Search

The animal gut microbiome acts as a crucial link between the host and its environment, playing a vital role in digestion, metabolism, physiology, and fitness. Using 16S rRNA metabarcoding, we investigated the effect of altitude on the microbiome composition of Anatolian Blind Mole Rats (Nannospalax xanthodon) across six locations and three altitudinal groups. We also factored in the host diet, as well as host microsatellite genotypes and thyroid hormone levels. The altitude had a major effect on microbiome composition, with notable differences in the relative abundance of several bacterial taxa across elevations. Contrary to prior research, we found no significant difference in strictly anaerobic bacteria abundance among altitudinal groups, though facultatively anaerobic bacteria were more prevalent at higher altitudes. Microbiome alpha diversity peaked at mid-altitude, comprising elements from both low and high elevations. The beta diversity showed significant association with the altitude. Altitude had a significant effect on the diet composition but not on its alpha diversity. No distinct altitude-related genetic structure was evident among the host populations, and no correlation was revealed between the host genetic relatedness and microbiome composition nor between the host microbiome and the diet. Free thyroxine (FT4) levels increased almost linearly with the altitude but none of the bacterial ASVs were found to be specifically associated with hormone levels. Total thyroxine (TT4) levels correlated positively with microbiome diversity. Although we detected correlation between certain components of the thyroid hormone levels and the microbiome beta diversity, the pattern of their relationship remains inconclusive. [ABSTRACT FROM AUTHOR]

The animal gut microbiome acts as a crucial link between the host and its environment, playing a vital role in digestion, metabolism, physiology, and fitness. Using 16S rRNA metabarcoding, we investigated the effect of altitude on the microbiome composition of Anatolian Blind Mole Rats (Nannospalax xanthodon) across six locations and three altitudinal groups. We also factored in the host diet, as well as host microsatellite genotypes and thyroid hormone levels. The altitude had a major effect on microbiome composition, with notable differences in the relative abundance of several bacterial taxa across elevations. Contrary to prior research, we found no significant difference in strictly anaerobic bacteria abundance among altitudinal groups, though facultatively anaerobic bacteria were more prevalent at higher altitudes. Microbiome alpha diversity peaked at mid-altitude, comprising elements from both low and high elevations. The beta diversity showed significant association with the altitude. Altitude had a significant effect on the diet composition but not on its alpha diversity. No distinct altitude-related genetic structure was evident among the host populations, and no correlation was revealed between the host genetic relatedness and microbiome composition nor between the host microbiome and the diet. Free thyroxine (FT4) levels increased almost linearly with the altitude but none of the bacterial ASVs were found to be specifically associated with hormone levels. Total thyroxine (TT4) levels correlated positively with microbiome diversity. Although we detected correlation between certain components of the thyroid hormone levels and the microbiome beta diversity, the pattern of their relationship remains inconclusive.

The structure and function of the intergenic noncoding genome (repeatome) whether "selfish" and "junk" or "biochemically functional and regulatory" is still hotly debated, despite the mounting empirical and theoretical evidence supporting the regulatory role, provided by transposable elements, and the ENCODE results. In our studies in Israel on sympatric speciation (SS) in two evolutionary speciation models of abutting divergent ecologies, microclimatic at "Evolution Canyon" and geologic-edaphic at "Evolution Plateau", we showed genomically that SS is a common speciation model across life from bacteria to mammals. Since such contrasting and abutting ecologies, climatic, geologic, edaphic, abiotic and biotic abound globally, SS might be a common speciation model across the planet. During our SS studies we discovered an additional remarkable result supporting the regulatory role of the repeatome. We found that the noncoding genome, in both subterranean mammals and wild barley at "Evolution Plateau" present a genomic mirror image of the coding genome supporting the regulatory hypothesis of the repeatome. Moreover, the repeatome also succeeded to identify the four subterranean chromosomal climatically adaptive mole rat species in Israel. This genomic mirror imaging and repeatome function is now open to genomic exploration across life. [ABSTRACT FROM AUTHOR]

Sensory systems are attractive evolutionary models to address how organisms adapt to local environments that can cause ecological speciation. However, tests of these evolutionary models have focused on visual, auditory, and olfactory senses. Here, we show local adaptation of bitter taste receptor genes in two neighboring populations of a wild mammal—the blind mole rat Spalax galili— that show ecological speciation in divergent soil environments. We found that basalt-type bitter receptors showed higher response intensity and sensitivity compared with chalk-type ones using both genetic and cell-based functional analyses. Such functional changes could help animals adapted to basalt soil select plants with less bitterness from diverse local foods, whereas a weaker reception to bitter taste may allow consumption of a greater range of plants for animals inhabiting chalk soil with a scarcity of food supply. Our study shows divergent selection on food resources through local adaptation of bitter receptors, and suggests that taste plays an important yet underappreciated role in speciation. [ABSTRACT FROM AUTHOR]

A pilot monitoring survey of the lesser blind mole-rat Nannospalax (superspecies leucodon) in Bulgaria was carried out in July-October 2014 for the purposes of the National Biodiversity Monitoring System. A methodological approach for long-term monitoring of the species is proposed and discussed. A total of 122 transects were done in suitable habitats in four large territories representing three biogeographic regions in Bulgaria. Actual distribution data of the species were collected. The occurrence of N. leucodon is considered at the transect level, at the monitoring territory level and at the habitat type level. [ABSTRACT FROM AUTHOR]

