32 results on '"Braems G"'
Search Results
2. The generation and use of recombinant extracellular vesicles as biological reference material
- Author
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Geeurickx, E. (Edward), Tulkens, J. (Joeri), Dhondt, B. (Bert), Van Deun, J. (Jan), Lippens, L. (Lien), Vergauwen, G. (Glenn), Heyrman, E. (Elisa), De Sutter, D. (Delphine), Gevaert, K. (Kris), Impens, F. (Francis), Miinalainen, I. (Ilkka), Van Bockstal, P.-J. (Pieter-Jan), De Beer, T. (Thomas), Wauben, M. H. (Marca H. M.), Nolte-‘t-Hoen, E. N. (Esther N. M.), Bloch, K. (Katarzyna), Swinnen, J. V. (Johannes V.), van der Pol, E. (Edwin), Nieuwland, R. (Rienk), Braems, G. (Geert), Callewaert, N. (Nico), Mestdagh, P. (Pieter), Vandesompele, J. (Jo), Denys, H. (Hannelore), Eyckerman, S. (Sven), De Wever, O. (Olivier), Hendrix, A. (An), Geeurickx, E. (Edward), Tulkens, J. (Joeri), Dhondt, B. (Bert), Van Deun, J. (Jan), Lippens, L. (Lien), Vergauwen, G. (Glenn), Heyrman, E. (Elisa), De Sutter, D. (Delphine), Gevaert, K. (Kris), Impens, F. (Francis), Miinalainen, I. (Ilkka), Van Bockstal, P.-J. (Pieter-Jan), De Beer, T. (Thomas), Wauben, M. H. (Marca H. M.), Nolte-‘t-Hoen, E. N. (Esther N. M.), Bloch, K. (Katarzyna), Swinnen, J. V. (Johannes V.), van der Pol, E. (Edwin), Nieuwland, R. (Rienk), Braems, G. (Geert), Callewaert, N. (Nico), Mestdagh, P. (Pieter), Vandesompele, J. (Jo), Denys, H. (Hannelore), Eyckerman, S. (Sven), De Wever, O. (Olivier), and Hendrix, A. (An)
- Abstract
Recent years have seen an increase of extracellular vesicle (EV) research geared towards biological understanding, diagnostics and therapy. However, EV data interpretation remains challenging owing to complexity of biofluids and technical variation introduced during sample preparation and analysis. To understand and mitigate these limitations, we generated trackable recombinant EV (rEV) as a biological reference material. Employing complementary characterization methods, we demonstrate that rEV are stable and bear physical and biochemical traits characteristic of sample EV. Furthermore, rEV can be quantified using fluorescence-, RNA- and protein-based technologies available in routine laboratories. Spiking rEV in biofluids allows recovery efficiencies of commonly implemented EV separation methods to be identified, intra-method and inter-user variability induced by sample handling to be defined, and to normalize and improve sensitivity of EV enumerations. We anticipate that rEV will aid EV-based sample preparation and analysis, data normalization, method development and instrument calibration in various research and biomedical applications.
- Published
- 2019
3. Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research
- Author
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Vergauwen, G. (Glenn), Dhondt, B. (Bert), Van Deun, J. (Jan), De Smedt, E. (Eva), Berx, G. (Geert), Timmerman, E. (Evy), Gevaert, K. (Kris), Miinalainen, I. (Ilkka), Cocquyt, V. (Véronique), Braems, G. (Geert), Van den Broecke, R. (Rudy), Denys, H. (Hannelore), De Wever, O. (Olivier), Hendrix, A. (An), Vergauwen, G. (Glenn), Dhondt, B. (Bert), Van Deun, J. (Jan), De Smedt, E. (Eva), Berx, G. (Geert), Timmerman, E. (Evy), Gevaert, K. (Kris), Miinalainen, I. (Ilkka), Cocquyt, V. (Véronique), Braems, G. (Geert), Van den Broecke, R. (Rudy), Denys, H. (Hannelore), De Wever, O. (Olivier), and Hendrix, A. (An)
- Abstract
Identification and validation of extracellular vesicle (EV)-associated biomarkers requires robust isolation and characterization protocols. We assessed the impact of some commonly implemented pre-analytical, analytical and post-analytical variables in EV research. Centrifugal filters with different membrane types and pore sizes are used to reduce large volume biofluids prior to EV isolation or to concentrate EVs. We compared five commonly reported filters for their efficiency when using plasma, urine and EV-spiked PBS. Regenerated cellulose membranes with pore size of 10 kDa recovered EVs the most efficient. Less than 40% recovery was achieved with other filters. Next, we analyzed the effect of the type of protein assays to measure EV protein in colorimetric and fluorometric kits. The fluorometric assay Qubit measured low concentration EV and BSA samples the most accurately with the lowest variation among technical and biological replicates. Lastly, we quantified Optiprep remnants in EV samples from density gradient ultracentrifugation and demonstrate that size-exclusion chromatography efficiently removes Optiprep from EVs. In conclusion, choice of centrifugal filters and protein assays confound EV analysis and should be carefully considered to increase efficiency towards biomarker discovery. SEC-based removal of Optiprep remnants from EVs can be considered for downstream applications.
