70 results on '"Bukhari SA"'
Search Results
2. Alveolar and Skeletal Chin Dimensions Associated with Lower Facial Height Among Different Divergent Patterns
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Bukhari Sa, Khan My, Sashidhar Nr, Kishore Ms, and Rachala Mr
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Mandibular symphysis ,Symphysis ,Clinical Biochemistry ,Dentistry ,lcsh:Medicine ,facial types ,03 medical and health sciences ,0302 clinical medicine ,Lower facial height ,medicine ,Lower face height ,cephalometry ,030212 general & internal medicine ,growth patterns ,Orthodontics ,business.industry ,lcsh:R ,030206 dentistry ,General Medicine ,Craniometry ,Skeleton (computer programming) ,Dentistry Section ,Chin ,medicine.anatomical_structure ,Analysis of variance ,mandibular symphysis ,business - Abstract
Introduction: Alveolar and skeletal chin dimensions with facial height have an impact on diagnosis and treatment planning in orthodontic patients and serves as a reference landmark for facial aesthetics. Aim: To evaluate the alveolar and skeleton chin dimensions among different divergent patterns, to evaluate the lower face height in different divergent growth patterns, to give an estimate to the oral surgeon for any adjunctive procedure. Materials and Methods: The study includes a total sample of 45 non-growing individuals (26 males and 19 females) from the archival records of the Orthodontic Department with age ranging between 18-25 years, classified into different divergent patterns based on the mandibular plane angle. The sample was divided into three groups, of which 15 patients in each group were evaluated: Group-1: Normodivergent, Group-2: Hypodivergent and Group-3: Hyperdivergent patterns respectively. Standardized digital lateral cephalograms and antero-posterior cephalograms of these patients were obtained in Natural Head Position (NHP). Results: The results of the retrospective cephalometeric study were statistically analyzed by using ANOVA and Tukey’s multiple post hoc test which showed that hard tissue chin measurement were greater in hypodivergent group (13.7mm) and the increased lower facial height showed statistically significant difference in high mandibular plane angle group (59.6mm). In antero-posterior cephalograms the transverse width showed statistically significant difference in normodivergent group (32.60mm). Conclusion: The anterio-posterior width of the symphysis was higher in hypodivergent growth pattern, whereas vertical height of the symphysis was greater in hyperdivergent group. The lower facial height among three groups showed statistically significant difference among hyperdivergent group. In comparison of all the three groups in Anterio-Posterior (AP) cephalograms, statistically significant difference was noted in normodivergent group when compared with the other two groups.
- Published
- 2016
3. Exploration of nutraceutical potential of herbal oil formulated from parasitic plant
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Anjum, F, Bukhari, SA, Shahid, M, Bokhari, TH, and Talpur, MMA
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Cuscuta reflexa, host plants, Hair fall, Dandruff, Combing assay, Herbal hair oil, Hair growth activity - Abstract
Background: Cuscuta reflexa (C. reflexa) is a parasitic climber of medicinal importance. The present study was aimed to evaluate the nutraceutical potential of C. reflexa stems collected from different hosts and to evaluate the role of the herbal formulation in dandruff, hair fall control as well as hair growth promoter.Materials and Methods: Hair formulations of C. reflexa collected from different host plants were prepared in the form of herbal oils (10% w/v). C. reflexa stems were extracted using mustard oil as base oil by using direct boiling technique. Prepared oil was studied as hair tonic. The experimental protocols used were anti-dandruff hair growth activity, as well as hair fall reduction. Herbal hair oils versus mustard oil were evaluated by applying oils on human volunteers with hair fall and dandruff problem whereas promotion of hair growth activity was conducted on rats. The formulated oils were also characterised for proximate analysis, physiochemical composition, as well as antimicrobial activity.Result: The test oils of C. reflexa collected from Azadiracta indica and Zizyphus jujuba were effective in the promotion of hair growth, dandruff control, as well as reduction in hair fall activity.Conclusion: All the formulated oils showed potent antimicrobial activity against all selected strains of bacteria and fungi.Keywords: Cuscuta reflexa, host plants, Hair fall, Dandruff, Combing assay, Herbal hair oil, Hair growth activity.