Blind mole rats (BMRs) are solitary rodents which are tolerant to severe hypoxia. The aim of this study is to reveal the changes in nitric oxide (NO) and nitric oxide enzymes (NOS), which are involved in many physiological and pathological processes related with hypoxia, in BMRs under severe hypoxia. For this purpose, 12 subadult (11-15 moths) male Nannospalax nehringi were captured in Kars location. Captured BMRs were divided into two groups as Normoxic (NG) and Hypoxic (HG) randomly (n=6). NG were kept in completely dark, normoxic conditions for 52 h. HG were kept inside completely dark glovebox chamber with 7% oxygen flow for 52 h. After experimental protocol, NG were sacrificed under normoxic conditions and HG were sacrificed inside glovebox chamber with 7% oxygen. NO, iNOS, eNOS, nNOS and MDA levels of plasm and homogenized tissue samples were detected spectrophotometrically. All parameters of each sample were found to be high in HG compared to NG. But especially, NO was high in the lung tissues of HG. Additionally eNOS level of the kidney, liver and lung, iNOS levels of the liver and eNOS, and nNOS levels of the brain were found to be markedly high. Consequently, our data on NO and NOS enzyme production in Nannospalax nehringi tissues under hypoxia are compatible with the data obtained from other animals, but it contains differences in some points. We believe that these differences are different evolutionary adaptations of BMRs to hypoxia. [ABSTRACT FROM AUTHOR]

Background: Spalax, the blind mole rat, developed an extraordinary cancer resistance during 40 million years of evolution in a subterranean, hypoxic, thus DNA damaging, habitat. In 50 years of Spalax research, no spontaneous cancer development has been observed. The mechanisms underlying this resistance are still not clarified. We investigated the genetic difference between Spalax and mice that might enable the Spalax relative resistance to cancer development. We compared Spalax and mice responses to a treatment with the carcinogen 3-Methylcholantrene, as a model to assess Spalax' cancer-resistance. Results: We compared RNA-Seq data of untreated Spalax to Spalax with a tumor and identified a high number of differentially expressed genes. We filtered these genes by their expression in tolerant Spalax that resisted the 3MCA, and in mice, and found 25 genes with a consistent expression pattern in the samples susceptible to cancer among species. Contrasting the expressed genes in Spalax with benign granulomas to those in Spalax with malignant fibrosarcomas elucidated significant differences in several pathways, mainly related to the extracellular matrix and the immune system. We found a central cluster of ECM genes that differ greatly between conditions. Further analysis of these genes revealed potential microRNA targets. We also found higher levels of gene expression of some DNA repair pathways in Spalax than in other murines, like the majority of Fanconi Anemia pathway. Conclusion: The comparison of the treated with the untreated tissue revealed a regulatory complex that might give an answer how Spalax is able to restrict the tumor growth. By remodeling the extracellular matrix, the possible growth is limited, and the proliferation of cancer cells was potentially prevented. We hypothesize that this regulatory cluster plays a major role in the cancer resistance of Spalax. Furthermore, we identified 25 additional candidate genes that showed a distinct expression pattern in untreated or tolerant Spalax compared to animals that developed a developed either a benign or malignant tumor. While further study is necessary, we believe that these genes may serve as candidate markers in cancer detection. [ABSTRACT FROM AUTHOR]

Blind mole rats of the genus Spalax are the only mammalian species to date for which spontaneous cancer has never been reported and resistance to carcinogen-induced cancers has been demonstrated. However, the underlying mechanisms are still poorly understood. The fact that Spalax spp. are also hypoxia-tolerant and long-lived species implies the presence of molecular adaptations to prevent genomic instability, which underlies both cancer and aging. We previously demonstrated the upregulation of transcripts related to DNA replication and repair pathways in Spalax. Yet, to date, no direct experimental evidence for improved genomic maintenance has been demonstrated for this genus. Here, we show that compared with skin fibroblasts of the above-ground rat, Spalax carmeli skin fibroblasts in culture resist several types of genotoxic insult, accumulate fewer genotoxic lesions and exhibit an enhanced DNA repair capacity. Our results strongly support that this species has evolved efficient mechanisms to maintain DNA integrity as an adaptation to the stressful conditions in the subterranean habitat. [ABSTRACT FROM AUTHOR]

It is thought that Spalacidae (Rodentia, Mammalia) originated in Anatolia. They are widespread among Neogene-aged faunas in Anatolia and they are used as zonal fossils because of their strong evolutionary dynamics. Only one fossil species (S. odessanus, Middle Pliocene) has been identified from the genus Spalax, which has more than 14 species presently. There are no fossil findings of this genus in Anatolia. Early Pleistocene-aged Spalax denizliensis sp. nov. from the Denizli Basin is the youngest fossil Spalax species and it will be helpful to understand the evolution of recent Spalax species. [ABSTRACT FROM AUTHOR]

Mole rats are exclusively subterranean and highly specialized rodents. Their long lifespans, remarkable anti-cancer mechanisms, and various distinctive adaptive features make them a useful research model. Moreover, opposing convergence of morphological traits, they have developed extremely high karyotype variability. Thus, 74 chromosomal forms have been described so far and new ones are being revealed continuously. These evolved during the process of rapid radiation and occur in different biogeographical regions. During research into their reproductive biology we have already provided substantial evidence for species-level separation of these taxa. Here, we review diverse chromosomal forms of the lesser blind mole rat, Mediterranean Nannospalax leucodon, distributed in South-eastern Europe, their karyotype records, biogeography, origin, and phylogeny from our extensive research. In the light of new data from molecular genetic studies, we question some former valuations and propose a cryptospecies rank for seven reproductively isolated chromosomal forms with sympatric and parapatric distribution and clear ecogeographical discrepances in their habitats, as well as new experimental and theoretical methods for understanding the courses of speciation of these unique fossorial mammals. [ABSTRACT FROM AUTHOR]

The blind mole rats (Spalacinae) reveal fascinating chromosomal variation, resulting from complex karyotype re-arrangements. This variation occurs between species, between populations of single species (polytypy) and within populations (polymorphism). This article reviews the current knowledge on blind mole rats’ karyotypes and their variation. A special attention is paid to differentiation of the karyotype within a species and the patterns of chromosomal variation, which result in evolution of distinct chromosomal races (cytotypes). The chromosome races are defined as a group of geographically contiguous or recently separated populations which share a similar chromosome complement by descent. The present review indicated the existence of 73 distinct chromosome races recorded in blind mole rats classified within the genus Nannospalax, along with the seven species recognized within the genus Spalax. In total, 12 distinct diploid numbers of chromosomes were reported (2n = 36-62); and variation in chromosome morphologies was observed between populations with the same number of chromosomes (NF = 62-124). The blind mole rats classified in the genus Spalax revealed rather uniform karyotype both between and within the recognized species. Considering the traditional species classified in the Nannospalax genus, 25 races can be distinguished within N. leucodon, 28 races within N. xanthodon and 20 races within N. ehrenbergi. Hybrids between the races are found only exceptionally and they seem to be almost absent in extensive areas (Europe, Turkey). This fact indicates that chromosomal evolution in blind mole rats may be related to speciation processes. The definitive phylogenetic and taxonomic conclusions can be derived only after application of reliable molecular markers and setting of estimates of genetic distances and gene flow between populations. [ABSTRACT FROM AUTHOR]