- Published
- 2017
4. Safety of pre- or postoperative accelerated radiotherapy in 5 fractions: A randomized pilot trial
- Author
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Vakaet Vincent, MD, Van Hulle Hans, PhD, Van de Vijver Koen, Hilderson Ingeborg, Naert Eline, De Neve Wilfried, Vandorpe Jo, Hendrix An, Göker Menekse, Depypere Herman, Vergauwen Glenn, Van den Broecke Rudy, De Visschere Pieter, Braems Geert, Vandecasteele Katrien, Denys Hannelore, and Veldeman Liv
- Subjects
Breast cancer ,Neo-adjuvant radiotherapy ,Overall treatment time ,Feasibility ,Simultaneously integrated boost ,Accelerated radiotherapy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective: Neo-adjuvant radiotherapy (NART) for breast cancer has shown promising survival results in retrospective trials. However, there are some obstacles such as a chemotherapy delay, an increased overall treatment time (OTT) and the risk of increasing surgical morbidity. Accelerated radiotherapy (RT) in 5 fractions allows to deliver NART in a very short time span and minimizes the delay of surgery and chemotherapy. This trial investigates this NART schedule for safety, feasibility and OTT. Material and methods: Twenty patients eligible for neo-adjuvant chemotherapy (NACT) and breast conserving surgery, were randomized between NART before NACT or NACT and postoperative RT. In both arms, RT treatment was given in 5 fractions to the whole breast with a simultaneously integrated boost (SIB) on the tumor(bed). Lymph node irradiation was given concomitantly in case of lymph node involvement. OTT was defined as the time from diagnosis to last surgery in the intervention group, while in the control group the time between diagnosis and last RT-fraction was used. In the intervention group NACT-delay was defined as time between diagnosis and start of chemotherapy. Results: 20 patients were included, and 19 patients completed treatment. OTT was significantly shorter in the intervention group (mean 218 days, range 196–253) compared to the control group (mean 237, range 211–268, p = 0.001). The difference in mean duration from diagnosis to the first treatment was a non-significant 4 days longer (31 vs 27 days, p = 0.28), but the start of NACT after diagnosis was delayed by 21 days (48 vs 27 days, p
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- 2022
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5. Mesonephric adenocarcinoma of the cervix: Case report and literature review
- Author
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Dierickx, A., primary, Göker, M., additional, Braems, G., additional, Tummers, P., additional, and Van den Broecke, R., additional
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- 2016
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6. Effect of the secretory small GTPases Rab27B on breast cancer growth, invasion, and metastasis
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Hendrix, A., Maynard, D., Pauwels, P., Braems, G., Denys, H., Van den Broecke, R., Lambert, J., Van Belle, S., Cocquyt, V., Gespach, C., Bracke, M., Seabra, MC., Gahl, WA., De Wever, O., and Westbroek, W.
- Subjects
EXPRESSION ,GRISCELLI-SYNDROME ,MATRIX METALLOPROTEINASES ,HEPATOCELLULAR-CARCINOMA ,EXOCYTOSIS ,GRANULES ,SHOCK-PROTEIN 90 ,HSP90 ,MASS-SPECTROMETRY ,CELL-MIGRATION - Abstract
Methods Expression of green fluorescent protein (GFP) fused with wild-type Rab3D, Rab27A, or Rab27B, or Rab27B point mutants defective in GTP/GDP binding or geranylgeranylation, or transient silencing RNA to the same proteins was used to study Rab27B in estrogen receptor (ER)-positive human breast cancer cell lines (MCF-7, T47D, and ZR75.1). Cell cycle progression was evaluated by flow cytometry, western blotting, and measurement of cell proliferation rates, and invasion was assessed using Matrigel and native type I collagen substrates. Orthotopic tumor growth, local invasion, and metastasis were analyzed in mouse xenograft models. Mass spectrometry identified proinvasive growth regulators that were secreted in the presence of Rab27B. Rab27B protein levels were evaluated by immunohistochemistry in 59 clinical breast cancer specimens, and Rab3D, Rab27A, and Rab27B mRNA levels were analyzed by quantitative real-time polymerase chain reaction in 20 specimens. Statistical tests were two-sided.
- Published
- 2010
7. Stromal protein expression in breast cancer is differentially regulated by TGF-&bgr;1
- Author
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Van Bockstal, M., primary, Lambein, K., additional, Van Gele, M., additional, De Vlieghere, E., additional, Limame, R., additional, Braems, G., additional, Bracke, M., additional, Denys, H., additional, Libbrecht, L., additional, and De Wever, O., additional
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- 2015
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8. Expression of the small GTPase Rab27B is associated with stromal inflammation in ductal carcinoma in situ of the breast
- Author
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Van Bockstal, M., primary, Lambein, K., additional, De Wever, O., additional, Denys, H., additional, Braems, G., additional, Van den Broecke, R., additional, Cocquyt, V.F.J., additional, Bracke, M., additional, Libbrecht, L., additional, and Hendrix, A., additional
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- 2015
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9. The secretory small GTPase Rab27B as a marker for breast cancer progression
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Hendrix A, Braems G, Bracke M, Miguel Seabra, Gahl W, De Wever O, and Westbroek W
- Subjects
EXPRESSION ,MELANOCYTES ,GRISCELLI-SYNDROME ,PROTEINS ,Breast Neoplasms ,Prognosis ,GENE ,Gene Expression Regulation, Neoplastic ,Oncology ,Receptors, Estrogen ,rab GTP-Binding Proteins ,Lymphatic Metastasis ,METASTASIS ,CELLS ,Biomarkers, Tumor ,Disease Progression ,Medicine and Health Sciences ,Humans ,GROWTH ,Female ,Neoplasm Invasiveness ,Research Perspectives ,Signal Transduction - Abstract
In contemporary oncology practice, an urgent need remains to refine the prognostic assessment of breast cancer. It is still difficult to identify patients with early breast cancer who are likely to benefit from adjuvant chemotherapy. Although invasion of cancer cells is the main prognostic denominator in tumor malignancy, our molecular understanding and diagnosis are often inadequate to cope with this activity. Therefore, deciphering molecular pathways of how tumors invade and metastasize may help in the identification of a useful prognostic marker. We recently discovered that the secretory small GTPase Rab27B, a regulator of vesicle exocytosis, delivers proinvasive signals for increased invasiveness, tumor size, and metastasis of various estrogen receptor (ER)-positive breast cancer cell lines, both in vitro and in vivo. In human breast cancer specimens, the presence of Rab27B protein proved to be associated with a low degree of differentiation and the presence of lymph node metastasis in ER-positive breast cancer.
