Jan-Willem, and Morrissey, C Orla
- Abstract
The World Health Organization, in response to the growing burden of fungal disease, established a process to develop a fungal priority pathogens list. This systematic review aimed to evaluate the epidemiology and impact of eumycetoma. PubMed and Web of Science were searched to identify studies published between 1 January 2011 and 19 February 2021. Studies reporting on mortality, inpatient care, complications and sequelae, antifungal susceptibility, risk factors, preventability, annual incidence, global distribution, and emergence during the study time frames were selected. Overall, 14 studies were eligible for inclusion. Morbidity was frequent with moderate to severe impairment of quality of life in 60.3%, amputation in up to 38.5%, and recurrent or long-term disease in 31.8%-73.5% of patients. Potential risk factors included male gender (56.6%-79.6%), younger age (11-30 years; 64%), and farming occupation (62.1%-69.7%). Mycetoma was predominantly reported in Sudan, particularly in central Sudan (37%-76.6% of cases). An annual incidence of 0.1/100 000 persons and 0.32/100 000 persons/decade was reported in the Philippines and Uganda, respectively. In Uganda, a decline in incidence from 3.37 to 0.32/100 000 persons between two consecutive 10-year periods (2000-2009 and 2010-2019) was detected. A community-based, multi-pronged prevention programme was associated with a reduction in amputation rates from 62.8% to 11.9%. With the pre-specified criteria, no studies of antifungal drug susceptibility, mortality, and hospital lengths of stay were identified. Future research should include larger cohort studies, greater drug susceptibility testing, and global surveillance to develop evidence-based treatment guidelines and to determine more accurately the incidence and trends over time.
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- 2024
21. Beyond bacteria: the growing threat of antifungal resistance
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van Rhijn, Norman, Arikan-Akdagli, Sevtap, Beardsley, Justin, Bongomin, Felix, Chakrabarti, Arunaloke, Chen, Sharon C-A, Chiller, Tom, Lopes Colombo, Arnaldo, Govender, Nelesh P, Alastruey-Izquierdo, Ana, Kidd, Sarah E, Lackner, Michaela, Li, Ruoyu, Hagen, Ferry, van Rhijn, Norman, Arikan-Akdagli, Sevtap, Beardsley, Justin, Bongomin, Felix, Chakrabarti, Arunaloke, Chen, Sharon C-A, Chiller, Tom, Lopes Colombo, Arnaldo, Govender, Nelesh P, Alastruey-Izquierdo, Ana, Kidd, Sarah E, Lackner, Michaela, Li, Ruoyu, and Hagen, Ferry
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- 2024
22. Beyond bacteria: the growing threat of antifungal resistance
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MMB Medische Staf, MMB, van Rhijn, Norman, Arikan-Akdagli, Sevtap, Beardsley, Justin, Bongomin, Felix, Chakrabarti, Arunaloke, Chen, Sharon C.A., Chiller, Tom, Lopes Colombo, Arnaldo, Govender, Nelesh P., Alastruey-Izquierdo, Ana, Kidd, Sarah E., Lackner, Michaela, Li, Ruoyu, Hagen, Ferry, MMB Medische Staf, MMB, van Rhijn, Norman, Arikan-Akdagli, Sevtap, Beardsley, Justin, Bongomin, Felix, Chakrabarti, Arunaloke, Chen, Sharon C.A., Chiller, Tom, Lopes Colombo, Arnaldo, Govender, Nelesh P., Alastruey-Izquierdo, Ana, Kidd, Sarah E., Lackner, Michaela, Li, Ruoyu, and Hagen, Ferry
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- 2024
23. WHO global research priorities for antimicrobial resistance in human health
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Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, Weezenbeek, Kitty Van, Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, Zignol, Matteo, Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, Weezenbeek, Kitty Van, Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish, Applegate, Tanya, Araj, George F, Villalobos, Marlen Arce, Årdal, Christine, Ashiru-Oredope, Diane, Ashley, Elizabeth A, Babin, François-Xavier, Bachmann, Laura H, Bachmann, Till, Baker, Kate Susan, Balasegaram, Manica, Bamford, Colleen, Baquero, Fernando, Barcelona, Laura Isabel, Bassat, Quique, Bassetti, Matteo, Basu, Sulagna, Beardsley, Justin, Vásquez, Grey Benoit, Berkley, James A, Bhatnagar, Anuj K, Bielicki, Julia, Bines, Julie, Bongomin, Felix, Bonomo, Robert A, Bradley, John S, Bradshaw, Catriona, Brett, Ana, Brink, Adrian, Brown, Colin, Brown, Jeremy, Buising, Kirsty, Carson, Carolee, Carvalho, Anna Cristina, Castagnola, Elio, Cavaleri, Marco, Cecchini, Michele, Chabala, Chishala, Chaisson, Richard E, Chakrabarti, Arunaloke, Chandler, Clare, Chandy, Sujith John, Charani, Esmita, Chen, Lisa, Chiara, Francesca, Chowdhary, Anuradha, Chua, Arlene, Chuki, Pem, Chun, Doo Ryeon, Churchyard, Gavin, Cirillo, Daniela, Clack, Lauren, Coffin, Susan E, Cohn, Jennifer, Cole, Michelle, Conly, John, Cooper, Ben, Corso, Alejandra, Cosgrove, Sara E, Cox, Helen, Daley, Charles L, Darboe, Saffiatou, Darton, Tom, Davies, Gerry, de Egea, Viviana, Dedeić-Ljubović, Amela, Deeves, Miranda, Denkinger, Claudia, Dillon, Jo-Anne R, Dramowski, Angela, Eley, Brian, Roberta Esposito, Susanna Maria, Essack, Sabiha Y, Farida, Helmia, Farooqi, Joveria, Feasey, Nicholas, Ferreyra, Cecilia, Fifer, Helen, Finlayson, Heather, Frick, Mike, Gales, Ana Cristina, Galli, Luisa, Gandra, Sumanth, Gerber, Jeffrey S, Giske, Christian, Gordon, Bruce, Govender, Nelesh, Guessennd, Nathalie, Guindo, Ibrehima, Gurbanova, Elmira, Gwee, Amanda, Hagen, Ferry, Harbarth, Stephan, Haze, John, Heim, Jutta, Hendriksen, Rene, Heyderman, Robert Simon, Holt, Kathryn Elizabeth, Hönigl, Martin, Hook, Edward W, Hope, William, Hopkins, Heidi, Hughes, Gwenda, Ismail, Ghada, Issack, Mohammad Iqbal, Jacobs, Jan, Jasovský, Dušan, Jehan, Fyeza, Pearson, Antonieta Jimenez, Jones, Makoto, Joshi, Mohan P, Kapil, Arti, Kariuki, Samuel, Karkey, Abhilasha, Kearns, Gregory L, Keddy, Karen Helena, Khanna, Nina, Kitamura, Akiko, Kolho, Kaija-Leena, Kontoyiannis, Dimitrios P, Kotwani, Anita, Kozlov, Roman S, Kranzer, Katharina, Kularatne, Ranmini, Lahra, Monica M, Langford, Bradley J, Laniado-Laborin, Rafael, Larsson, Joakim, Lass-Flörl, Cornelia, Le Doare, Kirsty, Lee, Hyukmin, Lessa, Fernanda, Levin, Anna S, Limmathurotsakul, Direk, Lincopan, Nilton, Lo Vecchio, Andrea, Lodha, Rakesh, Loeb, Mark, Longtin, Yves, Lye, David Chien, Mahmud, Asif Mujtaba, Manaia, Célia, Manderson, Lenore, Mareković, Ivana, Marimuthu, Kalisvar, Martin, Irene, Mashe, Tapfumanei, Mei, Zeng, Meis, Jacques F, Lyra Tavares De Melo, Flávio Augusto, Mendelson, Marc, Miranda, Angelica Espinosa, Moore, David, Morel, Chantal, Moremi, Nyambura, Moro, Maria Luisa, Moussy, Francis, Mshana, Stephen, Mueller, Arno, Ndow, Francis J, Nicol, Mark, Nunn, Andrew, Obaro, Stephen, Obiero, Christina W, Okeke, Iruka N, Okomo, Uduak, Okwor, Tochi J, Oladele, Rita, Omulo, Sylvia, Ondoa, Pascale, Ortellado de Canese, Juana Medarda, Ostrosky-Zeichner, Luis, Padoveze, Maria Clara, Pai, Madhukar, Park, Benjamin, Parkhill, Julian, Parry, Christopher M, Peeling, Rosanna, Sobreira Vieira Peixe, Luísa Maria, Perovic, Olga, Pettigrew, Melinda M, Principi, Nicola, Pulcini, Céline, Puspandari, Nelly, Rawson, Timothy, Reddy, Denasha Lavanya, Reddy, Kessendri, Redner, Paulo, Rodríguez Tudela, Juan Luis, Rodríguez-Baño, Jesús, Van Katwyk, Susan Rogers, Roilides, Emmanuel, Rollier, Christine, Rollock, Leslie, Ronat, Jean-Baptiste, Ruppe, Etienne, Sadarangani, Manish, Salisbury, David, Salou, Mounerou, Samison, Luc Hervé, Sanguinetti, Maurizio, Sartelli, Massimo, Schellack, Natalie, Schouten, Jeroen, Schwaber, Mitchell J, Seni, Jeremiah, Senok, Abiola, Shafer, William M, Shakoor, Sadia, Sheppard, Donald, Shin, Jong-Hee, Sia, Sonia, Sievert, Dawn, Singh, Ishwar, Singla, Rupak, Skov, Robert Leo, Soge, Olusegun O, Sprute, Rosanne, Srinivasan, Arjun, Srinivasan, Subasree, Sundsfjord, Arnfinn, Tacconelli, Evelina, Tahseen, Sabira, Tangcharoensathien, Viroj, Tängdén, Thomas, Thursky, Karin, Thwaites, Guy, Tigulini de Souza Peral, Renata, Tong, Deborah, Tootla, Hafsah Deepa, Tsioutis, Constantinos, Turner, Katy M, Turner, Paul, Omar, Shaheed Vally, van de Sande, Wendy WJ, van den Hof, Susan, van Doorn, Rogier, Veeraraghavan, Balaji, Verweij, Paul, Wahyuningsih, Retno, Wang, Hui, Warris, Adilia, Weinstock, Hillard, Wesangula, Evelyn, Whiley, David, White, Peter J, Williams, Phoebe, Xiao, Yonghong, Moscoso, Martin Yagui, Yang, Hsu Li, Yoshida, Sachiyo, Yu, Yunsong, Żabicka, Dorota, and Zignol, Matteo
- Abstract