Incipient sympatric speciation in blind mole rat, Spalax galili, in Israel, caused by sharp ecological divergence of abutting chalk- basalt ecologies, has been proposed previously based on mitochondrial and whole-genome nuclear DNA. Here, we present new evidence, including transcriptome, DNA editing, microRNA, and codon usage, substantiating earlier evidence for adaptive divergence in the abutting chalk and basalt populations. Genetic divergence, based on the previous and new evidence, is ongoing despite restricted gene flow between the two populations. The principal component analysis, neighbor-joining tree, and genetic structure analysis of the transcriptome clearly show the clustered divergent two mole rat populations. Gene-expression level analysis indicates that the population transcriptome divergence is displayed not only by soil divergence but also by sex. Gene ontology enrichment of the differentially expressed genes from the two abutting soil populations highlights reproductive isolation. Alternative splicing variation of the two abutting soil populations displays two distinct splicing patterns. L-shaped FST distribution indicates that the two populations have undergone divergence with gene flow. Transcriptome divergent genes highlight neurogenetics and nutrition characterizing the chalk population, and energetics, metabolism, musculature, and sensory perception characterizing the abutting basalt population. Remarkably, microRNAs also display divergence between the two populations. The GC content is significantly higher in chalk than in basalt, and stress-response genes mostly prefer nonoptimal codons. The multiple lines of evidence of ecological- genomic and genetic divergence highlight that natural selection overrules the gene flow between the two abutting populations, substantiating the sharp ecological chalk-basalt divergence driving sympatric speciation. [ABSTRACT FROM AUTHOR]

The Nrf2–Keap1 pathway is crucial for the cellular antioxidant and hypoxia response in vertebrates. Deciphering its modifications in hypoxia-adapted animals will help understand its functionality under environmental stress and possibly allow for knowledge transfer into biomedical research. The blind mole rat Spalax , a long-lived cancer-resistant rodent, lives in burrows underground and is adapted to severely hypoxic conditions. Here we have conducted a bioinformatical survey of Spalax core genes from the Nrf2–Keap1 pathway on the coding sequence level in comparison to other hypoxia-tolerant and -sensitive rodents. We find strong sequence conservation across all genes, illustrating the pathway's importance. One of the central players however, Spalax Keap1, shows a non-conservative amino acid substitution from tyrosine to cysteine in its intervening region (IVR) domain. Cysteines in this location have been shown to be of high functional relevance to the binding and degradation of Nrf2. Therefore, this peculiar substitution could influence the cellular Nrf2 levels in Spalax and, thereby, downstream gene expression in the antioxidant pathway, contributing to the special adaptive phenotype of the blind mole rat. [ABSTRACT FROM AUTHOR]

A costly search for food in subterranean rodents resulted in various adaptations improving their foraging success under given ecological conditions. In Spalax ehrenbergi superspecies, adaptations to local ecological conditions can promote speciation, which was recently supposed to occur even in sympatry at sites where two soil types of contrasting characteristics abut each other. Quantitative description of ecological conditions in such a site has been, nevertheless, missing. We measured characteristics of food supply and soil within 16 home ranges of blind mole rats Spalax galili in an area subdivided into two parts formed by basaltic soil and pale rendzina. We also mapped nine complete mole rat burrow systems to compare burrowing patterns between the soil types. Basaltic soil had a higher food supply and was harder than rendzina even under higher moisture content and lower bulk density. Population density of mole rats was five-times lower in rendzina, possibly due to the lower food supply and higher cover of Sarcopoterium shrubs which seem to be avoided by mole rats. A combination of food supply and soil parameters probably influences burrowing patterns resulting in shorter and more complex burrow systems in basaltic soil. [ABSTRACT FROM AUTHOR]

The article discusses a study on the karyotype of the Anatolian Spalacinae populations of blind mole rats Nannospalax xanthodon and Nannospalax ehrenbergi. Topics covered include uncertainty over Spalacinae taxonomy and species discrimination, bi-armed and acrocentric autosomal pairs in the karyotype, and the localization of nucleolar organizer regions in various autosomal pairs. The need for a taxonomic revision of the Nannospalax genus' species structure is also mentioned.

Background Subterranean mammals have been of great interest for evolutionary biologists because of their highly specialized traits for the life underground. Owing to the convergence of morphological traits and the incongruence of molecular evidence, the phylogenetic relationships among three subfamilies Myospalacinae (zokors), Spalacinae (blind mole rats) and Rhizomyinae (bamboo rats) within the family Spalacidae remain unresolved. Here, we performed de novo transcriptome sequencing of four RNA-seq libraries prepared from brain and liver tissues of a plateau zokor (Eospalax baileyi) and a hoary bamboo rat (Rhizomys pruinosus), and analyzed the transcriptome sequences alongside a published transcriptome of the Middle East blind mole rat (Spalax galili). We characterize the transcriptome assemblies of the two spalacids, and recover the phylogeny of the three subfamilies using a phylogenomic approach. Results Approximately 50.3 million clean reads from the zokor and 140.8 million clean reads from the bamboo rat were generated by Illumina paired-end RNA-seq technology. All clean reads were assembled into 138,872 (the zokor) and 157,167 (the bamboo rat) unigenes, which were annotated by the public databases: the Swiss-prot, Trembl, NCBI non-redundant protein (NR), NCBI nucleotide sequence (NT), Gene Ontology (GO), Cluster of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). A total of 5,116 nuclear orthologous genes were identified in the three spalacids and mouse, which was used as an outgroup. Phylogenetic analysis revealed a sister group relationship between the zokor and the bamboo rat, which is supported by the majority of gene trees inferred from individual orthologous genes, suggesting subfamily Myospalacinae is more closely related to subfamily Rhizomyinae. The same topology was recovered from concatenated sequences of 5,116 nuclear genes, fourfold degenerate sites of the 5,116 nuclear genes and concatenated sequences of 13 protein coding mitochondrial genes. Conclusions This is the first report of transcriptome sequencing in zokors and bamboo rats, representing a valuable resource for future studies of comparative genomics in subterranean mammals. Phylogenomic analysis provides a conclusive resolution of interrelationships of the three subfamilies within the family Spalacidae, and highlights the power of phylogenomic approach to dissect the evolutionary history of rapid radiations in the tree of life. [ABSTRACT FROM AUTHOR]