- Published
- 2010
10. Sonographisches Wachstum und Geburtsmaße einer türkischen Population in Deutschland im Vergleich zu einer mitteleuropäischen Population
- Author
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Braems, G., Lang, U., and Wolff, J.
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- 1989
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11. Stromal Characteristics are Potential Prognostic Markers for Ipsilateral Locoregional Recurrence in Ductal Carcinoma in Situ (DCIS)
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Van Bockstal, M., primary, Lambein, K., additional, De Wever, O., additional, Praet, M., additional, Cocquyt, V., additional, Van den Broecke, R., additional, Braems, G., additional, Denys, H., additional, and Libbrecht, L., additional
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- 2014
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12. P4-18-06: Relationship between Pathological Features, Her2 Protein Expression, and HER2 and CEP17 Copy Numbers in DCIS.
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Lambein, K, primary, Van, Bockstal M, additional, Praet, M, additional, Denys, H, additional, Braems, G, additional, Nuyts, A, additional, Cocquyt, V, additional, Pauwels, P, additional, Van, Den Broecke R, additional, and Libbrecht, L, additional
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- 2011
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13. 81P - Expression of the small GTPase Rab27B is associated with stromal inflammation in ductal carcinoma in situ of the breast
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Van Bockstal, M., Lambein, K., De Wever, O., Denys, H., Braems, G., Van den Broecke, R., Cocquyt, V.F.J., Bracke, M., Libbrecht, L., and Hendrix, A.
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- 2015
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14. 80P - Stromal protein expression in breast cancer is differentially regulated by TGF-&bgr;1
- Author
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Van Bockstal, M., Lambein, K., Van Gele, M., De Vlieghere, E., Limame, R., Braems, G., Bracke, M., Denys, H., Libbrecht, L., and De Wever, O.
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- 2015
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15. 25P - Stromal Characteristics are Potential Prognostic Markers for Ipsilateral Locoregional Recurrence in Ductal Carcinoma in Situ (DCIS)
- Author
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Van Bockstal, M., Lambein, K., De Wever, O., Praet, M., Cocquyt, V., Van den Broecke, R., Braems, G., Denys, H., and Libbrecht, L.
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- 2014
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16. R-037. Sonographic evaluation of the endometrium, serum oestradiol concentrations and pregnancy rate in patients undergoing ICSI and embryo transfer
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Manolopoulos, K., primary, Braems, G., additional, Hormel, P., additional, Stallf, T., additional, Zygmunt, M., additional, Lang, U., additional, Gips, H., additional, and Künzel, W., additional
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- 1997
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17. R-036. Is there a relationship between the sonographic evaluation of endometrium, serum oestradiol concentrations, ovarian stimulation and pregnancy rate in patients undergoing IVF and embryo transfer?
- Author
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Manolopoulos, K., primary, Braems, G., additional, Hormel, P., additional, Stallf, T., additional, Blank, T., additional, Zygmunt, M., additional, Lang, U., additional, Gips, H., additional, and Künzel, W., additional
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- 1997
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18. Differential regulation of proopiomelanocortin messenger ribonucleic acid in the pars distalis and pars intermedia of the pituitary gland after prolonged hypoxemia in fetal sheep.
- Author
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Braems, G A, primary, Matthews, S G, additional, and Challis, J R, additional
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- 1996
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19. Histologic tumor type as a determinant of survival in hormone receptor-positive, HER2-negative, pT1-3 invasive ductal and lobular breast cancer.
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Göker M, Denys H, Hendrix A, De Wever O, Van de Vijver K, and Braems G
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- Humans, Female, Treatment Outcome, Proportional Hazards Models, Prognosis, Retrospective Studies, Carcinoma, Lobular pathology, Breast Neoplasms pathology, Carcinoma, Ductal, Breast pathology
- Abstract
Purpose: The aim of the study was to compare the difference in survival between invasive ductal (IDC) and lobular carcinoma (ILC)., Methods: Data of patients (n = 1843) with a hormone receptor-positive, HER2-negative, pT1-3 IDC or ILC cancer without distant metastasis, treated at the Ghent University Hospital over the time period 2001-2015, were analyzed., Results: ILC represented 13.9% of the tumors, had a higher percentage of pT3 and pN3 stages than IDC, lymphovascular space invasion (LVSI) was less present and Ki-67 was mostly low. 73.9% of ILCs were grade 2, whereas IDC had more grade 1 and grade 3 tumors. Kaplan-Meier curves and log-rank testing showed a significant worse DFS for ILC with pN ≥ 1 than for their IDC counterpart. In a multivariable Cox regression analysis the histologic tumor type, ductal or lobular, was a determinant of DFS over 120 months (IDC as reference; hazard ratio for ILC 1.77, 95% CI 1.08-2.90) just as the ER Allred score (hazard ratio 0.84, 95% CI 0.78-0.91), LVSI (hazard ratio 1.75, 95% CI 1.12-2.74) and pN3 (hazard ratio 2.29, 95% CI 1.03-5.09). Determinants of OS over ten years were age (hazard ratio 1.05, 95% CI 1.02-1.07), LVSI (hazard ratio 3.62, 95% CI 1.92-6.82) and the ER Allred score (hazard ratio 0.80, 95% CI 0.73-0.89)., Conclusion: The histologic tumor type, ductal or lobular, determines DFS in hormone receptor-positive, HER2-negative, pT1-3 breast cancer besides the ER Allred score, LVSI and pN3., (© 2023. The Author(s).)