- Published
- 2013
4. DNA damage and plasma homocysteine levels are associated with serum metabolites and mineral constituents’ profiles in children with persistent diarrhea
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Bukhari, SA, Jalal, F, Nagra, SA, and Rajoka, MI
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Diarrhea, biochemistry, health marker, homocysteine, DNA damage - Abstract
This study describes the association between levels of DNA damage and homocysteine (Hcy) in persistent diarrheic (PD) patients and correlates them with serum biochemical metabolites and mineral components. PD patients (n = 36) age 4 - 6 years from Faisalabad hospitals were examined for anthropometric factors, plasma biochemical and mineral constituents. Compared to 36 normal controls, children with PD had significantly higher concentrations of LDL (p = 0.0001), ALT (p = 0.01),homocysteine (p = 0.001), TOS (p = 0.0001), TBARS (p = 0.001), K (p = 0.0001) and Mg (p = 0.0001) while serum triglyceride, total proteins, albumin, globulin, T3, T4, TAS, Na, Ca, Zn and Cu were significantlylower than those of healthy individuals. Both DNA damage and Hcy were positively linked with LDLcholesterol, TBARS and K (all p values < 0.05). Both Hcy profile and percentage DNA damage in PD patients may impart role in the endothelium damage even in the normal range. PD patients have severe deficiency of macro- and micro-nutrients which may have resulted in enhancement of oxidative stress, DNA damage and Hcy levels in patients’ plasma. Appropriate supplementation of macro- and micronutrients may decrease the DNA damage, Hcy levels and enhance the levels of health markers and decrease the mortality rate of PD patients.
- Published
- 2012
5. Efficacy of Novavit in ameliorating the neurotoxicity of propionic acid
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Bukhari Sarah I., Alfawaz Hanan, Al-Dbass Abeer, Bhat Ramesa Shafi, Moubayed Nadine MS, Bukhari Wadha, Hassan Sohair A., Merghani Nada, Elsamaligy Samar, and El-Ansary Afaf
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autism ,fatty acids ,oxidative stress ,gut microbiota ,novavit. ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Oxidative stress, abnormal fatty acid metabolism, and impaired gut microbiota play a serious role in the pathology of autism. The use of dietary supplements to improve the core symptoms of autism is a common therapeutic strategy. The present study analyzed the effects of oral supplementation with Novavit, a multi-ingredient supplement, on ameliorating oxidative stress and impaired lipid metabolism in a propionic acid (PPA)-induced rodent model of autism. Male western albino rats were divided into three groups. The first group is the control, the second group was given an oral neurotoxic dose of PPA (250 mg/kg body weight/day) for 3 days and then received buffered saline until the end of the experiment. The third group received Novavit (70 mg/kg body weight/day for 30 days after the 3-day PPA treatment). Markers of oxidative stress and impaired fatty acid metabolism were measured in brain homogenates obtained from each group. Novavit modulation of the gut microbiota was also evaluated. While PPA induced significant increases in lipid peroxides and 5-lipoxygenase, together with significantly decreased glutathione, and cyclooxygenase 2, oral supplementation with Novavit ameliorated PPA-induced oxidative stress and impaired fatty acid metabolism. Our results showed that the presence of multivitamins, coenzyme Q10, minerals, and colostrum, the major components of Novavit, protects against PPA-induced neurotoxicity.
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- 2020
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6. Manganese tetraphenylporphyrin and carbon nanocoil interface-based electrochemical sensing of tyrosine.
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Batool Bukhari SA, Aziz A, Nasir H, Ullah S, Akhtar T, Iram S, Sitara E, Mushtaq S, and Moiz SA
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Tyrosine is one of the essential metabolites present in the human body for nutritional maintenance and normal physiological functioning. Its concentration in the body is crucial in predicting various hereditary, emotional, and physiological disorders. Therefore, quantitative monitoring of tyrosine in clinical samples is indispensable. We state the use of carbon nanocoils/manganese tetraphenylporphyrin convened glassy carbon electrode (CNC/MnTPP/GC) for the streamlined electrochemical sensing of tyrosine. Cutting-edge analytical techniques were employed to perform a comprehensive physicochemical analysis of the synthesized materials. To investigate the electrochemical properties, various techniques such as cyclic voltammetry (CV), differential pulse voltammetry (DPV), electrochemical impedance spectroscopy, and chronocoulometry were employed. CNC/MnTPP/GC displayed an optimal response at pH 5 and exhibited remarkable linearity within the concentration range of 0.05 to 100 μM for tyrosine. Using DPV, it demonstrated a low limit of detection (21 nM ± 1.17) and a sensitivity of 0.12 μA μM
-1 cm-2 . CNC/MnTPP/GC displayed excellent performance in terms of repeatability, reproducibility, and stability for up to 30 days, making it suitable for real-time analysis, particularly in the analysis of tyrosine in blood serum. Notably, CNC/MnTPP/GC showcased a superior detection limit compared to previously reported methods., Competing Interests: We declare no financial conflict of interests., (This journal is © The Royal Society of Chemistry.)- Published
- 2024
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7. Incidence of cutaneous Leishmaniasis in humans during the COVID-19 pandemic in Baluchistan Province, Pakistan.