The WHO research agenda for antimicrobial resistance (AMR) in human health has identified 40 research priorities to be addressed by the year 2030. These priorities focus on bacterial and fungal pathogens of crucial importance in addressing AMR, including drug-resistant pathogens causing tuberculosis. These research priorities encompass the entire people-centred journey, covering prevention, diagnosis, and treatment of antimicrobial-resistant infections, in addition to addressing the overarching knowledge gaps in AMR epidemiology, burden and drivers, policies and regulations, and awareness and education. The research priorities were identified through a multistage process, starting with a comprehensive scoping review of knowledge gaps, with expert inputs gathered through a survey and open call. The priority setting involved a rigorous modified Child Health and Nutrition Research Initiative approach, ensuring global representation and applicability of the findings. The ultimate goal of this research agenda is to encourage research and investment in the generation of evidence to better understand AMR dynamics and facilitate policy translation for reducing the burden and consequences of AMR.
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- 2024
24. Invasive Fusariosis in Nonneutropenic Patients, Spain, 2000–2015
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Elena Pérez-Nadales, Ana Alastruey-Izquierdo, María José Linares-Sicilia, Juan Carlos Soto-Debrán, Edson Abdala, Julio García-Rodríguez, Miguel Montejo, Patricia Muñoz, Miguel Salavert Lletí, Antonio Rezusta, Maite Ruiz Pérez de Pipaón, Lucrecia Yáñez, Esperanza Merino, María Isolina Campos-Herrero, José María Costa-Mateo, Jesús Fortún, Tomás García-Lozano, Carolina Garcia-Vidal, Mario Fernández-Ruiz, Ferrán Sánchez-Reus, Carmen Castro-Méndez, Inmaculada Guerrero-Lozano, Pere Soler-Palacín, José María Aguado, Luis Martínez-Martínez, Julian Torre-Cisneros, and Marcio Nucci
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Fusarium ,invasive fusariosis ,incidence ,mortality ,neutropenia ,fusariosis ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Invasive fusariosis (IF) is associated with severe neutropenia in patients with concurrent hematologic conditions. We conducted a retrospective observational study to characterize the epidemiology of IF in 18 Spanish hospitals during 2000–2015. In that time, the frequency of IF in nonneutropenic patients increased from 0.08 cases per 100,000 admissions in 2000–2009 to 0.22 cases per 100,000 admissions in 2010–2015. Nonneutropenic IF patients often had nonhematologic conditions, such as chronic cardiac or lung disease, rheumatoid arthritis, history of solid organ transplantation, or localized fusariosis. The 90-day death rate among nonneutropenic patients (28.6%) and patients with resolved neutropenia (38.1%) was similar. However, the death rate among patients with persistent neutropenia (91.3%) was significantly higher. We used a multivariate Cox regression analysis to characterize risk factors for death: persistent neutropenia was the only risk factor for death, regardless of antifungal therapy.
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- 2021
- Full Text
- View/download PDF
25. Successful treatment of invasive aspergillosis caused by Aspergillus parafelis in a kidney transplant recipient
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Antonia Calvo-Cano, Eugenio Garduño-Eseverri, Ana Alastruey-Izquierdo, Román Hernández-Gallego, Rocío Martínez-Gallardo, and Francisco Félix Rodríguez-Vidigal
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Aspergillus ,Aspergillus parafelis ,Invasive aspergillosis ,Kidney transplant ,Azole-resistant aspergillosis ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Invasive aspergillosis (IA) is associated with a high mortality rate in kidney-transplant recipients. Azole-resistance is increasing in Aspergillus fumigatus. We report a clinical case of a kidney-transplant recipient with cerebellar and pulmonary aspergillosis caused by azole-resistant Aspergillus parafelis (molecular identification through β-tubulin sequence). The patient experienced an effective resolution after three surgical procedures and associated antifungal therapy. This case highlights that azole-resistant aspergillosis should be considered in every patient with IA as long as susceptibility testing results are not known. Therefore, in selected patients with IA and central nervous system involvement, empirical combination antifungal therapy could be considered.
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- 2020
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26. Invasive Fusariosis in Nonneutropenic Patients, Spain, 2000-2015
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Perez-Nadales, Elena, Alastruey-Izquierdo, Ana, Linares-Sicilia, Maria Jose, Soto-Debran, Juan Carlos, Abdala, Edson, Garcia-Rodriguez, Julio, Montejo, Miguel, Munoz, Patricia, Lleti, Miguel Salavert, Rezusta, Antonio, de Pipaon, Maite Ruiz Perez, Yanez, Lucrecia, Merino, Esperanza, Campos-Herrero, Maria Isolina, Costa-Mateo, Jose Maria, Fortun, Jesus, Garcia-Lozano, Tomas, Garcia-Vidal, Carolina, Fernandez-Ruiz, Mario, Sanchez-Reus, Ferran, Castro-Mendez, Carmen, Guerrero-Lozano, Inmaculada, Soler-Palacin, Pere, Aguado, Jose Maria, Martinez-Martinez, Luis, Torre-Cisneros, Julian, and Nucci, Marcio
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Neutropenia -- Complications and side effects -- Demographic aspects ,Mycoses -- Diagnosis -- Risk factors -- Demographic aspects ,Fusarium -- Health aspects ,Health - Abstract
Invasive fusariosis (IF) is a fungal disease that mostly affects patients with hematologic malignancies or who have received hematopoietic cell transplants. These patients often have prolonged and profound neutropenia, low [...]
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- 2021
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27. Fungal co-infection in COVID-19 patients: Should we be concerned?
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Pemán, Javier, Ruiz-Gaitán, Alba, García-Vidal, Carolina, Salavert, Miguel, Ramírez, Paula, Puchades, Francesc, García-Hita, Marta, Alastruey-Izquierdo, Ana, and Quindós, Guillermo
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- 2020
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28. Digital Platform for Automatic Qualitative and Quantitative Reading of a Cryptococcal Antigen Point-of-Care Assay Leveraging Smartphones and Artificial Intelligence
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David Bermejo-Peláez, Narda Medina, Elisa Álamo, Juan Carlos Soto-Debran, Oscar Bonilla, Miguel Luengo-Oroz, Juan Luis Rodriguez-Tudela, and Ana Alastruey-Izquierdo
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lateral flow assay (LFA) ,rapid diagnostic test (POCT) ,smartphone ,artificial intelligence (AI) ,Cryptococcus ,cryptococcal antigen ,Biology (General) ,QH301-705.5 - Abstract
Cryptococcosis is a fungal infection that causes serious illness, particularly in immunocompromised individuals such as people living with HIV. Point of care tests (POCT) can help identify and diagnose patients with several advantages including rapid results and ease of use. The cryptococcal antigen (CrAg) lateral flow assay (LFA) has demonstrated excellent performance in diagnosing cryptococcosis, and it is particularly useful in resource-limited settings where laboratory-based tests may not be readily available. The use of artificial intelligence (AI) for the interpretation of rapid diagnostic tests can improve the accuracy and speed of test results, as well as reduce the cost and workload of healthcare professionals, reducing subjectivity associated with its interpretation. In this work, we analyze a smartphone-based digital system assisted by AI to automatically interpret CrAg LFA as well as to estimate the antigen concentration in the strip. The system showed excellent performance for predicting LFA qualitative interpretation with an area under the receiver operating characteristic curve of 0.997. On the other hand, its potential to predict antigen concentration based solely on a photograph of the LFA has also been demonstrated, finding a strong correlation between band intensity and antigen concentration, with a Pearson correlation coefficient of 0.953. The system, which is connected to a cloud web platform, allows for case identification, quality control, and real-time monitoring.