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- 2023
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20. Tumor-Infiltrating Lymphocytes and PD-L1 Expression in Pleomorphic Lobular Breast Carcinoma.
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Göker M, Deblaere S, Denys H, Vergauwen G, Naert E, Veldeman L, Monten C, Van den Broecke R, Van Dorpe J, Braems G, and Van de Vijver K
- Abstract
Background: The prognostic and predictive role of stromal tumor-infiltrating lymphocytes (sTILs) is undetermined in pleomorphic invasive lobular cancer (pILC). The same applies for the expression of PD-1/PD-L1 in this rare breast cancer subtype. Here, we aimed to investigate the expression of sTILs and analyze the PD-L1 expression levels in pILC., Methods: Archival tissues from sixty-six patients with pILC were collected. The sTIL density was scored as a percentage of tumor area using the following cut-offs: 0%; <5%; 5-9%; and 10-50%. The PD-L1 expression was analyzed using IHC on formalin-fixed, paraffin-embedded tissue sections using SP142 and 22C3 antibodies., Results: A total of 82% of the sixty-six patients were hormone receptor positive and 8% of cases were triple negative (TN), while 10% showed human epidermal growth factor receptor 2 (HER2) amplification. sTILs (≥1%) were present in 64% of the study population. Using the SP142 antibody, 36% of tumors demonstrated a positive PD-L1 score of ≥1%, and using the 22C3 antibody, 28% had a positive PD-L1 score of ≥1. There was no correlation between sTILs or PD-L1 expression and tumor size, tumor grade, nodal status, expression of estrogen receptor (ER), or amplification of HER2. Our data did not show any difference in survival between the three molecular subtypes of pILC with respect to sTILs and PD-L1 expression., Conclusion: This study shows that pILCs show some degree of sTILs and PD-L1 expression; however, this was not associated with a survival improvement. Additional large trials are needed to understand immune infiltration in lobular cancer, especially in the pleomorphic subtype.
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- 2023
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21. Genomic assays for lobular breast carcinoma.
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Göker M, Denys H, van de Vijver K, and Braems G
- Abstract
Background: One of the current challenges in breast cancer is the appropriate treatment of invasive lobular breast cancer (ILC) and defining the high-risk group within ILC. The biological character of ILC typically translates to a good prognosis, however, several studies have indicated that the long-term prognosis is worse than for patients diagnosed with the more commonly invasive ductal carcinoma. Many genomic tests are now available to determine whether those patients are at high risk (HR) and enable tailored treatment. Unfortunately, most of the studies in which these genomic tests have been evaluated entail retrospective analysis of a prospective trial., Aim: This review focuses on the validation of the available genomic assays based on trials performed in ILC patients, where in some instances, the various subtypes of ILC (classical, pleomorphic, and non-classic type) were taken into account., Results: Using Oncotype DX in retrospective studies, only 1.3%-8% of ILC tumors were categorized as HR tumors. For MammaPrint, 24% of patients were classified as HR, which was associated with poor outcome. In a recent sub-analysis of the MINDACT study comprising 487 ILC patients, 16.2% were high genomic risk. EndoPredict, Prosigna Breast Cancer Prognostic Gene Signature Assay, and the Breast Cancer Index have been validated in patients receiving only endocrine treatment., Conclusion: Although ILC accounts for the second most common breast cancer subtype in women, none of these tests encompass tumor morphology in their algorithms. Prospective studies on ILC with genomic assays are warranted given the various subtypes of and treatment options for this underestimated, but frequently occurring cancer., Relevance for Patients: Genomic assays can be employed in ILC patients to predict the risk of recurrence and identify those patients who might benefit from chemotherapy in addition to their standard treatment regimen., Competing Interests: The authors have no conflicts of interest to declare., (Copyright: © 2022 Author(s).)
- Published
- 2022
22. Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions.
- Author
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Vergauwen G, Tulkens J, Pinheiro C, Avila Cobos F, Dedeyne S, De Scheerder MA, Vandekerckhove L, Impens F, Miinalainen I, Braems G, Gevaert K, Mestdagh P, Vandesompele J, Denys H, De Wever O, and Hendrix A
- Subjects
- Biomarkers analysis, Breast Neoplasms blood, Breast Neoplasms chemistry, Chromatography, Gel, Female, HIV Infections blood, Humans, Ovarian Neoplasms blood, Ovarian Neoplasms chemistry, Centrifugation, Density Gradient methods, Chemical Fractionation methods, Extracellular Vesicles chemistry, Lipoproteins analysis, Plasma chemistry, Proteome
- Abstract
Separating extracellular vesicles (EV) from blood plasma is challenging and complicates their biological understanding and biomarker development. In this study, we fractionate blood plasma by combining size-exclusion chromatography (SEC) and OptiPrep density gradient centrifugation to study clinical context-dependent and time-dependent variations in the biomolecular landscape of systemically circulating EV. Using pooled blood plasma samples from breast cancer patients, we first demonstrate the technical repeatability of blood plasma fractionation. Using serial blood plasma samples from HIV and ovarian cancer patients (n = 10) we next show that EV carry a clinical context-dependent and/or time-dependent protein and small RNA composition, including miRNA and tRNA. In addition, differential analysis of blood plasma fractions provides a catalogue of putative proteins not associated with systemically circulating EV. In conclusion, the implementation of blood plasma fractionation allows to advance the biological understanding and biomarker development of systemically circulating EV., (© 2021 The Authors. Journal of Extracellular Vesicles published by Wiley Periodicals, LLC on behalf of the International Society for Extracellular Vesicles.)