Background: Concealing coloration in rodents is well established. However, only a few studies examined how soil color, pelage color, hair-melanin content, and genetics (i.e., the causal chain) synergize to configure it. This study investigates the causal chain of dorsal coloration in Israeli subterranean blind mole rats, Spalax ehrenbergi. Methods: We examined pelage coloration of 128 adult animals from 11 populations belonging to four species of Spalax ehrenbergi superspecies (Spalax galili, Spalax golani, Spalax carmeli, and Spalax judaei) and the corresponding coloration of soil samples from the collection sites using a digital colorimeter. Additionally, we quantified hair-melanin contents of 67 animals using HPLC and sequenced the MC1R gene in 68 individuals from all four mole rat species. Results: Due to high variability of soil colors, the correlation between soil and pelage color coordinates was weak and significant only between soil hue and pelage lightness. Multiple stepwise forward regression revealed that soil lightness was significantly associated with all pelage color variables. Pelage color lightness among the four species increased with the higher southward aridity in accordance to Gloger's rule (darker in humid habitats and lighter in arid habitats). Darker and lighter pelage colors are associated with darker basalt and terra rossa, and lighter rendzina soils, respectively. Despite soil lightness varying significantly, pelage lightness and eumelanin converged among populations living in similar soil types. Partial sequencing of the MC1R gene identified three allelic variants, two of which were predominant in northern species (S. galili and S. golani), and the third was exclusive to southern species (S. carmeli and S. judaei), which might have caused the differences found in pheomelanin/eumelanin ratio. Conclusion/Significance: Darker dorsal pelage in darker basalt and terra rossa soils in the north and lighter pelage in rendzina and loess soils in the south reflect the combined results of crypsis and thermoregulatory function following Gloger's rule. [ABSTRACT FROM AUTHOR]

We performed this study on the subterranean mole rat Nannospalax xanthodon (Nehring, 1898) in western Turkey and we analyzed karyotypes of 121 specimens from 54 localities. We determined that N. xanthodon has 2n = 36, NF = 70; 2n = 38, NF = 74; 2n = 40, NF = 72; 2n = 50, NF = 70; 2n = 50, NF = 74; 2n = 52, NF = 70; 2n = 56, NF = 72; and 6 different cytotypes of 2n = 60, NF = 74, 76, 78, 80, 82, 84 in the specimens analyzed from western Turkey. We filled most of the karyological gaps in western Anatolia and documented distributional areas of cytotypes. [ABSTRACT FROM AUTHOR]

Background: Concealing coloration in rodents is well established. However, only a few studies examined how soil color, pelage color, hair-melanin content, and genetics (i.e., the causal chain) synergize to configure it. This study investigates the causal chain of dorsal coloration in Israeli subterranean blind mole rats, Spalax ehrenbergi. Methods: We examined pelage coloration of 128 adult animals from 11 populations belonging to four species of Spalax ehrenbergi superspecies (Spalax galili, Spalax golani, Spalax carmeli, and Spalax judaei) and the corresponding coloration of soil samples from the collection sites using a digital colorimeter. Additionally, we quantified hair-melanin contents of 67 animals using HPLC and sequenced the MC1R gene in 68 individuals from all four mole rat species. Results: Due to high variability of soil colors, the correlation between soil and pelage color coordinates was weak and significant only between soil hue and pelage lightness. Multiple stepwise forward regression revealed that soil lightness was significantly associated with all pelage color variables. Pelage color lightness among the four species increased with the higher southward aridity in accordance to Gloger's rule (darker in humid habitats and lighter in arid habitats). Darker and lighter pelage colors are associated with darker basalt and terra rossa, and lighter rendzina soils, respectively. Despite soil lightness varying significantly, pelage lightness and eumelanin converged among populations living in similar soil types. Partial sequencing of the MC1R gene identified three allelic variants, two of which were predominant in northern species (S. galili and S. golani), and the third was exclusive to southern species (S. carmeli and S. judaei), which might have caused the differences found in pheomelanin/eumelanin ratio. Conclusion/Significance: Darker dorsal pelage in darker basalt and terra rossa soils in the north and lighter pelage in rendzina and loess soils in the south reflect the combined results of crypsis and thermoregulatory function following Gloger's rule. [ABSTRACT FROM AUTHOR]

Sympatric speciation has been controversial since it was first proposed as a mode of speciation. Subterranean blind mole rats (Spalacidae) are considered to speciate allopatrically or peripatrically. Here, we report a possible incipient sympatric adaptive ecological speciation in Spalax galili (2n = 52). The study microsite (0.04 km2) is sharply subdivided geologically, edaphically, and ecologically into abutting barrier-free ecologies divergent in rock, soil, and vegetation types. The Pleistocene Alma basalt abuts the Cretaceous Senonian Kerem Ben Zimra chalk. Only 28% of 112 plant species were shared between the soils. We examined mitochondrial DNA in the control region and ATP6 in 28 mole rats from basalt and in 14 from chalk habitats. We also sequenced the complete mtDNA (16,423 bp) of four animals, two from each soil type. Remarkably, the frequency of all major haplotype clusters (HC) was highly soil-biased. HCI and HCII are chalk biased. HC-III was abundant in basalt (36%) but absent in chalk; HC-IV was prevalent in basalt (46.5%) but was low (20%) in chalk. Up to 40% of the mtDNA diversity was edaphically dependent, suggesting constrained gene flow. We identified a homologous recombinant mtDNA in the basalt/chalk studied area. Phenotypically significant divergences differentiate the two populations, inhabiting different soils, in adaptive oxygen consumption and in the amount of outsidenest activity. This identification of a possible incipient sympatric adaptive ecological speciation caused by natural selection indirectly refutes the allopatric alternative. Sympatric ecological speciation may be more prevalent in nature because of abundant and sharply abutting divergent ecologies. [ABSTRACT FROM AUTHOR]