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Bukhari SA, Shafqat L, Bilal K, Hussain A, Gul S, Naz S, Shah NA, Dervišević E, Dervišević L, Ajanović Z, Manahil H, Aamir Ghafoor Chaudhary M, Wang Y, Ahmed H, and Cao J
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- Humans, Pakistan epidemiology, Female, Incidence, Male, Child, Child, Preschool, Adolescent, Adult, Infant, Young Adult, Middle Aged, Infant, Newborn, SARS-CoV-2, Aged, Leishmaniasis, Cutaneous epidemiology, COVID-19 epidemiology
- Abstract
Introduction: Cutaneous leishmaniasis (CL) is one of the neglected tropical diseases that affects impoverished communities throughout the world. In Pakistan CL is an endemic disease., Aims and Objectives: This study aimed to determine the incidence of CL infection in the Baluchistan province of Pakistan from January 2020 to March 2022 during the COVID-19 pandemic., Methodology: A total of 1047 clinically suspected cases of CL from Bolan Medical College Hospital, Quetta, were followed up in the study. The data regarding the epidemiological characterstics, pathological information, and treatment of patients was collected., Results: Out of 1047 probable cases of CL, 594 (56.73%) cases were found to be positive for CL. Females had the highest infection rate, with the majority of reported cases being in the 0-9-year age group. Most CL cases were reported in April in the year 2020, with a few cases reported in June. But in the year 2021, the highest number of cases were reported in December. The number of overall cases has gradually increased in the year 2022, most likely because of the reduction in COVID-19 pandemic restrictions. The p value for the positive as compared to suspected cases in the years 2020, 2021, and 2022 was calculated as 0.8925, 0.8763, and 0.8535 respectively., Conclusions: Further epidemiological studies and health education campaigns are recommended to increase public awareness. It is strongly advised that local, provincial, and national health authorities establish and maintain effective leishmaniasis surveillance systems to promptly identify disease outbreaks and implement timely control measures., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2024 Syeda Atiya Bukhari, Lamia Shafqat, Khawar Bilal, Ashiq Hussain, Shaista Gul, Shumaila Naz, Naseer Ali Shah, Emina Dervišević, Lejla Dervišević, Zurifa Ajanović, Hajra Manahil, Muhammad Aamir Ghafoor Chaudhary, Ying Wang, Haroon Ahmed, Jianping Cao.)
- Published
- 2024
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8. Network Pharmacology and Experimental Validation to Explore the Potential Mechanism of Nigella sativa for the Treatment of Breast Cancer.
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Arif R, Bukhari SA, Mustafa G, Ahmed S, and Albeshr MF
- Abstract
Breast cancer is a prevalent and potentially life-threatening disease that affects women worldwide. Natural products have gained attention as potential anticancer agents due to their fewer side effects, low toxicity, and cost effectiveness compared to traditional chemotherapy drugs. In the current study, the network pharmacology approach was used following a molecular docking study to evaluate the therapeutic potential of N. sativa -derived phytochemicals against breast cancer. Specifically, the study aimed to identify potential anticancer agents targeting key proteins implicated in breast cancer progression. Five proteins (i.e., EGFR, MAPK3, ESR1, MAPK1, and PTGS2) associated with breast cancer were selected as receptor proteins. Fourteen phytochemicals from N. sativa were prioritized based on drug-likeness (DL) and oral bioavailability (OB) parameters (with criteria set at DL > 0.18 and OB > 30%, respectively). Subsequent analysis of gene targets identified 283 overlapping genes primarily related to breast cancer pathogenesis. Ten hub genes were identified through topological analysis based on their significance in the KEGG pathway and GO annotations. Molecular docking revealed strong binding affinities between folic acid, betulinic acid, stigmasterol, and selected receptor proteins. These phytochemicals also demonstrated druggability potential. In vitro experiments in the MDA-MB-231 breast cancer cell line revealed that betulinic acid and stigmasterol significantly reduced cell viability after 24 h of treatment, confirming their anticancer activity. Furthermore, in vivo evaluation using a DMBA-induced rat model showed that betulinic acid and stigmasterol contributed to the significant recovery of cancer markers. This study aimed to explore the mechanisms underlying the anticancer potential of N. sativa phytochemicals against breast cancer, with the ultimate goal of identifying novel therapeutic candidates for future drug development. Overall, these results highlight betulinic acid and stigmasterol as promising candidates to develop novel anticancer agents against breast cancer. The comprehensive approach of this study, which integrates network pharmacology and molecular docking study and its experimental validation, strengthens the evidence supporting the therapeutic benefits of N. sativa -derived phytochemicals in breast cancer treatment, making them promising candidates for the development of novel anticancer agents against breast cancer., Competing Interests: The authors declare no conflicts of interest.