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- 2021
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23. Feasibility study on pre or postoperative accelerated radiotherapy (POP-ART) in breast cancer patients.
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Van Hulle H, Vakaet V, Post G, Van Greveling A, Monten C, Hendrix A, Van de Vijver K, Van Dorpe J, De Visschere P, Braems G, Vandecasteele K, Denys H, De Neve W, and Veldeman L
- Abstract
Background: In early-stage breast cancer, the cornerstone of treatment is surgery. After breast-conserving surgery, adjuvant radiotherapy has shown to improve locoregional control and overall survival rates. The use of breast radiotherapy in the preoperative (preop) setting is far less common. Nevertheless, it might improve disease-free survival as compared to postoperative radiotherapy. There is also a possibility of downsizing the tumour which might lead to a lower need for mastectomy. There are some obstacles that complicate its introduction into daily practice. It may complicate surgery or lead to an increase in wound complications or delayed wound healing. Another fear of preop radiotherapy is delaying surgery for too long. At Ghent University Hospital, we have experience with a 5-fraction radiotherapy schedule allowing radiotherapy delivery in a very short time span., Methods: Twenty female breast cancer patients with non-metastatic disease receiving preop chemotherapy will be randomized between preop or postoperative radiotherapy. The feasibility of preop radiotherapy will be evaluated based on overall treatment time. All patients will be treated in 5 fractions of 5.7 Gy to the whole breast with a simultaneous integrated boost to the tumour/tumour bed of 5 × 6.2 Gy. In case of lymph node irradiation, the lymph node regions will receive a dose of 27 Gy in 5 fractions of 5.4 Gy. The total duration of therapy will be 10 to 12 days. In the preop group, overall treatment time is defined as the time between diagnosis and the day of last surgery, in the postop group between diagnosis and last irradiation fraction. Toxicity related to surgery, radio-, and chemotherapy will be evaluated on dedicated case-report forms at predefined time points. Tumour response will be evaluated on the pathology report and on MRI at baseline and in the interval between chemotherapy and surgery., Discussion: The primary objective of the trial is to investigate the feasibility of preop radiotherapy. Secondary objectives are to search for biomarkers of response and toxicity and identify the involved cell death mechanisms and the effect of preop breast radiotherapy on the in-situ immune micro-environment., Competing Interests: Competing interestsThis work is funded by Stand up to Cancer (Flemish Cancer Society)., (© The Author(s) 2020.)
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- 2020
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24. The generation and use of recombinant extracellular vesicles as biological reference material.
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Geeurickx E, Tulkens J, Dhondt B, Van Deun J, Lippens L, Vergauwen G, Heyrman E, De Sutter D, Gevaert K, Impens F, Miinalainen I, Van Bockstal PJ, De Beer T, Wauben MHM, Nolte-'t-Hoen ENM, Bloch K, Swinnen JV, van der Pol E, Nieuwland R, Braems G, Callewaert N, Mestdagh P, Vandesompele J, Denys H, Eyckerman S, De Wever O, and Hendrix A
- Subjects
- Biomarkers, Biomedical Research methods, Culture Media, Conditioned, HEK293 Cells, Humans, Extracellular Vesicles chemistry, Reference Standards
- Abstract
Recent years have seen an increase of extracellular vesicle (EV) research geared towards biological understanding, diagnostics and therapy. However, EV data interpretation remains challenging owing to complexity of biofluids and technical variation introduced during sample preparation and analysis. To understand and mitigate these limitations, we generated trackable recombinant EV (rEV) as a biological reference material. Employing complementary characterization methods, we demonstrate that rEV are stable and bear physical and biochemical traits characteristic of sample EV. Furthermore, rEV can be quantified using fluorescence-, RNA- and protein-based technologies available in routine laboratories. Spiking rEV in biofluids allows recovery efficiencies of commonly implemented EV separation methods to be identified, intra-method and inter-user variability induced by sample handling to be defined, and to normalize and improve sensitivity of EV enumerations. We anticipate that rEV will aid EV-based sample preparation and analysis, data normalization, method development and instrument calibration in various research and biomedical applications.
- Published
- 2019
- Full Text
- View/download PDF
25. Secretome analysis of breast cancer-associated adipose tissue to identify paracrine regulators of breast cancer growth.
- Author
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Lapeire L, Hendrix A, Lecoutere E, Van Bockstal M, Vandesompele J, Maynard D, Braems G, Van Den Broecke R, Müller C, Bracke M, Cocquyt V, Denys H, and De Wever O
- Subjects
- Antineoplastic Agents pharmacology, Cell Line, Tumor, Cell Proliferation drug effects, Cyclic AMP Response Element-Binding Protein metabolism, Female, Humans, Piperazines pharmacology, Protein Kinase Inhibitors pharmacology, Proteomics methods, Pyridines pharmacology, Transcription Factor AP-1 metabolism, Adipose Tissue metabolism, Adipose Tissue pathology, Breast Neoplasms metabolism, Breast Neoplasms pathology, Metabolomics methods, Paracrine Communication
- Abstract
Adipose tissue secretes a plethora of adipokines as evidenced by characterization of subcutaneous and visceral adipose tissue secretomes. However, adipose tissue composition and secretion pattern is depot and disease dependent, influencing the adipose tissue secretome. We investigated the secretome of cancer-associated adipose tissue (CAAT) explants from breast cancer patients and explored its role in breast cancer proliferation. CAAT proteins were identified by LC-MS/MS and human protein antibody arrays and stimulated proliferation of three breast cancer cell lines. Kinomics and transcriptomics of MCF-7 breast cancer cells treated with the secretome of CAAT revealed activation of Akt-, ERK- and JNK-pathways and differential expression of activator protein 1 (AP-1) and cAMP responsive element-binding protein (CREB) target genes. The cyclin-dependent kinase (CDK)4/6-inhibitor palbociclib significantly abrogated CAAT-enhanced breast cancer cell proliferation. Our work characterizes the specific breast CAAT protein secretome and reveals its pro-proliferative potency in breast cancer.