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- 2023
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29. Diagnostic Mycology Laboratories Should Have a Central Role for the Management of Fungal Disease
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Narda Medina, Ana Alastruey-Izquierdo, Danicela Mercado, David W. Denning, Eduardo Arathoon, and Juan Luis Rodriguez-Tudela
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public health ,Latin America ,HIV ,opportunistic infections ,tuberculosis ,histoplasmosis ,Biology (General) ,QH301-705.5 - Abstract
The absence of awareness of fungal diseases as part of the differential diagnosis in at-risk populations has severe consequences. Here, we show how the active role of laboratories can improve patients’ survival. Recently, major advances have been made in non-culture-based assays for fungal diseases, improving accuracy and turnaround time. Furthermore, with the introduction of proficiency control systems, laboratories are an easily monitored environment with good analytical accuracy. Diagnostic packages for opportunistic infections can overcome many deficiencies caused by the absence of awareness. In Guatemala, to make diagnosis accessible, we set up a diagnostic laboratory hub (DLH) providing screening for cryptococcosis, histoplasmosis and tuberculosis to a network of 13 healthcare facilities attending people living with HIV (PLWHIV). In two years, we screened 2127 newly HIV-diagnosed patients. The frequency of opportunistic infections was 21%, rising to 30.3% in patients with advanced HIV disease (
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- 2022
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30. Examining Signatures of Natural Selection in Antifungal Resistance Genes Across Aspergillus Fungi
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Renato Augusto Corrêa dos Santos, Matthew E. Mead, Jacob L. Steenwyk, Olga Rivero-Menéndez, Ana Alastruey-Izquierdo, Gustavo Henrique Goldman, and Antonis Rokas
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section Fumigati ,antifungal drug resistance ,positive selection ,cryptic species ,azole ,Aspergillus fumigatus ,Plant culture ,SB1-1110 - Abstract
Certain Aspergillus fungi cause aspergillosis, a set of diseases that typically affect immunocompromised individuals. Most cases of aspergillosis are caused by Aspergillus fumigatus, which infects millions of people annually. Some closely related so-called cryptic species, such as Aspergillus lentulus, can also cause aspergillosis, albeit at lower frequencies, and they are also clinically relevant. Few antifungal drugs are currently available for treating aspergillosis and there is increasing worldwide concern about the presence of antifungal drug resistance in Aspergillus species. Furthermore, isolates from both A. fumigatus and other Aspergillus pathogens exhibit substantial heterogeneity in their antifungal drug resistance profiles. To gain insights into the evolution of antifungal drug resistance genes in Aspergillus, we investigated signatures of positive selection in 41 genes known to be involved in drug resistance across 42 susceptible and resistant isolates from 12 Aspergillus section Fumigati species. Using codon-based site models of sequence evolution, we identified ten genes that contain 43 sites with signatures of ancient positive selection across our set of species. None of the sites that have experienced positive selection overlap with sites previously reported to be involved in drug resistance. These results identify sites that likely experienced ancient positive selection in Aspergillus genes involved in resistance to antifungal drugs and suggest that historical selective pressures on these genes likely differ from any current selective pressures imposed by antifungal drugs.
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- 2021
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31. Recomendaciones GEMICOMED/GEIRAS-SEIMC para el manejo de las infecciones y colonizaciones por Candida auris
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Alastruey-Izquierdo, Ana, Asensio, Angel, Besoli, Anna, Calabuig, Eva, Fernández-Ruiz, Mario, Garcia-Vidal, Carolina, Gasch, Oriol, Guinea, Jesús, Martín-Gomez, María Teresa, Paño, Jose Ramón, Ramirez, Paula, Ruiz-Gaitán, Alba, Salavert, Miguel, Tasias, Mariona, Viñuela, Lourdes, and Pemán, Javier
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- 2019
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32. Ibrexafungerp, a Novel Triterpenoid Antifungal in Development for the Treatment of Mold Infections
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David A. Angulo, Barbara Alexander, Riina Rautemaa-Richardson, Ana Alastruey-Izquierdo, Martin Hoenigl, Ashraf S. Ibrahim, Mahmoud A. Ghannoum, Thomas R. King, Nkechi E. Azie, and Thomas J. Walsh
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new antifungal agents ,ibrexafungerp ,molds ,triterpenoid ,invasive fungal infection ,Biology (General) ,QH301-705.5 - Abstract
Molds are ubiquitous in the environment, and immunocompromised patients are at substantial risk of morbidity and mortality due to their underlying disease and the resistance of pathogenic molds to currently recommended antifungal therapies. This combination of weakened-host defense, with limited antifungal treatment options, and the opportunism of environmental molds renders patients at risk and especially vulnerable to invasive mold infections such as Aspergillus and members of the Order Mucorales. Currently, available antifungal drugs such as azoles and echinocandins, as well as combinations of the same, offer some degree of efficacy in the prevention and treatment of invasive mold infections, but their use is often limited by drug resistance mechanisms, toxicity, drug-drug interactions, and the relative paucity of oral treatment options. Clearly, there is a need for agents that are of a new class that provides adequate tissue penetration, can be administered orally, and have broad-spectrum efficacy against fungal infections, including those caused by invasive mold organisms. Ibrexafungerp, an orally bioavailable glucan synthase inhibitor, is the first in a new class of triterpenoid antifungals and shares a similar target to the well-established echinocandins. Ibrexafungerp has a very favorable pharmacokinetic profile for the treatment of fungal infections with excellent tissue penetration in organs targeted by molds, such as the lungs, liver, and skin. Ibrexafungerp has demonstrated in vitro activity against Aspergillus spp. as well as efficacy in animal models of invasive aspergillosis and mucormycosis. Furthermore, ibrexafungerp is approved for use in the USA for the treatment of women with vulvovaginal candidiasis. Ibrexafungerp is currently being evaluated in clinical trials as monotherapy or in combination with other antifungals for treating invasive fungal infections caused by yeasts and molds. Thus, ibrexafungerp offers promise as a new addition to the clinician’s armamentarium against these difficult-to-treat infections.