- Published
- 2024
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9. New genetic resources for aphid resistance were identified from a newly developed wheat mutant library.
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Zulfiqar S, Ishfaq S, Raza Bukhari SA, Sajjad M, Akhtar M, Liu D, and Rahman MU
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Reports on development of resilient wheat mutants to aphid infestation-causing heavy losses to wheat production in many parts of the world, are scanty. The present study aimed to identify genetic diversity of wheat mutants in terms of varying degree of resistance to aphid infestation which can help protect wheat crop, improve yields and enhance food security. Resistance response to aphid infestation was studied on newly developed 33 wheat mutants, developed through irradiating seed of an elite wheat cultivar "Punjab-11" with gamma radiations, during three normal growing seasons at two sites. Data on various traits including aphid count per plant, biochemical traits, physiological traits and grain yield was recorded. Meteorological data was also collected to unravel the impact of environmental conditions on aphid infestation on wheat plants. Minimum average aphid infestation was found on Pb- M -2725, Pb- M -2550, and Pb- M -2719 as compared to the wild type. High yielding mutants Pb- M -1323, Pb- M -59, and Pb- M -1272 supported the moderate aphid infestation. The prevailing temperature up to 25 °C showed positive correlation (0.25) with aphid count. Among biochemical traits, POD (0.34), TSP (0.33), TFA (0.324) exhibited a high positive correlation with aphid count. In addition, CAT (0.31), TSS (0.294), and proline content (0.293) also showed a positive correlation with aphid count. However, all physiological traits depicted negative correlation with aphid count, while, a very weak correlation (0.12) was found between mean aphid count and grain yield. In PCA biplots, the biochemical variables clustered together with aphid count, while physiological variables grouped with grain yield. Biochemical parameters contributed most, towards first dimension of the PCA (48.6%) as compared to the physiological variables (13%). The FAMD revealed that mutant lines were major contributor towards total variation; Pb- M -1027, Pb- M -1323, Pb- M -59 were found to be the most diverse lines. The PCA revealed that biochemical parameters played a significant role in explaining variations in aphid resistance, emphasizing their importance in aphid defense mechanisms. The identified mutants can be utilized by the international wheat community for getting insight into the molecular circuits of resistant mechanism against aphids as well as for designing new KASP markers. This study also highlights the importance of considering both genetic and environmental factors in the development of resilient wheat varieties and pave the way for further investigations into the molecular mechanisms underpinning aphid resistance in wheat., Competing Interests: The authors had no conflict of interest. Additionally, the funding agency did not play any role in planning experiments, data collection, explaining results, or writing the manuscript. The funders also had no role in making decisions regarding publishing the results., (© 2024 Published by Elsevier Ltd.)
- Published
- 2024
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10. In Silico identification of novel phytochemicals that target SFRP4: An early biomarker of diabesity.