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- 2017
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26. Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research.
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Vergauwen G, Dhondt B, Van Deun J, De Smedt E, Berx G, Timmerman E, Gevaert K, Miinalainen I, Cocquyt V, Braems G, Van den Broecke R, Denys H, De Wever O, and Hendrix A
- Subjects
- Body Fluids metabolism, Chromatography, Gel, Culture Media, Conditioned, Extracellular Vesicles ultrastructure, Humans, MCF-7 Cells, Nanoparticles ultrastructure, Research, Extracellular Vesicles metabolism, Proteins analysis, Proteins metabolism, Ultrafiltration
- Abstract
Identification and validation of extracellular vesicle (EV)-associated biomarkers requires robust isolation and characterization protocols. We assessed the impact of some commonly implemented pre-analytical, analytical and post-analytical variables in EV research. Centrifugal filters with different membrane types and pore sizes are used to reduce large volume biofluids prior to EV isolation or to concentrate EVs. We compared five commonly reported filters for their efficiency when using plasma, urine and EV-spiked PBS. Regenerated cellulose membranes with pore size of 10 kDa recovered EVs the most efficient. Less than 40% recovery was achieved with other filters. Next, we analyzed the effect of the type of protein assays to measure EV protein in colorimetric and fluorometric kits. The fluorometric assay Qubit measured low concentration EV and BSA samples the most accurately with the lowest variation among technical and biological replicates. Lastly, we quantified Optiprep remnants in EV samples from density gradient ultracentrifugation and demonstrate that size-exclusion chromatography efficiently removes Optiprep from EVs. In conclusion, choice of centrifugal filters and protein assays confound EV analysis and should be carefully considered to increase efficiency towards biomarker discovery. SEC-based removal of Optiprep remnants from EVs can be considered for downstream applications.
- Published
- 2017
- Full Text
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27. The isolation of morphologically intact and biologically active extracellular vesicles from the secretome of cancer-associated adipose tissue.
- Author
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Jeurissen S, Vergauwen G, Van Deun J, Lapeire L, Depoorter V, Miinalainen I, Sormunen R, Van den Broecke R, Braems G, Cocquyt V, Denys H, and Hendrix A
- Subjects
- Extracellular Vesicles ultrastructure, Female, Humans, MCF-7 Cells, Ultracentrifugation, Adipose Tissue pathology, Breast Neoplasms metabolism, Breast Neoplasms pathology, Extracellular Vesicles metabolism, Proteome metabolism
- Abstract
Breast cancer cells closely interact with different cell types of the surrounding adipose tissue to favor invasive growth and metastasis. Extracellular vesicles (EVs) are nanometer-sized vesicles secreted by different cell types that shuttle proteins and nucleic acids to establish cell-cell communication. To study the role of EVs released by cancer-associated adipose tissue in breast cancer progression and metastasis a standardized EV isolation protocol that obtains pure EVs and maintains their functional characteristics is required. We implemented differential ultracentrifugation as a pre-enrichment step followed by OptiPrep density gradient centrifugation (dUC-ODG) to isolate EVs from the conditioned medium of cancer-associated adipose tissue. A combination of immune-electron microscopy, nanoparticle tracking analysis (NTA) and Western blot analysis identified EVs that are enriched in flotillin-1, CD9 and CD63, and sized between 20 and 200 nm with a density of 1.076-1.125 g/ml. The lack of protein aggregates and cell organelle proteins confirmed the purity of the EV preparations. Next, we evaluated whether dUC-ODG isolated EVs are functionally active. ZR75.1 breast cancer cells treated with cancer-associated adipose tissue-secreted EVs from breast cancer patients showed an increased phosphorylation of CREB. MCF-7 breast cancer cells treated with adipose tissue-derived EVs exhibited a stronger propensity to form cellular aggregates. In conclusion, dUC-ODG purifies EVs from conditioned medium of cancer-associated adipose tissue, and these EVs are morphologically intact and biologically active.
- Published
- 2017
- Full Text
- View/download PDF
28. Cancer-associated adipose tissue promotes breast cancer progression by paracrine oncostatin M and Jak/STAT3 signaling.
- Author
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Lapeire L, Hendrix A, Lambein K, Van Bockstal M, Braems G, Van Den Broecke R, Limame R, Mestdagh P, Vandesompele J, Vanhove C, Maynard D, Lehuédé C, Muller C, Valet P, Gespach CP, Bracke M, Cocquyt V, Denys H, and De Wever O
- Subjects
- Actins metabolism, Adipose Tissue pathology, Animals, Breast Neoplasms blood supply, Breast Neoplasms pathology, Cell Line, Tumor, Disease Progression, Female, Heterografts, Humans, MCF-7 Cells, Mice, Neovascularization, Pathologic metabolism, Neovascularization, Pathologic pathology, Paracrine Communication, Adipose Tissue metabolism, Breast Neoplasms metabolism, Janus Kinases metabolism, Oncostatin M metabolism, STAT3 Transcription Factor metabolism, Signal Transduction physiology
- Abstract
Increasing evidence supports the critical roles played by adipose tissue in breast cancer progression. Yet, the mediators and mechanisms are poorly understood. Here, we show that breast cancer-associated adipose tissue from freshly isolated tumors promotes F-actin remodeling, cellular scattering, invasiveness, and spheroid reorganization of cultured breast cancer cells. A combination of techniques, including transcriptomics, proteomics, and kinomics enabled us to identify paracrine secretion of oncostatin M (OSM) by cancer-associated adipose tissue. Specifically, OSM, expressed by CD45(+) leucocytes in the stromal vascular fraction, induced phosphorylation of STAT3 (pSTAT3-) Y705 and S727 in breast cancer cells and transcription of several STAT3-dependent genes, including S100 family members S100A7, S100A8, and S100A9. Autocrine activation of STAT3 in MCF-7 cells ectopically expressing OSM-induced cellular scattering and peritumoral neovascularization of orthotopic xenografts. Conversely, selective inhibition of OSM by neutralizing antibody and Jak family kinases by tofacitinib inhibited STAT3 signaling, peritumoral angiogenesis, and cellular scattering. Importantly, nuclear staining of pSTAT3-Y705 identified at the tumor invasion front in ductal breast carcinomas correlates with increased lymphovascular invasion. Our work reveals the potential of novel therapeutic strategies targeting the OSM and STAT3 axis in patients with breast cancer harboring nuclear pSTAT3-Y705., (©2014 American Association for Cancer Research.)