The Rhizomyinae is a subfamily of myomorph rodents within the family Spalacidae. It is subdivided into two tribes: the Asian Rhizomyini and the Tachyoryctini. Even though the origin of the Tachyoryctini is to be found in Asia, they are nowadays restricted to Africa. African Tachyoryctini are known from the Late Miocene and include a single genus with five species: the recently discovered Tachyoryctes makooka, which is described in detail in this work, T. pliocaenicus, T. konjiti and the two extant T. splendens and T. macrocephalus. Their closest Asian counterparts are the Late Miocene Protachyoryctes and Eicooryctes. A cladistic analysis involving all the above-mentioned taxa was carried out. Protachyoryctes tatroti turned out to be the most basal species of the ingroup followed by the Ethiopian T. makooka. Both taxa show some primitive traits like the protosinus on the first upper molars, short but distinct mesolophids on the lower molars and the presence of the mure on the cheek teeth. T. pliocaenicus and the most derived Tachyoryctini share the synapomorphic reduction or loss of these characters. The increase in hypsodonty evidenced in this lineage is correlated with the transition from a humid to a drier climate that started at the beginning of the Pliocene. [ABSTRACT FROM AUTHOR]

Cannomys and Rhizomys are the sole living genera of the tribe Rhizomyini (Rhizomyinae, Spalacidae, Rodentia), known in the fossil record since the Late Miocene. The dental morphology of fossil Rhizomyini has been described in detail but until recently such descriptions were unavailable for extant species. A detailed account of the morphology and dental wear pattern of the cheek teeth of C. badius is provided here based on the examination of museum specimens. Three stages of wear are recognized. Cannomys shares with Rhizomys the synapomorphy of having a mesolophid that is a long continuation of the protoconid on the first lower molar. There are significant differences between these taxa, such as the much smaller size of the cheek teeth and the trilophodont dental pattern of the M2, M3, and m2 in Cannomys. [ABSTRACT FROM AUTHOR]

The blind subterranean mole rat (Spalax ehrenbergi superspecies) is a model animal for survival under extreme environments due to its ability to live in underground habitats under severe hypoxic stress and darkness. Here we report the transcriptome sequencing of Spalax galili, a chromosomal type of S. ehrenbergi. cDNA pools from muscle and brain tissues isolated from animals exposed to hypoxic and normoxic conditions were sequenced using Sanger, GS FLX, and GS FLX Titanium technologies. Assembly of the sequences yielded over 51,000 isotigs with homology to ,12,000 mouse, rat or human genes. Based on these results, it was possible to detect large numbers of splice variants, SNPs, and novel transcribed regions. In addition, multiple differential expression patterns were detected between tissues and treatments. The results presented here will serve as a valuable resource for future studies aimed at identifying genes and gene regions evolved during the adaptive radiation associated with underground life of the blind mole rat. [ABSTRACT FROM AUTHOR]

wide range of techniques, including high-throughput DNA sequencing methods, have been applied to the evaluation of the normal intestinal flora. However, the inability to grow many of those species in culture imposes substantial constraints on the techniques used to evaluate this important community. The presence of biofilms in the normal gut adds further complexity to the issue. In this study, a flow cytometric analysis was used to separate intact bacterial cells, cell debris, and other particulate matter based on bacteria-specific staining and particle size. In addition, an analysis of biofilm formation using fluorescent light microscopy was conducted. Using these approaches, the ratio of bacterial cell debris to intact bacterial cells as a measure of spontaneous lysis of bacterial cells in the gut of the Cape dune mole-rat ( Bathyergus suillus) and the laboratory rabbit ( Oryctolagus cuniculus) was examined, and the degree of biofilm formation was semi-quantitatively assessed. The results suggest that the degree of spontaneous cell lysis was greater in the appendix than in the cecum in both the mole-rat and the rabbit. Further, the results point toward extensive epithelial-associated biofilm formation in the proximal mole-rat and rabbit large bowel, although the biofilms may be less structured than those found in laboratory rodents and in humans. [ABSTRACT FROM AUTHOR]

Our study examined the impact of daylight (photophase) wavelength on the photoentrainment sensitivity of two species with vastly different visual systems. Social voles (Microtus socialis) and 'blind' mole rats (Spalax ehrenbergi) were exposed to short- wavelength (479nm) or long-wavelength (697nm) light at an intensity of 293 μW cm-2. Rhythms of urine production, urinary 6- sulfatoxymelatonin (6-SMT), urinary metabolites of adrenaline and cortisol, and oxygen consumption (VO2) were used as markers for the sensitivity of the photoentrainment system. Significant 24-h rhythms were detected in all variables for both species under short-wavelength light, whereas ultradian rhythms of 12- or 8-h were detected under long-wavelength light. Wavelength inversely affected 6-SMT levels in M. socialis (negative correlation) and S. ehrenberg! (positive correlation). Increased levels of stress hormone metabolites were detected in M. socialis under the long-wavelength light whereas, in S. ehrenbergi elevated levels were secreted under short-wavelength light. Long-wavelength light increased VO2 in M. socialis and decreased it in S. ehrenbergi; short-wavelength light elicited the opposite effects. Our results indicate that photophase wavelength is an integral light property for modulating photoperiodic responses in mammals, including visually challenged species. Finally, the spectral-induced differential responses between the two species potentially represent adaptive physiological flexibility in species with contrasting visual and habitat challenges. [ABSTRACT FROM AUTHOR]