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Rehman A, Bukhari SA, Akhter N, Ijaz Hussain MA, and Chauhdary Z
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- Humans, Molecular Docking Simulation, Insulin metabolism, Biomarkers, Obesity complications, Proto-Oncogene Proteins metabolism, Diabetes Mellitus, Type 2 complications
- Abstract
The simultaneous coexistence of complicated metabolic conditions like obesity and diabetes within an individual is known as diabesity. Obesity is the key factor for many chronic diseases, including insulin resistance and type 2 diabetes (T2D). Metabolic stress due to nutrient overload releases different inflammatory mediators. Secreted frizzled-related protein 4 (SFRP4) is also an inflammatory mediator that impairs insulin secretion. SFRP4 acts as an early biomarker for diabesity expressed with interleukin-1 beta (IL-1β) in the adipose tissues that hinder the exocytosis of insulin-secreting granules from the pancreatic β-cells and is a potential target for preserving β-cell dysfunction and the diabesity treatment. The current study aimed to screen potential bioactive compounds targeting and inhibiting the diabesity-linked SFRP4 protein through an in silico approach. The three-dimensional (3D) structure of human SFRP4 was predicted through comparative modeling techniques and evaluated by various online bioinformatics tools. The molecular docking and MD simulation investigations were carried out against phytochemicals with anti-diabetic and anti-obesity properties to shortlist the best SFRP4 inhibitor. Hesperetin, Curcumin, Isorhamnetin, Embelin, Epicatechin, and Methyl Eugenol interacted strongly with SFRP4 by displaying zero RMSD and binding affinities of -6.5, -6.4, -6.3, -5.3, -6.3 and -5.8 kcal/mol respectively. Additionally, the root mean square fluctuation and root mean square deviation graphs from the MD simulation results demonstrated that hesperetin has good variations throughout the simulation period as compared to others. This dynamic stability and control behavior of hesperetin, when it interacts with SFRP4, shows that it has the potential to modulate the function and activity of the protein. Therefore, hesperetin is identified as an effective and top drug candidate through this analysis for preserving beta-cell function and treating diabesity by targeting SFRP4. The findings of this study could be useful in the design and development of diabesity drugs., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Rehman et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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11. Quantitative estimate of cognitive resilience and its medical and genetic associations.
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Phongpreecha T, Godrich D, Berson E, Espinosa C, Kim Y, Cholerton B, Chang AL, Mataraso S, Bukhari SA, Perna A, Yakabi K, Montine KS, Poston KL, Mormino E, White L, Beecham G, Aghaeepour N, and Montine TJ
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- Humans, Female, Aged, Aged, 80 and over, Male, Apolipoprotein E4 genetics, Cognition, Cognitive Dysfunction diagnosis, Neurodegenerative Diseases, Alzheimer Disease pathology
- Abstract
Background: We have proposed that cognitive resilience (CR) counteracts brain damage from Alzheimer's disease (AD) or AD-related dementias such that older individuals who harbor neurodegenerative disease burden sufficient to cause dementia remain cognitively normal. However, CR traditionally is considered a binary trait, capturing only the most extreme examples, and is often inconsistently defined., Methods: This study addressed existing discrepancies and shortcomings of the current CR definition by proposing a framework for defining CR as a continuous variable for each neuropsychological test. The linear equations clarified CR's relationship to closely related terms, including cognitive function, reserve, compensation, and damage. Primarily, resilience is defined as a function of cognitive performance and damage from neuropathologic damage. As such, the study utilized data from 844 individuals (age = 79 ± 12, 44% female) in the National Alzheimer's Coordinating Center cohort that met our inclusion criteria of comprehensive lesion rankings for 17 neuropathologic features and complete neuropsychological test results. Machine learning models and GWAS then were used to identify medical and genetic factors that are associated with CR., Results: CR varied across five cognitive assessments and was greater in female participants, associated with longer survival, and weakly associated with educational attainment or APOE ε4 allele. In contrast, damage was strongly associated with APOE ε4 allele (P value < 0.0001). Major predictors of CR were cardiovascular health and social interactions, as well as the absence of behavioral symptoms., Conclusions: Our framework explicitly decoupled the effects of CR from neuropathologic damage. Characterizations and genetic association study of these two components suggest that the underlying CR mechanism has minimal overlap with the disease mechanism. Moreover, the identified medical features associated with CR suggest modifiable features to counteract clinical expression of damage and maintain cognitive function in older individuals., (© 2023. The Author(s).)
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- 2023
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12. Cross-species comparative analysis of single presynapses.