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- 2022
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33. A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC
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de Hoog, Sybren, primary, Walsh, Thomas J., additional, Ahmed, Sarah A., additional, Alastruey-Izquierdo, Ana, additional, Alexander, Barbara D., additional, Arendrup, Maiken Cavling, additional, Babady, Esther, additional, Bai, Feng-Yan, additional, Balada-Llasat, Joan-Miquel, additional, Borman, Andrew, additional, Chowdhary, Anuradha, additional, Clark, Andrew, additional, Colgrove, Robert C., additional, Cornely, Oliver A., additional, Dingle, Tanis C., additional, Dufresne, Philippe J., additional, Fuller, Jeff, additional, Gangneux, Jean-Pierre, additional, Gibas, Connie, additional, Glasgow, Heather, additional, Gräser, Yvonne, additional, Guillot, Jacques, additional, Groll, Andreas H., additional, Haase, Gerhard, additional, Hanson, Kimberly, additional, Harrington, Amanda, additional, Hawksworth, David L., additional, Hayden, Randall T., additional, Hoenigl, Martin, additional, Hubka, Vit, additional, Johnson, Kristie, additional, Kus, Julianne V., additional, Li, Ruoyu, additional, Meis, Jacques F., additional, Lackner, Michaela, additional, Lanternier, Fanny, additional, Leal Jr., Sixto M., additional, Lee, Francesca, additional, Lockhart, Shawn R., additional, Luethy, Paul, additional, Martin, Isabella, additional, Kwon-Chung, Kyung J., additional, Meyer, Wieland, additional, Nguyen, M. Hong, additional, Ostrosky-Zeichner, Luis, additional, Palavecino, Elizabeth, additional, Pancholi, Preeti, additional, Pappas, Peter G., additional, Procop, Gary W., additional, Redhead, Scott A., additional, Rhoads, Daniel D., additional, Riedel, Stefan, additional, Stevens, Bryan, additional, Sullivan, Kaede Ota, additional, Vergidis, Paschalis, additional, Roilides, Emmanuel, additional, Seyedmousavi, Amir, additional, Tao, Lili, additional, Vicente, Vania A., additional, Vitale, Roxana G., additional, Wang, Qi-Ming, additional, Wengenack, Nancy L., additional, Westblade, Lars, additional, Wiederhold, Nathan, additional, White, Lewis, additional, Wojewoda, Christina M., additional, and Zhang, Sean X., additional
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- 2023
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34. A view of excellence for the future of medical mycology in Clinical Microbiology and Infection
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Walsh, Thomas J., primary and Alastruey-Izquierdo, Ana, additional
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- 2023
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35. Epidemiology and Mortality of Cryptococcal Disease in Guatemala: Two-Year Results of a Cryptococcal Antigen Screening Program
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Narda Medina, Juan Luis Rodriguez-Tudela, Juan Carlos Pérez, Danicela Mercado, Oscar Bonilla, Eduardo Arathoon, and Ana Alastruey-Izquierdo
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cryptococcal antigen ,meningitis ,Guatemala ,Latin America ,PLWHIV ,Biology (General) ,QH301-705.5 - Abstract
Cryptococcal disease is an important opportunistic infection among people living with HIV. The cryptococcal antigen (CrAg) can be detected before the clinical onset of meningitis and its screening is recommended. Here, we evaluated CrAg frequency, and describe the epidemiological characteristics and mortality at 180 days in a cohort of HIV patients from Guatemala. A total of 3457 patients were screened with a CrAg lateral flow assay in serum between January 2017 and December 2018. CrAg positivity was 11.5% in patients with ≤100 CD4/mm3, 8.7% in patients with 3, and 6.3% in patients with 3. In Latin America, we estimated 9.2% CrAg positivity (IC95% 7.9–10.7%) in patients with ≤100 CD4/mm3. Among patients newly diagnosed with HIV, we estimated 4416 incident cases per year in Latin America in those with 3 and 5289 in those with 3. In addition, we calculated the burden in people not on ARV or without viral suppression and found 28,672 cases. CrAg screening should be considered in patients who have a CD4 cell count < 350 cells/mm3. Cryptococcal meningitis was associated with 30.8% mortality in Guatemala. Global access to diagnosis as well as to liposomal amphotericin B and flucytosine is a priority.
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- 2022
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36. Endophthalmitis caused by Fusarium: An emerging problem in patients with corneal trauma. A case series
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Barrios Andrés, José Luis, López-Soria, Leyre Mónica, Alastruey Izquierdo, Ana, Echevarría Ecenarro, Jaime, Feijoó Lera, Raquel, Garrido Fierro, Jesus, Cabrerizo Nuñez, Francisco Javier, and Canut Blasco, Andrés
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- 2018
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37. Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis
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Renato A. C. dos Santos, Jacob L. Steenwyk, Olga Rivero-Menendez, Matthew E. Mead, Lilian P. Silva, Rafael W. Bastos, Ana Alastruey-Izquierdo, Gustavo H. Goldman, and Antonis Rokas
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Aspergillus ,antifungal drug susceptibility ,genomics ,strain heterogeneity ,drug resistance ,cryptic species ,Genetics ,QH426-470 - Abstract
Fungal pathogens are a global threat to human health. For example, fungi from the genus Aspergillus cause a spectrum of diseases collectively known as aspergillosis. Most of the >200,000 life-threatening aspergillosis infections per year worldwide are caused by Aspergillus fumigatus. Recently, molecular typing techniques have revealed that aspergillosis can also be caused by organisms that are phenotypically similar to A. fumigatus but genetically distinct, such as Aspergillus lentulus and Aspergillus fumigatiaffinis. Importantly, some of these so-called cryptic species are thought to exhibit different virulence and drug susceptibility profiles than A. fumigatus, however, our understanding of their biology and pathogenic potential has been stymied by the lack of genome sequences and phenotypic profiling of multiple clinical strains. To fill this gap, we phenotypically characterized the virulence and drug susceptibility of 15 clinical strains of A. fumigatus, A. lentulus, and A. fumigatiaffinis from Spain and sequenced their genomes. We found heterogeneity in drug susceptibility across species and strains. We further found heterogeneity in virulence within each species but no significant differences in the virulence profiles between the three species. Genes known to influence drug susceptibility (cyp51A and fks1) vary in paralog number and sequence among these species and strains and correlate with differences in drug susceptibility. Similarly, genes known to be important for virulence in A. fumigatus showed variability in number of paralogs across strains and across species. Characterization of the genomic similarities and differences of clinical strains of A. lentulus, A. fumigatiaffinis, and A. fumigatus that vary in disease-relevant traits will advance our understanding of the variance in pathogenicity between Aspergillus species and strains that are collectively responsible for the vast majority of aspergillosis infections in humans.
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- 2020
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38. Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses
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Nancy A. Chow, José F. Muñoz, Lalitha Gade, Elizabeth L. Berkow, Xiao Li, Rory M. Welsh, Kaitlin Forsberg, Shawn R. Lockhart, Rodney Adam, Alexandre Alanio, Ana Alastruey-Izquierdo, Sahar Althawadi, Ana Belén Araúz, Ronen Ben-Ami, Amrita Bharat, Belinda Calvo, Marie Desnos-Ollivier, Patricia Escandón, Dianne Gardam, Revathi Gunturu, Christopher H. Heath, Oliver Kurzai, Ronny Martin, Anastasia P. Litvintseva, and Christina A. Cuomo
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Candida auris ,antifungal resistance ,emerging species ,genome analysis ,population genetics ,Microbiology ,QR1-502 - Abstract
ABSTRACT Candida auris has emerged globally as a multidrug-resistant yeast that can spread via nosocomial transmission. An initial phylogenetic study of isolates from Japan, India, Pakistan, South Africa, and Venezuela revealed four populations (clades I, II, III, and IV) corresponding to these geographic regions. Since this description, C. auris has been reported in more than 30 additional countries. To trace this global emergence, we compared the genomes of 304 C. auris isolates from 19 countries on six continents. We found that four predominant clades persist across wide geographic locations. We observed phylogeographic mixing in most clades; clade IV, with isolates mainly from South America, demonstrated the strongest phylogeographic substructure. C. auris isolates from two clades with opposite mating types were detected contemporaneously in a single health care facility in Kenya. We estimated a Bayesian molecular clock phylogeny and dated the origin of each clade within the last 360 years; outbreak-causing clusters from clades I, III, and IV originated 36 to 38 years ago. We observed high rates of antifungal resistance in clade I, including four isolates resistant to all three major classes of antifungals. Mutations that contribute to resistance varied between the clades, with Y132F in ERG11 as the most widespread mutation associated with azole resistance and S639P in FKS1 for echinocandin resistance. Copy number variants in ERG11 predominantly appeared in clade III and were associated with fluconazole resistance. These results provide a global context for the phylogeography, population structure, and mechanisms associated with antifungal resistance in C. auris. IMPORTANCE In less than a decade, C. auris has emerged in health care settings worldwide; this species is capable of colonizing skin and causing outbreaks of invasive candidiasis. In contrast to other Candida species, C. auris is unique in its ability to spread via nosocomial transmission and its high rates of drug resistance. As part of the public health response, whole-genome sequencing has played a major role in characterizing transmission dynamics and detecting new C. auris introductions. Through a global collaboration, we assessed genome evolution of isolates of C. auris from 19 countries. Here, we described estimated timing of the expansion of each C. auris clade and of fluconazole resistance, characterized discrete phylogeographic population structure of each clade, and compared genome data to sensitivity measurements to describe how antifungal resistance mechanisms vary across the population. These efforts are critical for a sustained, robust public health response that effectively utilizes molecular epidemiology.
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- 2020
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39. Incidence of Histoplasmosis in a Cohort of People with HIV: From Estimations to Reality
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Narda Medina, Juan Luis Rodriguez-Tudela, Luis Aguirre, Luis R. Salazar, Osmar Gamboa, Oscar Bonilla, Juan C. Pérez, Eduardo Arathoon, David W. Denning, and Ana Alastruey-Izquierdo
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histoplasmosis ,antigen ,HIV ,opportunistic infections ,Biology (General) ,QH301-705.5 - Abstract
Among people with HIV, histoplasmosis represents an important cause of mortality. Previous studies provided estimates of the disease incidence. Here, we compared those estimates with the results obtained from a screening program implemented in Guatemala, which included histoplasmosis detection for people with HIV. To compare the results of this program with previous estimations, a literature search was performed and reports concerning histoplasmosis incidence were analyzed. The screening program enrolled 6366 patients. The overall histoplasmosis incidence in the screening program was 7.4%, which was almost double that estimated in previous studies. From 2017 to 2019, the screening program showed an upward trend in histoplasmosis cases from 6.5% to 8.8%. Histoplasmosis overall mortality among those who were newly HIV diagnosed showed a decrease at 180 days from 32.8% in 2017 to 21.2% in 2019. The screening approach using rapid diagnostic assays detects histoplasmosis cases more quickly, allowing a specific treatment to be administered, which decreases the mortality of the disease. Therefore, the use of these new techniques, especially in endemic areas of histoplasmosis, must be implemented.