Abstract: Until recently, zokors (Myospalacinae) were assigned to the Cricetidae family. However, analysis of mitochondrial and nuclear genes suggests a sister relationship between zokors and subterranean rodents of the Spalacidae family, namely blind mole rats (Spalacinae) and bamboo rats (Rhizomyinae). Here, we cloned and sequenced copies of the B1 short interspersed element (SINE) from the genome of zokor Myospalax psilurus. The consensus nucleotide sequence of zokor B1 was very similar to spalacids and rhizomyids, but not cricetids. Similar to spalacids (Spalax microphthalmus) and rhizomyids (Tachyoryctes splendens), zokor contained two variants of the 4.5SI small nuclear RNA. The longer variant (L-variant, 104 nucleotides) was found only in zokor, spalacids and rhizomyids. The short, or S-variant (98 nucleotides), had a wider distribution; however, analysis of the nucleotide sequences of S-variants of 4.5SI RNA confirmed that zokors are closely related to spalacids and rhizomyids, but not to cricetids. The evolution of the 4.5SI RNA genes and pseudogenes is discussed. [Copyright &y& Elsevier]

The aim of this study was to uncover the process of initial spatial mapping of the environment. For this, blind mole rats (Spalax ehrenbergi), were tested in an unfamiliar square arena, in order to reveal how they construct a spatial representation. The mole rats first displayed a build-up phase, in which they gradually formed a path along the perimeter while travelling slowly, frequently pausing and repeating previously travelled segments of the path. This behaviour was followed by a free-travel phase, in which the mole rats appeared to locomote smoothly along the perimeter and through the centre of the arena while travelling faster with fewer stops or repetitions of path segments. Familiarity with the environment was reflected in local shortcuts at the arena corners and global shortcuts (crosscuts) through the arena centre. We suggest that scanning the perimeter throughout the build-up phase constitute a process of calibration, i.e. forming an initial representation of the size and perhaps the shape of the environment - a sort of basic global map. We further suggest that this calibration is later used for navigation, as indicated by the emergence of global crosscuts in the subsequent phase. Further investigation of the build-up phase, e.g. by manipulating environment size, might provide additional insight into the course of establishment of global environment representation (mapping). [ABSTRACT FROM AUTHOR]

Abstract: Cav1.2 L-type calcium channels are essential in heart and smooth muscle contraction. Rat Cav1.2 gene contains 11 alternatively spliced exons (1a, 1, 8a, 8, 9⁎, 21, 22, 31, 32, 32-6nt and 33) which can be assorted to generate a large number of functionally distinct splice variants. Until now, it is unknown whether the utilization of these alternatively spliced exons is altered in the hypertrophied hearts of hypertensive rats. By comparing the assortments of these 11 exons in full-length Cav1.2 transcripts derived from Spontaneously Hypertensive Rats (SHRs) and Wistar Kyoto Rats (WKYs) hearts, we found that the inclusion of Cav1.2 alternative exons was significantly different between the two rats both at individual loci and in combinatorial arrangements. Functional characterizations of three Cav1.2 channel splice variants that were identified to be significantly altered in SHR hypertrophied cardiomyocytes demonstrated distinct whole-cell electrophysiological properties when expressed in HEK 293 cells. Interestingly, aberrant splice variants which included or excluded both mutually exclusive exons 21/22 or exons 31/32 were found to be increased in hypertensive rats. Two aberrant splice variants that included both exons 21 and 22 were found to be unable to conduct currents even though they expressed proteins with the predicted molecular mass. Characterization of one of the aberrant splice variants showed that it exerted a dominant negative effect on the functional Cav1.2 channels when co-expressed in HEK293 cells. The altered combinatorial splicing profiles of Cav1.2 transcripts identified in SHR hearts provide a different and new perspective in understanding the possible role of molecular remodeling of Cav1.2 channels in cardiac hypertrophy as a consequence of hypertension. [Copyright &y& Elsevier]

Background & Aims: The neurobiologic basis of pancreatic hyperalgesia in chronic pancreatitis (CP) is understood poorly and there is a need to identify novel therapeutic targets. Our aim was to study the role of the transient receptor potential vanilloid 1 (TRPV1), a key integrator of noxious stimuli, in the pathogenesis of pancreatic pain in a rat model of CP. Methods: CP was induced in rats by intraductal injection of trinitrobenzene sulfonic acid. TRPV1 currents in pancreas-specific DRG neurons were measured using perforated patch-clamp techniques. Reverse-transcription polymerase chain reaction was used to measure mRNA expression of TRPV1 in these neurons after laser capture microdissection. Immunofluorescence and Western blot analysis, using TRPV1-specific antibodies, also were performed. Pancreatic hyperalgesia was assessed by rat’s nocifensive behavior to electrical stimulation of the pancreas. Results: CP was associated with a 4-fold increase in capsaicin-induced current density (P < .02), along with an increase in the proportion of pancreas-specific DRG neurons that responded to capsaicin (52.9% in controls vs 79.0% in CP; P < .05). CP also was associated with a significant increase in TRPV1 expression both at the messenger RNA and protein level in whole thoracic DRGs and pancreas-specific sensory neurons. Systemic administration of the TRPV1 antagonist SB-366791 markedly reduced both visceral pain behavior and referred somatic hyperalgesia in rats with CP, but not in control animals. Conclusions: TRPV1 up-regulation and sensitization is a specific molecular mechanism contributing to hyperalgesia in CP and represents a useful target for treating pancreatic hyperalgesia caused by inflammation. [Copyright &y& Elsevier]