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Berson E, Gajera CR, Phongpreecha T, Perna A, Bukhari SA, Becker M, Chang AL, De Francesco D, Espinosa C, Ravindra NG, Postupna N, Latimer CS, Shively CA, Register TC, Craft S, Montine KS, Fox EJ, Keene CD, Bendall SC, Aghaeepour N, and Montine TJ
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- Humans, Animals, Mice, Cerebral Cortex, Lipid Metabolism, Macaca, Synaptic Transmission, Brain
- Abstract
Comparing brain structure across species and regions enables key functional insights. Leveraging publicly available data from a novel mass cytometry-based method, synaptometry by time of flight (SynTOF), we applied an unsupervised machine learning approach to conduct a comparative study of presynapse molecular abundance across three species and three brain regions. We used neural networks and their attractive properties to model complex relationships among high dimensional data to develop a unified, unsupervised framework for comparing the profile of more than 4.5 million single presynapses among normal human, macaque, and mouse samples. An extensive validation showed the feasibility of performing cross-species comparison using SynTOF profiling. Integrative analysis of the abundance of 20 presynaptic proteins revealed near-complete separation between primates and mice involving synaptic pruning, cellular energy, lipid metabolism, and neurotransmission. In addition, our analysis revealed a strong overlap between the presynaptic composition of human and macaque in the cerebral cortex and neostriatum. Our unique approach illuminates species- and region-specific variation in presynapse molecular composition., (© 2023. Springer Nature Limited.)
- Published
- 2023
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13. Comparison Of Exergaming And Vestibular Training On Gaze Stability, Balance And Gait Performance Of Older Adults: A Single Blind Randomized Control Trial.
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Bukhari SA, Ghous M, Butt P, Kiyani SK, and Tariq A
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- Humans, Aged, Single-Blind Method, Exergaming, Ear Diseases
- Published
- 2023
14. Niche partitioning by sympatric civets in the Himalayan foothills of Pakistan.
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Akrim F, Mahmood T, Belant JL, Nadeem MS, Qasim S, Dhendup T, Fatima H, Bukhari SA, Aslam A, Younis H, Rafique A, Subhani ZA, Hashmi SA, and Munawar N
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- Animals, Mice, Pakistan, Gerbillinae, Viverridae, Sympatry
- Abstract
Niche overlap between sympatric species can indicate the extent of interspecific competition. Sympatric competing species can exhibit spatial, temporal, and dietary adjustments to reduce competition. We investigated spatial, temporal, and dietary niche overlap of sympatric Asian palm civet ( Paradoxurus hermaphroditus ) and small Indian civet ( Viverricula indica ), in and around Pir Lasura National Park, Pakistan. We used remote cameras to determine the frequency and timing of detections to estimate spatial and temporal overlap, and prey remains from scats to estimate dietary overlap. We collected scat samples of Asian palm civet ( n = 108) and small Indian civet ( n = 44) for dietary analysis. We found low spatial ( O
ij = 0.32) and temporal (Δ = 0.39) overlap, but high dietary niche overlap (0.9) between these two civet species. Both civet species were detected at only 11 camera sites and small Indian civets were detected most frequently during 2:00-5:00 h and 8:00-10:00 h, whereas Asian palm civets detections were greatest during 20:00-2:00 h. The overall niche breadth of Asian palm civet was slightly narrower (L = 9.69, Lst = 0.31) than that of the small Indian civet (L = 10, Lst = 0.52). We identified 27 dietary items (15 plant, 12 animal) from scats of Asian palm civet including Himalayan pear ( Pyrus pashia; 27%), Indian gerbil ( Tatera indica; 10%), Rhesus monkey ( Macaca mulatta ; 4%), and insects (5%). Scat analysis of small Indian civets revealed 17 prey items (eight plant, nine animal) including Himalayan pear (24%), domestic poultry (15%), Indian gerbil (11%), and house mouse ( Mus musculus; 5%). Both civet species consumed fruits of cultivated orchard species. Spatial and temporal partitioning of landscapes containing diverse foods appears to facilitate coexistence between Asian palm civets and small Indian civets., Competing Interests: The authors declare that they have no competing interests., (© 2023 Akrim et al.)- Published
- 2023
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15. Hyaluronic acid-based nanofibers: Electrospun synthesis and their medical applications; recent developments and future perspective.