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- 2021
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40. Comparative performance of the laboratory assays used by a Diagnostic Laboratory Hub for opportunistic infections in people living with HIV
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Medina, Narda, Alastruey-Izquierdo, Ana, Mercado, Danicela, Bonilla, Oscar, Pérez, Juan C., Aguirre, Luis, Samayoa, Blanca, Arathoon, Eduardo, Denning, David W., and Rodriguez-Tudela, Juan Luis
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- 2020
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41. Breakthrough invasive fungal infection among patients with haematologic malignancies: A national, prospective, and multicentre study
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Pedro Puerta-Alcalde, Patricia Monzó-Gallo, Manuela Aguilar-Guisado, Juan Carlos Ramos, Júlia Laporte-Amargós, Marina Machado, Pilar Martin-Davila, Mireia Franch-Sarto, Isabel Sánchez-Romero, Jon Badiola, Lucia Gómez, Isabel Ruiz-Camps, Lucrecia Yáñez, Lourdes Vázquez, Mariana Chumbita, Francesc Marco, Alex Soriano, Pedro González, Ana Fernández-Cruz, Montserrat Batlle, Jesús Fortún, Jesús Guinea, Carlota Gudiol, Julio García, Maite Ruiz Pérez de Pipaón, Ana Alastruey-Izquierdo, Carolina Garcia-Vidal, Gilead Sciences (Spain), Instituto de Salud Carlos III, and Unión Europea. Fondo Europeo de Desarrollo Regional (FEDER/ERDF)
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Microbiology (medical) ,Antifungal Agents ,Fungi ,Candidemia ,Antifungal ,Breakthrough ,Infectious Diseases ,Fungal disease ,Invasive fungal infection ,Aspergillus ,Hematologic Neoplasms ,Humans ,Prospective Studies ,Mortality ,Invasive Fungal Infections - Abstract
Objectives: We describe the current epidemiology, causes, and outcomes of breakthrough invasive fungal infections (BtIFI) in patients with haematologic malignancies. Methods: BtIFI in patients with ≥ 7 days of prior antifungals were prospectively diagnosed (36 months across 13 Spanish hospitals) according to revised EORTC/MSG definitions. Results: 121 episodes of BtIFI were documented, of which 41 (33.9%) were proven; 53 (43.8%), probable; and 27 (22.3%), possible. The most frequent prior antifungals included posaconazole (32.2%), echinocandins (28.9%) and fluconazole (24.8%)-mainly for primary prophylaxis (81%). The most common haematologic malignancy was acute leukaemia (64.5%), and 59 (48.8%) patients had undergone a hematopoietic stem-cell transplantation. Invasive aspergillosis, principally caused by non-fumigatus Aspergillus, was the most frequent BtIFI with 55 (45.5%) episodes recorded, followed by candidemia (23, 19%), mucormycosis (7, 5.8%), other moulds (6, 5%) and other yeasts (5, 4.1%). Azole resistance/non-susceptibility was commonly found. Prior antifungal therapy widely determined BtIFI epidemiology. The most common cause of BtIFI in proven and probable cases was the lack of activity of the prior antifungal (63, 67.0%). At diagnosis, antifungal therapy was mostly changed (90.9%), mainly to liposomal amphotericin-B (48.8%). Overall, 100-day mortality was 47.1%; BtIFI was either the cause or an essential contributing factor to death in 61.4% of cases. Conclusions: BtIFI are mainly caused by non-fumigatus Aspergillus, non-albicans Candida, Mucorales and other rare species of mould and yeast. Prior antifungals determine the epidemiology of BtIFI. The exceedingly high mortality due to BtIFI warrants an aggressive diagnostic approach and early initiation of broad-spectrum antifungals different than those previously used. This work was funded by a grant from Gilead Sciences. P.P.-A. (JR20/00012, PI21/00498, and ICI21/00103) and C.G.-V. (FIS PI21/01640 and ICI21/00103) have received research grants funded by Instituto de Salud Carlos III (ISCIII) and co-funded by the European Union. The funders had neither a specific role in study design or collection of data, nor in writing of the paper or decision to submit. Sí
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- 2023
42. Guideline adherence and survival of patients with candidaemia in Europe: results from the ECMM Candida III multinational European observational cohort study
- Author
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Martin Hoenigl, Jon Salmanton-García, Matthias Egger, Jean-Pierre Gangneux, Tihana Bicanic, Sevtap Arikan-Akdagli, Ana Alastruey-Izquierdo, Nikolai Klimko, Aleksandra Barac, Volkan Özenci, Eelco F J Meijer, Nina Khanna, Matteo Bassetti, Riina Rautemaa-Richardson, Katrien Lagrou, Kai-Manuel Adam, Emin Halis Akalin, Murat Akova, Valentina Arsic Arsenijevic, Avinash Aujayeb, Ola Blennow, Stéphane Bretagne, François Danion, Blandine Denis, Nick Alexander de Jonge, Guillaume Desoubeaux, Lubos Drgona, Nurettin Erben, Andrea Gori, Julio García Rodríguez, Carolina Garcia-Vidal, Daniele Roberto Giacobbe, Anna L Goodman, Petr Hamal, Helena Hammarström, Cristina Toscano, Fanny Lanternier, Cornelia Lass-Flörl, Deborah E A Lockhart, Thomas Longval, Laura Loughlin, Tadeja Matos, Malgorzata Mikulska, Manjusha Narayanan, Sonia Martín-Pérez, Juergen Prattes, Benedict Rogers, Laman Rahimli, Maite Ruiz, Emmanuel Roilides, Michael Samarkos, Ulrike Scharmann, Uluhan Sili, Oguz Resat Sipahi, Alena Sivakova, Joerg Steinmann, Janina Trauth, Ozge Turhan, Jens Van Praet, Antonio Vena, P Lewis White, Birgit Willinger, Anna Maria Tortorano, Maiken C Arendrup, Philipp Koehler, Oliver A Cornely, Mario Tumbarello, Alida Fe Talento, Alba C Ruiz, Zdenek Racil, Igor Stoma, Maria Calbacho, Eric Van Wijngaerden, Júlia Henriques, Harriett Jordan, Valentina Ferroni, Ozlem Koyuncu Ozyurt, Christopher Milacek, Robert Krause, Christoph Zurl, Matthijs Backx, Ang Li, Raphael Seufert, Rok Tomazin, Yael Blankenheim, Julio Dávila-Valls, Paloma García-Clemente, Tomas Freiberger, Jochem Buil, Jacques F Meis, Deniz Akyol, Hélène Guegan, Clare Logan, Medical University of Graz, University of Cologne, Institut de recherche en santé, environnement et travail (Irset), Université d'Angers (UA)-Université de Rennes (UR)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), CHU Pontchaillou [Rennes], Scynexis, Hoenigl M., Salmanton-García J., Egger M., Gangneux J., Bicanic T., Arikan-Akdagli S., Alastruey-Izquierdo A., Klimko N., Barac A., Özenci V., et al., and Hematology
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MESH: Humans ,İmmünoloji ,Temel Bilimler ,Settore MED/42 - Igiene Generale e Applicata ,Medizin ,Life Sciences ,Life Sciences (LIFE) ,MESH: Adult ,INFECTIOUS DISEASES ,Sağlık Bilimleri ,MESH: Antifungal Agents ,MESH: Candidemia ,IMMUNOLOGY ,Bulaşıcı hastalıklar ,Yaşam Bilimleri (LIFE) ,BULAŞICI HASTALIKLAR ,MESH: Candida ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Yaşam Bilimleri ,Health Sciences ,MESH: Guideline Adherence ,MESH: Europe ,Natural Sciences ,MESH: Cohort Studies - Abstract