- Published
- 2014
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29. Differential regulation of extracellular matrix protein expression in carcinoma-associated fibroblasts by TGF-β1 regulates cancer cell spreading but not adhesion.
- Author
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Van Bockstal M, Lambein K, Van Gele M, De Vlieghere E, Limame R, Braems G, Van den Broecke R, Cocquyt V, Denys H, Bracke M, Libbrecht L, and De Wever O
- Abstract
Cancer progression is characterized by a complex reciprocity between neoplastic epithelium and adjacent stromal cells. In ductal carcinoma in situ (DCIS) of the breast, both reduced stromal decorin expression and myxoid stroma are correlated with increased recurrence risk. In this study, we aimed to investigate paracrine regulation of expression of decorin and related extracellular matrix (ECM) proteins in cancer-associated fibroblasts (CAFs). Transforming growth factor-β1 (TGF-β1) was identified as a competent ECM modulator, as it reduced decorin and strongly enhanced versican, biglycan and type I collagen expression. Similar but less pronounced effects were observed when fibroblasts were treated with basic fibroblast growth factor (bFGF). Despite this concerted ECM modulation, TGF-β1 and bFGF differentially regulated alpha-smooth muscle actin (α-SMA) expression, which is often proposed as a CAF-marker. Cancer cell-derived secretomes induced versican and biglycan expression in fibroblasts. Immunohistochemistry on twenty DCIS specimens showed a trend toward periductal versican overexpression in DCIS with myxoid stroma. Cancer cell adhesion was inhibited by decorin, but not by CAF-derived matrices. Cancer cells presented significantly enhanced spreading when seeded on matrices derived from TGF-β1-treated CAF. Altogether these data indicate that preinvasive cancerous lesions might modulate the composition of surrounding stroma through TGF-β1 release to obtain an invasion-permissive microenvironment.
- Published
- 2014
- Full Text
- View/download PDF
30. Use of tamoxifen before and during pregnancy.
- Author
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Braems G, Denys H, De Wever O, Cocquyt V, and Van den Broecke R
- Subjects
- Antineoplastic Agents, Hormonal administration & dosage, Antineoplastic Agents, Hormonal pharmacology, Female, Humans, Pregnancy, Pregnancy Outcome, Tamoxifen administration & dosage, Tamoxifen pharmacology, Abnormalities, Drug-Induced etiology, Antineoplastic Agents, Hormonal adverse effects, Breast Neoplasms drug therapy, Pregnancy Complications, Neoplastic drug therapy, Tamoxifen adverse effects
- Abstract
For premenopausal patients with receptor-positive early breast cancer, administration of tamoxifen for 5 years constitutes the main adjuvant endocrine therapy. During pregnancy, tamoxifen and its metabolites interact with rapidly growing and developing embryonic or fetal tissues. Information about tamoxifen and pregnancy was gathered by searching PubMed. In addition, we had access to the records of the pharmaceutical company AstraZeneca. Because these observations are retrospective and other therapies and diagnostic measures are possible confounders, a causal relationship was not established between tamoxifen treatment and pregnancy outcome. The records from AstraZeneca documented three live births with congenital anomalies and four live births without congenital anomalies related to tamoxifen treatment before pregnancy. Tamoxifen therapy during pregnancy resulted in 16 live births with congenital malformations and a total of 122 live births without malformations. The 122 live births without malformations included 85 patients from a prevention trial that did not record a single anomaly, whereas the AstraZeneca Safety Database alone reported 11 babies with congenital malformations of 44 live births. Additionally, there were: 12 spontaneous abortions, 17 terminations of pregnancy without known fetal defects, six terminations of pregnancy with fetal defects, one stillbirth without fetal defects, two stillbirths with fetal defects, and 57 unknown outcomes. The relatively high frequency of severe congenital abnormalities indicates that reliable birth control during tamoxifen treatment is mandatory. After tamoxifen use, a washout period of 2 months is advisable based on the known half-life of tamoxifen. In case of an inadvertent pregnancy, risks and options should be discussed.
- Published
- 2011
- Full Text
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31. Effect of the secretory small GTPase Rab27B on breast cancer growth, invasion, and metastasis.