Background & Aims: This study examined the possible role of endotoxinemia (from increased gut permeability) as an additional trigger factor for overt pancreatic disease and as a promoter of chronic pancreatic injury in alcoholics by using a rat model of chronic alcohol feeding and in vitro experiments with cultured pancreatic stellate cells (PSCs), the key mediators of pancreatic fibrosis. Methods: In the in vivo model, Sprague-Dawley rats fed isocaloric Lieber-DeCarli liquid diets ± alcohol for 10 weeks were challenged with a single dose or 3 repeated doses of the endotoxin lipopolysaccharide (LPS) and the pancreas was examined. In the in vitro studies, rat PSCs were assessed for activation on exposure to LPS ± ethanol. The expression of LPS receptors TLR4 and CD14 also was assessed in rat and human PSCs. Results: In the in vivo model, single or repeated LPS challenge resulted in significantly greater pancreatic injury in alcohol-fed rats compared with rats fed the control diet without alcohol. Notably, repeated LPS injections caused pancreatic fibrosis in alcohol-fed rats, but not in rats fed the control diet. In the in vitro studies, PSCs were activated by LPS. Alcohol + LPS exerted a synergistic effect on PSC activation. Importantly, both rat and human PSCs expressed TLR4 and CD14. Conclusions: This study describes, for the first time, a clinically relevant animal model of alcohol-related pancreatic injury and provides strong in vivo and in vitro evidence that suggests that LPS is a trigger factor in the initiation and progression of alcoholic pancreatitis. [Copyright &y& Elsevier]

Erythropoietic functions of erythropoietin (EPO) are mediated by its receptor (EPO-R), which is present on the cell surface of erythroid progenitors and induced by hypoxia. We focused on EPO-R from Spalax galili (sEPO-R), one of the four Israeli species of the subterranean blind mole rat, Spalax ehrenbergi superspecies, as a special natural animal model of high tolerance to hypoxia. Led by the intriguing observation that most of the mouse EPO-R (mEPO-R) is retained in the endoplasmic reticulum (ER), we hypothesized that sEPO-R is expressed at higher levels on the cell surface, thus maximizing the response to elevated EPO, which has been reported in this species. Indeed, we found increased cell-surface levels of sEPO-R as compared with mEPO-R by using flow cytometry analysis of BOSC cells transiently expressing HA-tagged EPO-Rs (full length or truncated). We then postulated that unique extracellular sEPO-R sequence features contribute to its processing and cell-surface expression. To map these domains of the sEPO-R that augment receptor maturation, we generated EPO-R derivatives in which parts of the extracellular region of mEPO-R were replaced with the corresponding fragments of sEPO-R. We found that an extracellular portion of sEPO-R, harboring the N-glycosylation site, conferred enhanced maturation and increased transport to the cell surface of the respective chimeric receptor. Taken together, we demonstrate higher surface expression of sEPO-R, attributed at least in part to increased ER exit, mediated by an extracellular region of this receptor. We speculate that these sEPO-R sequence features play a role in the adaptation of Spalax to extreme hypoxia. [ABSTRACT FROM AUTHOR]

Objective: Smooth muscle cell proliferation (SMC) is a pivotal factor in the development of intimal hyperplasia after vascular injury. A number of growth factors, including insulin-like growth factor-1 (IGF-1), have been shown to be involved in SMC proliferation. We evaluated the effect of picropodophyllin (PPP), a new IGF-1 receptor inhibitor, in the prevention of SMC proliferation and development of intimal hyperplasia after vascular injury. Methods: The effects of systemic administration of PPP on intimal hyperplasia were studied in a balloon rat carotid injury model. Lesions were quantified by morphometry and SMC proliferation and apoptosis was studied by immunohistochemical staining for proliferating cell nuclear antigen (PCNA) and activated caspase 3, respectively. The effect of PPP on rat aortic SMC proliferation and apoptosis was studied in vitro by using cell counting, 3[H]-thymidine incorporation, and a flow cytometry assay for annexin V. Phosphorylation of the IGF-1 receptor, protein kinase B (Akt), and extracellular signal-regulated kinase 1/2 (ERK1/2) in vitro and in vivo were analyzed by using Western blotting. Results: PPP inhibited IGF-1–mediated SMC proliferation in vitro but no significant increase in apoptosis was detected. In rats treated with PPP, a more than a twofold reduction in carotid intima area was observed 2 weeks after balloon injury, a significant decrease in PCNA staining was demonstrated in early lesions, but activated caspase 3 was not detected. In addition, PPP attenuated phosphorylation of the IGF-1 receptor, Akt, and ERK1/2 in IGF-1–stimulated SMCs in vitro, and a reduced phosphorylation of the IGF-1 receptor and Akt was found in balloon-injured carotid arteries in rats treated with PPP. Conclusion: These results show that PPP potently blocks IGF-1–mediated phosphorylation of the IGF-1 receptor in SMCs, decreases downstream Akt and ERK1/2 activation, inhibits SMC replication, and subsequently attenuates intimal hyperplasia after balloon injury of rat carotid arteries. [Copyright &y& Elsevier]

The αB-crystallin and HspB2 genes are located ≈0.9 kb apart in a head-to-head arrangement in mammals. Previous experiments have shown that a truncated -668/+45 αB-crystallin enhancer/promoter fragment from blind mole rats (Spalax ehrenbergi), which have nonfunctional lenses, lacks lens activity and has enhanced muscle activity in transgenic mice. Here we show that the full-length mole rat αB-crystallin intergenic region behaves similarly in transgenic mice. A two-nucleotide mutation (-273CA→G) in the mouse αB-crystallin enhancer/promoter fragment mimicking the wild-type mole rat sequence functionally converted the mouse promoter fragment to that of the wild-type mole rat promoter when tested in transgenic mice. The reciprocal mutation in the mole rat promoter fragment (-272G→CA) did not affect its activity. Oligonucleotides from the wild-type mouse and mole rat αB-crystallin promoter region under study formed distinct complexes with nuclear proteins from cultured cells. The mouse mutant sequence lost binding ability, whereas the mutated mole rat sequence gained the ability to form a complex similar in size to that of the wild-type mouse oligonucleotide. Our data support the idea that blind mole rats' αB-crystallin promoter activity was modified during the evolution of subterranean life and shows that tissue-specific promoter activity can be modulated by changing as few as two apparently neutral nucleotides in the mouse αB-crystallin enhancer region, implying the importance of the context of regulatory sequences for promoter activity. [ABSTRACT FROM AUTHOR]