Background: The European Confederation of Medical Mycology (ECMM) collected data on epidemiology, risk factors, treatment, and outcomes of patients with culture-proven candidaemia across Europe to assess how adherence to guideline recommendations is associated with outcomes. Methods: In this observational cohort study, 64 participating hospitals located in 20 European countries, with the number of eligible hospitals per country determined by population size, included the first ten consecutive adults with culture-proven candidaemia after July 1, 2018, and entered data into the ECMM Candida Registry (FungiScope CandiReg). We assessed ECMM Quality of Clinical Candidaemia Management (EQUAL Candida) scores reflecting adherence to recommendations of the European Society of Clinical Microbiology and Infectious Diseases and the Infectious Diseases Society of America guidelines. Findings: 632 patients with candidaemia were included from 64 institutions. Overall 90-day mortality was 43% (265/617), and increasing age, intensive care unit admission, point increases in the Charlson comorbidity index score, and Candida tropicalis as causative pathogen were independent baseline predictors of mortality in Cox regression analysis. EQUAL Candida score remained an independent predictor of mortality in the multivariable Cox regression analyses after adjusting for the baseline predictors, even after restricting the analysis to patients who survived for more than 7 days after diagnosis (adjusted hazard ratio 1·08 [95% CI 1·04–1·11; p
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- 2023
43. Azole resistance survey on clinical Aspergillus fumigatus isolates in Spain
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Sánchez-Yebra, Waldo, Sánchez-Gómez, Juan, Lozano, Inmaculada, Marfil, Eduardo, Muñoz de la Rosa, Montserrat, García, Rocío Tejero, Cobo, Fernando, Castro, Carmen, López, Concepción, Rezusta, Antonio, Peláez, Teresa, Castelló-Abietar, Cristian, Costales, Isabel, Serra, Julia Lozano, Jiménez, Rosa, Echeverría, Cristina Labayru, Pérez, Cristina Losa, Megías-Lobón, Gregoria, Lorenzo, Belén, Sánchez-Reus, Ferrán, Ayats, Josefina, Martín, María Teresa, Vidal, Inmaculada, Sánchez-Hellín, Victoria, Ibáñez, Elisa, Pemán, Javier, Fajardo, Miguel, Pazos, Carmen, Rodríguez-Mayo, María, Pérez-Ayala, Ana, Gómez, Elia, Guinea, Jesús, Escribano, Pilar, Serrano, Julia, Reigadas, Elena, Rodríguez, Belén, Zvezdanova, Estreya, Díaz-García, Judith, Gómez-Núñez, Ana, Leiva, José González, Machado, Marina, Muñoz, Patricia, Sánchez-Romero, Isabel, García-Rodríguez, Julio, Luis del Pozo, José, Vallejo, Manuel Rubio, Ruiz de Alegría-Puig, Carlos, López-Soria, Leyre, Marimón, José María, Vicente, Diego, Fernández-Torres, Marina, Hernáez-Crespo, Silvia, Rodríguez-Sánchez, Belén, Martín-Gómez, María Teresa, Ibáñez-Martínez, Elisa, García-Gómez de la Pedrosa, Elia, Tejero-García, Rocío, Labayru-Echeverría, Cristina, and Alastruey-Izquierdo, Ana
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- 2021
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44. The challenges of the genome-based identification of antifungal resistance in the clinical routine
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Alastruey-Izquierdo, Ana, primary and Martín-Galiano, Antonio J., additional
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- 2023
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45. Comparing genomic variant identification protocols for Candida auris
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Li, Xiao, primary, Muñoz, José F., additional, Gade, Lalitha, additional, Argimon, Silvia, additional, Bougnoux, Marie-Elisabeth, additional, Bowers, Jolene R., additional, Chow, Nancy A., additional, Cuesta, Isabel, additional, Farrer, Rhys A., additional, Maufrais, Corinne, additional, Monroy-Nieto, Juan, additional, Pradhan, Dibyabhaba, additional, Uehling, Jessie, additional, Vu, Duong, additional, Yeats, Corin A., additional, Aanensen, David M., additional, d’Enfert, Christophe, additional, Engelthaler, David M., additional, Eyre, David W., additional, Fisher, Matthew C., additional, Hagen, Ferry, additional, Meyer, Wieland, additional, Singh, Gagandeep, additional, Alastruey-Izquierdo, Ana, additional, Litvintseva, Anastasia P., additional, and Cuomo, Christina A., additional
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- 2023
- Full Text
- View/download PDF
46. Guideline adherence and survival of patients with candidaemia in Europe: results from the ECMM Candida III multinational European observational cohort study
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Hoenigl, M., Salmanton-García, J., Egger, M., Gangneux, J.P., Bicanic, T., Arikan-Akdagli, S., Alastruey-Izquierdo, A., Klimko, N., Barac, A., Özenci, V., Meijer, E.F.J., Khanna, N., Bassetti, M., Rautemaa-Richardson, R., Lagrou, K., Adam, K.M., Akalin, E.H., Akova, M., Arsenijevic, V. Arsic, Aujayeb, A., Blennow, O., Bretagne, S., Danion, F., Denis, B., Jonge, N.A. de, Desoubeaux, G., Drgona, L., Erben, N., Gori, A., Rodríguez, J. García, Garcia-Vidal, C., Giacobbe, D.R., Goodman, A.L., Hamal, P., Hammarström, H., Toscano, C., Lanternier, F., Lass-Flörl, C., Lockhart, D.E.A., Longval, T., Loughlin, L., Matos, T., Mikulska, M., Narayanan, M., Martín-Pérez, S., Prattes, J., Rogers, B., Rahimli, L., Ruiz, M., Roilides, E., Samarkos, M., Scharmann, U., Sili, U., Sipahi, O.R., Sivakova, A., Steinmann, J., Trauth, J., Turhan, O., Praet, J. Van, Vena, A., White, P.L., Willinger, B., Tortorano, A.M., Arendrup, M.C., Koehler, P., Cornely, O.A., Hoenigl, M., Salmanton-García, J., Egger, M., Gangneux, J.P., Bicanic, T., Arikan-Akdagli, S., Alastruey-Izquierdo, A., Klimko, N., Barac, A., Özenci, V., Meijer, E.F.J., Khanna, N., Bassetti, M., Rautemaa-Richardson, R., Lagrou, K., Adam, K.M., Akalin, E.H., Akova, M., Arsenijevic, V. Arsic, Aujayeb, A., Blennow, O., Bretagne, S., Danion, F., Denis, B., Jonge, N.A. de, Desoubeaux, G., Drgona, L., Erben, N., Gori, A., Rodríguez, J. García, Garcia-Vidal, C., Giacobbe, D.R., Goodman, A.L., Hamal, P., Hammarström, H., Toscano, C., Lanternier, F., Lass-Flörl, C., Lockhart, D.E.A., Longval, T., Loughlin, L., Matos, T., Mikulska, M., Narayanan, M., Martín-Pérez, S., Prattes, J., Rogers, B., Rahimli, L., Ruiz, M., Roilides, E., Samarkos, M., Scharmann, U., Sili, U., Sipahi, O.R., Sivakova, A., Steinmann, J., Trauth, J., Turhan, O., Praet, J. Van, Vena, A., White, P.L., Willinger, B., Tortorano, A.M., Arendrup, M.C., Koehler, P., and Cornely, O.A.