- Author
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Hendrix A, Maynard D, Pauwels P, Braems G, Denys H, Van den Broecke R, Lambert J, Van Belle S, Cocquyt V, Gespach C, Bracke M, Seabra MC, Gahl WA, De Wever O, and Westbroek W
- Subjects
- Animals, Blotting, Western, Breast Neoplasms chemistry, Cell Cycle, Cell Line, Tumor, Cell Proliferation, Chromatography, Liquid, Female, Flow Cytometry, Gene Expression Regulation, Neoplastic, HSP90 Heat-Shock Proteins metabolism, Humans, Immunohistochemistry, In Situ Hybridization, Fluorescence, Mass Spectrometry, Mice, Mice, Nude, Neoplasm Invasiveness, Polymerase Chain Reaction, Prognosis, RNA, Messenger metabolism, Transplantation, Heterologous, Up-Regulation, rab GTP-Binding Proteins genetics, rab GTP-Binding Proteins immunology, rab27 GTP-Binding Proteins, rab3 GTP-Binding Proteins metabolism, Biomarkers, Tumor metabolism, Breast Neoplasms enzymology, Breast Neoplasms pathology, Receptors, Estrogen analysis, rab GTP-Binding Proteins metabolism
- Abstract
BACKGROUND Secretory GTPases like Rab27B control vesicle exocytosis and deliver critical proinvasive growth regulators into the tumor microenvironment. The expression and role of Rab27B in breast cancer were unknown. METHODS Expression of green fluorescent protein (GFP) fused with wild-type Rab3D, Rab27A, or Rab27B, or Rab27B point mutants defective in GTP/GDP binding or geranylgeranylation, or transient silencing RNA to the same proteins was used to study Rab27B in estrogen receptor (ER)-positive human breast cancer cell lines (MCF-7, T47D, and ZR75.1). Cell cycle progression was evaluated by flow cytometry, western blotting, and measurement of cell proliferation rates, and invasion was assessed using Matrigel and native type I collagen substrates. Orthotopic tumor growth, local invasion, and metastasis were analyzed in mouse xenograft models. Mass spectrometry identified proinvasive growth regulators that were secreted in the presence of Rab27B. Rab27B protein levels were evaluated by immunohistochemistry in 59 clinical breast cancer specimens, and Rab3D, Rab27A, and Rab27B mRNA levels were analyzed by quantitative real-time polymerase chain reaction in 20 specimens. Statistical tests were two-sided. RESULTS Increased expression of Rab27B promoted G(1) to S phase cell cycle transition, proliferation and invasiveness of cells in culture, and invasive tumor growth and hemorrhagic ascites production in a xenograft mouse model (n = 10; at 10 weeks, survival of MCF-7 GFP- vs GFP-Rab27B-injected mice was 100% vs 62.5%, hazard ratio = 0.26, 95% confidence interval = 0.08 to 0.88, P = .03). Mass spectrometric analysis of purified Rab27B-secretory vesicles identified heat-shock protein 90alpha as key proinvasive growth regulator. Heat-shock protein 90alpha secretion was Rab27B-dependent and was required for matrix metalloproteinase-2 activation. All Rab27B-mediated functional responses were GTP- and geranylgeranyl-dependent. Presence of endogenous Rab27B mRNA and protein, but not of Rab3D or Rab27A mRNA, was associated with lymph node metastasis (P < .001) and differentiation grade (P = .001) in ER-positive human breast tumors. CONCLUSIONS Rab27B regulates invasive growth and metastasis in ER-positive breast cancer cell lines, and increased expression is associated with poor prognosis in humans.
- Published
- 2010
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32. Ovine surfactant protein cDNAs: use in studies on fetal lung growth and maturation after prolonged hypoxemia.
- Author
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Braems GA, Yao LJ, Inchley K, Brickenden A, Han VK, Grolla A, Challis JR, and Possmayer F
- Subjects
- Amino Acid Sequence genetics, Animals, Apoproteins genetics, Base Sequence genetics, Cloning, Molecular, DNA, Complementary, Embryonic and Fetal Development, Fetal Organ Maturity, Fetus embryology, Fetus physiology, Insulin-Like Growth Factor Binding Proteins genetics, Molecular Probes, Molecular Sequence Data, Pulmonary Surfactants genetics, RNA, Messenger metabolism, Sheep embryology, Somatomedins genetics, Time Factors, Fetal Diseases physiopathology, Hypoxia physiopathology, Lung embryology, Pulmonary Surfactant-Associated Proteins, Pulmonary Surfactants metabolism
- Abstract
cDNAs for ovine surfactant-associated protein (SP) A, SP-B, and SP-C have been cloned and shown to possess strong similarity to cDNAs for surfactant apoproteins in other species. These reagents were employed to examine the effect of fetal hypoxia on the induction of surfactant apoprotein expression in the fetal lamb. Postnatal lung function is dependent on adequate growth and maturation during fetal development. Insulin-like growth factor (IGF) I and IGF-II, which are present in all fetal tissues studied, possess potent mitogenic and proliferative actions, and their effects can be modulated by IGF-specific binding proteins (IGFBPs). Hypoxia can lead to increases in circulating cortisol and catecholamines that can influence lung maturation. Therefore, the effects of mild hypoxia in chronically catheterized fetal lambs at gestational days 126-130 and 134-136 (term 145 days) on the expression of pulmonary surfactant apoproteins and IGFBPs were examined. Mild hypoxia for 48 h resulted in an increase in plasma cortisol that was more pronounced at later gestation, and in these animals, there was a twofold increase in SP-A mRNA. SP-B mRNA levels also increased twofold, but this was not significant. SP-C mRNA was not altered. No significant changes in apoprotein mRNA were observed with the younger fetuses. However, these younger animals selectively exhibited reduced IGFBP-5 mRNA levels. IGF-I mRNA was also reduced at 126-130 days, although this conclusion is tentative due to low abundance. IGF-II levels were not affected at either gestational age. We conclude that these data suggest that mild prolonged fetal hypoxia produces alterations that could affect fetal cellular differentiation early in gestation and can induce changes consistent with lung maturation closer to term.
- Published
- 2000
- Full Text
- View/download PDF
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