Abstract: The material of 31 specimens of Nannospalax ehrenbergiwas collected from 11 different localities in the Hatay region in south Anatolia. The specimens were studied in respect to their morphological and karyological characteristics in detail. Some taxonomic characteristics and measurements of the body and skull were investigated. The data obtained from the specimens were compared with the results of previously published accounts and with samples collected from more than 16 other localities in Turkey, Israel, Jordan and Egypt. The karyotypes of the Yaylada&guml; populations have 2n = 48, NF = 74 and NFa = 70, whereas the karyotypes of the other Hatay populations have 2n = 52, NF = 74, and NFa = 70. The results show that this region's mole rat populations have morphological and karyological features different to those of other populations. [ABSTRACT FROM AUTHOR]

Blind subterranean mole rats (Spalax, Spalacidae) evolved adaptive strategies to cope with hypoxia that climaxes during winter floods in their burrows. By using real-time PCR, we compared gene expression of erythropoietin (Epo), a key regulator of circulating erythrocytes, and hypoxia-inducible factor 1α (HIF-1α), Epo expression inducer, in the kidneys of Spalax and white rats, Rattus norvegicus. Our results show significantly higher, quicker, and longer responses to different O2 levels in Spalax compared with Rattus. (i) In normoxia, both Spalax and Rattus kidneys produce small amounts of Epo. Maximal expression of Rattus Epo is noticed after a 4-h hypoxia at 6% O2. Under these conditions, Spalax Epo levels are 3-fold higher than in Rattus. After 24 h of 10% O2, SpaIn Epo reaches its maximal expression, remarkably 6-fold higher than the maximum in Rattus; (ii) the HIF-1α level in normoxia is 2-fold higher in Spalax than in Rattus. Spalax HIF-lee achieves maximal expression after 4-h hypoxia at 3% O2, a 2-fold increase compared with normoxia, whereas no significant change was detected in Rattus HIF-1α at any of the conditions studied; (iii) at 6% O2 for 10 h, in which Rattus cannot survive, Epo and HIF-1α levels in Spalax galili, living in heavily flooded soils, are higher than in Spalax judaei, residing in light aerated soil. We suggest that this pattern of Epo and HIF-1α expression is a substantial contribution to the adaptive strategy of hypoxia tolerance in Spalax, evolved during 40 million years of evolution to cope with underground hypoxic stress. [ABSTRACT FROM AUTHOR]

Twenty two (12 males, 10 females) specimens of Nannospalax nehringi, collected from Northeast Anatolia (Turkey), were used for morphological and karyological studies. The specimens from the Kars population have foramina on the premaxillonasal suture. These foramina are absent in the Erzurum, Aĝri and Van populations. The diploid number of chromosomes in the Erzurum and Kars population is 2n = 50. The number of chromosomal arms (NF) is 70 and the number of autosomal arms (NFa) is 66. Their karyotypes consist of nine pairs of metacentric and submetacentric autosomes and 15 pairs of acrocentric autosomes. The Aĝri and Van populations have 2n = 48 chromosomes. The number of chromosomal arms (NF) is 68 and the number of autosomal arms (NFa) is 64. The autosomal set has nine pairs of blarmed, and 14 pairs of acrocentric chromosomes. The X chromosomes are large submetacentric and the Y chromosomes are small acrocentric in all populations, When these results are compared with previous studies, Nannospalax nehringi specimens from Northeast Anatolia have some differences in their skull and chromosome morphology. [ABSTRACT FROM AUTHOR]

Describes the behavioral development of the blind mole rate, Spalax ehrenbergi, from the day of birth until the young disperse and establish their own independent territories. Wandering around the nest at about two weeks; Eating solid food in the nest area; Gathering of food and carrying to mother's nest; Grooming head with forepaws.

Focuses on a study on the reproductive biology and development of the fossorial and social coruro or mole-rat. Colony size and structure; Phylogenetic and ecological aspects; Reproductive and developmental parameters; Materials and methods employed; Results and discussion of study.

The article presents a design of a newly developed metal pipe-type trap for catching live mole rats (Spalacinae), which was evaluated in several field trials. Blind mole rats are cited to be interesting subjects of bio-medical research, also acting as important agricultural pests. The trap was found to be efficient and thus considered as a substantive alternative to other types of live traps. It also hints the trap's likely usefulness in catching other subterranean mammal species. Figures are also given which show the working mechanism of the pipe-type trap and the use of the trap in the field.

The Y chromosome in mammals is variable, even in closely related species. Middle East blind mole rats Nannospalax ehrenbergi demonstrate autosomal variability, which probably leads to speciation. Here, we compare the mitotic and meiotic chromosomes of mole rats. For the first time, we studied the behavior of their sex chromosomes in the meiotic prophase I using electron microscopy and immunocytochemical analysis. Unexpectedly, the sex chromosomes of the 52- and 60-chromosome forms of mole rats showed different synaptic and recombination patterns due to distinct locations of the centromeres on the Y chromosomes. The absence of recombination in the 60-chromosome form, the asymmetric synapsis, and the short-term disturbance in the synaptic co-orientation of the telomeric regions of the X and Y chromosomes were revealed as specific features of mole rat sex bivalents. We suggest several scenarios of Y chromosome alteration in connection with species differentiation in mole rats. [ABSTRACT FROM AUTHOR]

The article focuses on the study that determines the capability of blind mole rats to produce molecules that are believed to be DNA repairers. It offers brief details of the study and the methods used by the researchers. It also offers explanation of the result which indicates that Spalax rats have DNA repair capacity of hydrogen peroxide-induced lesions and hopes that the findings can offer hope of a genuine cure of cancer.

The article discusses a study by biologist Vera Gorbunova and others, on identification of potential therapies for cancer treatment lying within naked mole-rate (Heterocephalus glaber). It mentions that the research team at University of Haifa in Haifa, Israel has discovered that anti-cancer mechanism in blind mole rat involves malignant cells' selective destruction. Also presents views of cancer biologist Vadim Gladyshev and physiologist Rochelle Buffenstein.