- Abstract
Item does not contain fulltext, BACKGROUND: The European Confederation of Medical Mycology (ECMM) collected data on epidemiology, risk factors, treatment, and outcomes of patients with culture-proven candidaemia across Europe to assess how adherence to guideline recommendations is associated with outcomes. METHODS: In this observational cohort study, 64 participating hospitals located in 20 European countries, with the number of eligible hospitals per country determined by population size, included the first ten consecutive adults with culture-proven candidaemia after July 1, 2018, and entered data into the ECMM Candida Registry (FungiScope CandiReg). We assessed ECMM Quality of Clinical Candidaemia Management (EQUAL Candida) scores reflecting adherence to recommendations of the European Society of Clinical Microbiology and Infectious Diseases and the Infectious Diseases Society of America guidelines. FINDINGS: 632 patients with candidaemia were included from 64 institutions. Overall 90-day mortality was 43% (265/617), and increasing age, intensive care unit admission, point increases in the Charlson comorbidity index score, and Candida tropicalis as causative pathogen were independent baseline predictors of mortality in Cox regression analysis. EQUAL Candida score remained an independent predictor of mortality in the multivariable Cox regression analyses after adjusting for the baseline predictors, even after restricting the analysis to patients who survived for more than 7 days after diagnosis (adjusted hazard ratio 1·08 [95% CI 1·04-1·11; p<0·0001] in patients with a central venous catheter and 1·09 [1·05-1·13; p<0·0001] in those without one, per one score point decrease). Median duration of hospital stay was 15 days (IQR 4-30) after diagnosis of candidaemia and was extended specifically for completion of parenteral therapy in 100 (16%) of 621 patients. Initial echinocandin treatment was associated with lower overall mortality and longer duration of hospital stay among survivors than treatment
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- 2023
47. A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC
- Author
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de Hoog, Sybren, Walsh, Thomas J, Ahmed, Sarah A, Alastruey-Izquierdo, Ana, Alexander, Barbara D, Arendrup, Maiken Cavling, Babady, Esther, Bai, Feng-Yan, Balada-Llasat, Joan-Miquel, Borman, Andrew, Chowdhary, Anuradha, Clark, Andrew, Colgrove, Robert C, Cornely, Oliver A, Dingle, Tanis C, Dufresne, Philippe J, Fuller, Jeff, Gangneux, Jean-Pierre, Gibas, Connie, Glasgow, Heather, Gräser, Yvonne, Guillot, Jacques, Groll, Andreas H, Haase, Gerhard, Hanson, Kimberly, Harrington, Amanda, Hawksworth, David L, Hayden, Randall T, Hoenigl, Martin, Hubka, Vit, Johnson, Kristie, Kus, Julianne V, Li, Ruoyu, Meis, Jacques F, Lackner, Michaela, Lanternier, Fanny, Leal, Sixto M, Lee, Francesca, Lockhart, Shawn R, Luethy, Paul, Martin, Isabella, Kwon-Chung, Kyung J, Meyer, Wieland, Nguyen, M Hong, Ostrosky-Zeichner, Luis, Palavecino, Elizabeth, Pancholi, Preeti, Pappas, Peter G, Procop, Gary W, Redhead, Scott A, Rhoads, Daniel D, Riedel, Stefan, Stevens, Bryan, Sullivan, Kaede Ota, Vergidis, Paschalis, Roilides, Emmanuel, Seyedmousavi, Amir, Tao, Lili, Vicente, Vania A, Vitale, Roxana G, Wang, Qi-Ming, Wengenack, Nancy L, Westblade, Lars, Wiederhold, Nathan, White, Lewis, Wojewoda, Christina M, Zhang, Sean X, de Hoog, Sybren, Walsh, Thomas J, Ahmed, Sarah A, Alastruey-Izquierdo, Ana, Alexander, Barbara D, Arendrup, Maiken Cavling, Babady, Esther, Bai, Feng-Yan, Balada-Llasat, Joan-Miquel, Borman, Andrew, Chowdhary, Anuradha, Clark, Andrew, Colgrove, Robert C, Cornely, Oliver A, Dingle, Tanis C, Dufresne, Philippe J, Fuller, Jeff, Gangneux, Jean-Pierre, Gibas, Connie, Glasgow, Heather, Gräser, Yvonne, Guillot, Jacques, Groll, Andreas H, Haase, Gerhard, Hanson, Kimberly, Harrington, Amanda, Hawksworth, David L, Hayden, Randall T, Hoenigl, Martin, Hubka, Vit, Johnson, Kristie, Kus, Julianne V, Li, Ruoyu, Meis, Jacques F, Lackner, Michaela, Lanternier, Fanny, Leal, Sixto M, Lee, Francesca, Lockhart, Shawn R, Luethy, Paul, Martin, Isabella, Kwon-Chung, Kyung J, Meyer, Wieland, Nguyen, M Hong, Ostrosky-Zeichner, Luis, Palavecino, Elizabeth, Pancholi, Preeti, Pappas, Peter G, Procop, Gary W, Redhead, Scott A, Rhoads, Daniel D, Riedel, Stefan, Stevens, Bryan, Sullivan, Kaede Ota, Vergidis, Paschalis, Roilides, Emmanuel, Seyedmousavi, Amir, Tao, Lili, Vicente, Vania A, Vitale, Roxana G, Wang, Qi-Ming, Wengenack, Nancy L, Westblade, Lars, Wiederhold, Nathan, White, Lewis, Wojewoda, Christina M, and Zhang, Sean X
- Abstract
The rapid pace of name changes of medically important fungi is creating challenges for clinical laboratories and clinicians involved in patient care. We describe two sources of name change which have different drivers, at the species versus the genus level. Some suggestions are made here to reduce the number of name changes. We urge taxonomists to provide diagnostic markers of taxonomic novelties. Given the instability of phylogenetic trees due to variable taxon sampling, we advocate to maintain genera at the largest possible size. Reporting of identified species in complexes or series should where possible comprise both the name of the overarching species and that of the molecular sibling, often cryptic species. Because the use of different names for the same species will be unavoidable for many years to come, an open access online database of the names of all medically important fungi, with proper nomenclatural designation and synonymy, is essential. We further recommend that while taxonomic discovery continues, the adaptation of new name changes by clinical laboratories and clinicians be reviewed routinely by a standing committee for validation and stability over time, with reference to an open access database, wherein reasons for changes are listed in a transparent way.
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- 2023
48. Comparing genomic variant identification protocols for Candida auris
- Author
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Li, Xiao, Muñoz, José F, Gade, Lalitha, Argimon, Silvia, Bougnoux, Marie-Elisabeth, Bowers, Jolene R, Chow, Nancy A, Cuesta, Isabel, Farrer, Rhys A, Maufrais, Corinne, Monroy-Nieto, Juan, Pradhan, Dibyabhaba, Uehling, Jessie, Vu, Duong, Yeats, Corin A, Aanensen, David M, d'Enfert, Christophe, Engelthaler, David M, Eyre, David W, Fisher, Matthew C, Hagen, Ferry, Meyer, Wieland, Singh, Gagandeep, Alastruey-Izquierdo, Ana, Litvintseva, Anastasia P, Cuomo, Christina A, Li, Xiao, Muñoz, José F, Gade, Lalitha, Argimon, Silvia, Bougnoux, Marie-Elisabeth, Bowers, Jolene R, Chow, Nancy A, Cuesta, Isabel, Farrer, Rhys A, Maufrais, Corinne, Monroy-Nieto, Juan, Pradhan, Dibyabhaba, Uehling, Jessie, Vu, Duong, Yeats, Corin A, Aanensen, David M, d'Enfert, Christophe, Engelthaler, David M, Eyre, David W, Fisher, Matthew C, Hagen, Ferry, Meyer, Wieland, Singh, Gagandeep, Alastruey-Izquierdo, Ana, Litvintseva, Anastasia P, and Cuomo, Christina A
- Abstract
Genomic analyses are widely applied to epidemiological, population genetic and experimental studies of pathogenic fungi. A wide range of methods are employed to carry out these analyses, typically without including controls that gauge the accuracy of variant prediction. The importance of tracking outbreaks at a global scale has raised the urgency of establishing high-accuracy pipelines that generate consistent results between research groups. To evaluate currently employed methods for whole-genome variant detection and elaborate best practices for fungal pathogens, we compared how 14 independent variant calling pipelines performed across 35 Candida auris isolates from 4 distinct clades and evaluated the performance of variant calling, single-nucleotide polymorphism (SNP) counts and phylogenetic inference results. Although these pipelines used different variant callers and filtering criteria, we found high overall agreement of SNPs from each pipeline. This concordance correlated with site quality, as SNPs discovered by a few pipelines tended to show lower mapping quality scores and depth of coverage than those recovered by all pipelines. We observed that the major differences between pipelines were due to variation in read trimming strategies, SNP calling methods and parameters, and downstream filtration criteria. We calculated specificity and sensitivity for each pipeline by aligning three isolates with chromosomal level assemblies and found that the GATK-based pipelines were well balanced between these metrics. Selection of trimming methods had a greater impact on SAMtools-based pipelines than those using GATK. Phylogenetic trees inferred by each pipeline showed high consistency at the clade level, but there was more variability between isolates from a single outbreak, with pipelines that used more stringent cutoffs having lower resolution. This project generated two truth datasets useful for routine benchmarking of C. auris variant calling, a consensus VCF of g
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- 2023
49. Guideline adherence and survival of patients with candidaemia in Europe: results from the ECMM Candida III multinational European observational cohort study
- Author
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Scynexis, Hoenigl, Martin, Salmanton-García, Jon, Egger, Matthias, Gangneux, Jean-Pierre, Bicanic, Tihana, Arikan-Akdagli, Sevtap, Alastruey-Izquierdo, Ana, Klimko, Nikolai, Barac, Aleksandra, Özenci, Volkan, Meijer, Eelco F. J., Khanna, Nina, Bassetti, Matteo, Rautemaa-Richardson, Riina, Lagrou, Katrien, Adam, Kai-Manuel, Akalin, Emin Halis, Akova, Murat, Arsic-Arsenijevic, Valentina, Aujayeb, Avinash, Blennow, Ola, Bretagne, Stéphane, Danion, François, Denis, Blandine, Jonge, Nick de, Desoubeaux, Guillaume, Drgona, Lubos, Erben, Nurettin, Gori, Andrea, García-Rodríguez, Julio, García-Vidal, Carolina, Giacobbe, Daniele Roberto, Goodman, Anna L., Hamal, Petr, Hammarström, Helena, Toscano, Cristina, Lanternier, Fanny, Lass-Flörl, Cornelia, Lockhart, Deborah E. A., Longval, Thomas, Loughlin, Laura, Matos, Tadeja, Mikulska, Malgorzata, Narayanan, Manjusha, Martín-Pérez, Sonia, Prattes, Juergen, Rogers, Benedict, Rahimli, Laman, Ruiz, Maite, Roilides, Emmanuel, Samarkos, Michael, Scharmann, Ulrike, Sili, Uluhan, Sipahi, Oguz Resat, Sivakova, Alena, Steinmann, Joerg, Trauth, Janina, Turhan, Ozge, Praet, Jens van, Vena, Antonio, White, P. Lewis, Willinger, Birgit, Tortorano, Anna Maria, Arendrup, Maiken C., Koehler, Philipp, Cornely, Oliver A., ECMM Candida III Study Group, Scynexis, Hoenigl, Martin, Salmanton-García, Jon, Egger, Matthias, Gangneux, Jean-Pierre, Bicanic, Tihana, Arikan-Akdagli, Sevtap, Alastruey-Izquierdo, Ana, Klimko, Nikolai, Barac, Aleksandra, Özenci, Volkan, Meijer, Eelco F. J., Khanna, Nina, Bassetti, Matteo, Rautemaa-Richardson, Riina, Lagrou, Katrien, Adam, Kai-Manuel, Akalin, Emin Halis, Akova, Murat, Arsic-Arsenijevic, Valentina, Aujayeb, Avinash, Blennow, Ola, Bretagne, Stéphane, Danion, François, Denis, Blandine, Jonge, Nick de, Desoubeaux, Guillaume, Drgona, Lubos, Erben, Nurettin, Gori, Andrea, García-Rodríguez, Julio, García-Vidal, Carolina, Giacobbe, Daniele Roberto, Goodman, Anna L., Hamal, Petr, Hammarström, Helena, Toscano, Cristina, Lanternier, Fanny, Lass-Flörl, Cornelia, Lockhart, Deborah E. A., Longval, Thomas, Loughlin, Laura, Matos, Tadeja, Mikulska, Malgorzata, Narayanan, Manjusha, Martín-Pérez, Sonia, Prattes, Juergen, Rogers, Benedict, Rahimli, Laman, Ruiz, Maite, Roilides, Emmanuel, Samarkos, Michael, Scharmann, Ulrike, Sili, Uluhan, Sipahi, Oguz Resat, Sivakova, Alena, Steinmann, Joerg, Trauth, Janina, Turhan, Ozge, Praet, Jens van, Vena, Antonio, White, P. Lewis, Willinger, Birgit, Tortorano, Anna Maria, Arendrup, Maiken C., Koehler, Philipp, Cornely, Oliver A., and ECMM Candida III Study Group
- Abstract
[Background] The European Confederation of Medical Mycology (ECMM) collected data on epidemiology, risk factors, treatment, and outcomes of patients with culture-proven candidaemia across Europe to assess how adherence to guideline recommendations is associated with outcomes., [Methods] In this observational cohort study, 64 participating hospitals located in 20 European countries, with the number of eligible hospitals per country determined by population size, included the first ten consecutive adults with culture-proven candidaemia after July 1, 2018, and entered data into the ECMM Candida Registry (FungiScope CandiReg). We assessed ECMM Quality of Clinical Candidaemia Management (EQUAL Candida) scores reflecting adherence to recommendations of the European Society of Clinical Microbiology and Infectious Diseases and the Infectious Diseases Society of America guidelines., [Findings] 632 patients with candidaemia were included from 64 institutions. Overall 90-day mortality was 43% (265/617), and increasing age, intensive care unit admission, point increases in the Charlson comorbidity index score, and Candida tropicalis as causative pathogen were independent baseline predictors of mortality in Cox regression analysis. EQUAL Candida score remained an independent predictor of mortality in the multivariable Cox regression analyses after adjusting for the baseline predictors, even after restricting the analysis to patients who survived for more than 7 days after diagnosis (adjusted hazard ratio 1·08 [95% CI 1·04–1·11; p<0·0001] in patients with a central venous catheter and 1·09 [1·05–1·13; p<0·0001] in those without one, per one score point decrease). Median duration of hospital stay was 15 days (IQR 4–30) after diagnosis of candidaemia and was extended specifically for completion of parenteral therapy in 100 (16%) of 621 patients. Initial echinocandin treatment was associated with lower overall mortality and longer duration of hospital stay among survivors than treatment with other antifungals., [Interpretation] Although overall mortality in patients with candidaemia was high, our study indicates that adherence to clinical guideline recommendations, reflected by higher EQUAL Candida scores, might increase survival. New antifungals, with similar activity as current echinocandins but with longer half-lives or oral bioavailability, are needed to reduce duration of hospital stay.
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- 2023
50. Breakthrough invasive fungal infection among patients with haematologic malignancies: A national, prospective, and multicentre study
- Author
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Gilead Sciences, Instituto de Salud Carlos III, European Commission, Puerta-Alcalde, Pedro, Monzó-Gallo, Patricia, Aguilar Guisado, Manuela, Ramos, Juan Carlos, Laporte-Amargós, Júlia, Machado, Marina, Martín-Dávila, Pilar, Franch-Sarto, Mireia, Sánchez-Romero, Isabel, Badiola, Jon, Gómez, Lucia, Ruiz-Camps, Isabel, Yáñez, Lucrecia, Vázquez, Lourdes, Chumbita, Mariana, Marco, Francesc, Soriano, Álex, González, Pedro, Fernández-Cruz, Ana, Batlle, Montserrat, Fortún, Jesús, Guinea, Jesús, Gudiol, Carlota, García, Julio, Ruiz Pérez de Pipaón, Maite, Alastruey-Izquierdo, Ana, García-Vidal, Carolina, Gilead Sciences, Instituto de Salud Carlos III, European Commission, Puerta-Alcalde, Pedro, Monzó-Gallo, Patricia, Aguilar Guisado, Manuela, Ramos, Juan Carlos, Laporte-Amargós, Júlia, Machado, Marina, Martín-Dávila, Pilar, Franch-Sarto, Mireia, Sánchez-Romero, Isabel, Badiola, Jon, Gómez, Lucia, Ruiz-Camps, Isabel, Yáñez, Lucrecia, Vázquez, Lourdes, Chumbita, Mariana, Marco, Francesc, Soriano, Álex, González, Pedro, Fernández-Cruz, Ana, Batlle, Montserrat, Fortún, Jesús, Guinea, Jesús, Gudiol, Carlota, García, Julio, Ruiz Pérez de Pipaón, Maite, Alastruey-Izquierdo, Ana, and García-Vidal, Carolina
- Abstract
[Objectives] We describe the current epidemiology, causes, and outcomes of breakthrough invasive fungal infections (BtIFI) in patients with haematologic malignancies., [Methods] BtIFI in patients with ≥ 7 days of prior antifungals were prospectively diagnosed (36 months across 13 Spanish hospitals) according to revised EORTC/MSG definitions., [Results] 121 episodes of BtIFI were documented, of which 41 (33.9%) were proven; 53 (43.8%), probable; and 27 (22.3%), possible. The most frequent prior antifungals included posaconazole (32.2%), echinocandins (28.9%) and fluconazole (24.8%)—mainly for primary prophylaxis (81%). The most common haematologic malignancy was acute leukaemia (64.5%), and 59 (48.8%) patients had undergone a hematopoietic stem-cell transplantation. Invasive aspergillosis, principally caused by non-fumigatus Aspergillus, was the most frequent BtIFI with 55 (45.5%) episodes recorded, followed by candidemia (23, 19%), mucormycosis (7, 5.8%), other moulds (6, 5%) and other yeasts (5, 4.1%). Azole resistance/non-susceptibility was commonly found. Prior antifungal therapy widely determined BtIFI epidemiology. The most common cause of BtIFI in proven and probable cases was the lack of activity of the prior antifungal (63, 67.0%). At diagnosis, antifungal therapy was mostly changed (90.9%), mainly to liposomal amphotericin-B (48.8%). Overall, 100-day mortality was 47.1%; BtIFI was either the cause or an essential contributing factor to death in 61.4% of cases., [Conclusions] BtIFI are mainly caused by non-fumigatus Aspergillus, non-albicans Candida, Mucorales and other rare species of mould and yeast. Prior antifungals determine the epidemiology of BtIFI. The exceedingly high mortality due to BtIFI warrants an aggressive diagnostic approach and early initiation of broad-spectrum antifungals different than those previously used.
- Published
- 2023
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