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Humaira, Raza Bukhari SA, Shakir HA, Khan M, Saeed S, Ahmad I, Muzammil K, Franco M, Irfan M, and Li K
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Hyaluronan is a biodegradable, biopolymer that represents a major part of the extracellular matrix and has the potential to be fabricated in a fibrous form conjugated with other polymers via electrospinning. Unique physicochemical features such as viscoelasticity, conductivity, and biological activity mainly affected by molecular weight attracted the attention of biomedical researchers to utilize hyaluronan for designing novel HA-based nano-devices. Particularly HA-based nanofibers get focused on a diverse range of applications in medical like tissue implants for regeneration of damaged tissue or organ repair, wound dressings, and drug delivery carriers to treat various disorders. Currently, electrospinning represents an effective available method for designing highly porous, 3D, HA-based nanofibers with features similar to that of the extra-cellular matrix making them a promising candidate for designing advanced regenerative medicines. This review highlights the structural and physicochemical features of HA, recently cited protocols in literature for HA production via microbial fermentation with particular focus on electrospun fabrication of HA-based nanofibers and parameters affecting its synthesis, current progress in medical applications of these electrospun HA-based nanofibers, their limitations and future perspective about the potential of these HA-based nanofibers in medical field., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Humaira, Raza Bukhari, Shakir, Khan, Saeed, Ahmad, Muzammil, Franco, Irfan and Li.)
- Published
- 2022
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16. Methylation differences in Alzheimer's disease neuropathologic change in the aged human brain.
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Lang AL, Eulalio T, Fox E, Yakabi K, Bukhari SA, Kawas CH, Corrada MM, Montgomery SB, Heppner FL, Capper D, Nachun D, and Montine TJ
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- Aged, 80 and over, Humans, Middle Aged, Aged, Amyloid beta-Peptides, Neuropathology, Brain, Plaque, Amyloid, DNA Methylation, Alzheimer Disease genetics
- Abstract
Alzheimer's disease (AD) is the most common cause of dementia with advancing age as its strongest risk factor. AD neuropathologic change (ADNC) is known to be associated with numerous DNA methylation changes in the human brain, but the oldest old (> 90 years) have so far been underrepresented in epigenetic studies of ADNC. Our study participants were individuals aged over 90 years (n = 47) from The 90+ Study. We analyzed DNA methylation from bulk samples in eight precisely dissected regions of the human brain: middle frontal gyrus, cingulate gyrus, entorhinal cortex, dentate gyrus, CA1, substantia nigra, locus coeruleus and cerebellar cortex. We deconvolved our bulk data into cell-type-specific (CTS) signals using computational methods. CTS methylation differences were analyzed across different levels of ADNC. The highest amount of ADNC related methylation differences was found in the dentate gyrus, a region that has so far been underrepresented in large scale multi-omic studies. In neurons of the dentate gyrus, DNA methylation significantly differed with increased burden of amyloid beta (Aβ) plaques at 5897 promoter regions of protein-coding genes. Amongst these, higher Aβ plaque burden was associated with promoter hypomethylation of the Presenilin enhancer 2 (PEN-2) gene, one of the rate limiting genes in the formation of gamma-secretase, a multicomponent complex that is responsible in part for the endoproteolytic cleavage of amyloid precursor protein into Aβ peptides. In addition to novel ADNC related DNA methylation changes, we present the most detailed array-based methylation survey of the old aged human brain to date. Our open-sourced dataset can serve as a brain region reference panel for future studies and help advance research in aging and neurodegenerative diseases., (© 2022. The Author(s).)
- Published
- 2022
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17. Single-cell spatial proteomic imaging for human neuropathology.
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Vijayaragavan K, Cannon BJ, Tebaykin D, Bossé M, Baranski A, Oliveria JP, Bukhari SA, Mrdjen D, Corces MR, McCaffrey EF, Greenwald NF, Sigal Y, Marquez D, Khair Z, Bruce T, Goldston M, Bharadwaj A, Montine KS, Angelo RM, Montine TJ, and Bendall SC
- Subjects
- Animals, Humans, Neuropathology, Hippocampus pathology, Microglia pathology, tau Proteins metabolism, Proteomics, Alzheimer Disease pathology
- Abstract
Neurodegenerative disorders are characterized by phenotypic changes and hallmark proteopathies. Quantifying these in archival human brain tissues remains indispensable for validating animal models and understanding disease mechanisms. We present a framework for nanometer-scale, spatial proteomics with multiplex ion beam imaging (MIBI) for capturing neuropathological features. MIBI facilitated simultaneous, quantitative imaging of 36 proteins on archival human hippocampus from individuals spanning cognitively normal to dementia. Customized analysis strategies identified cell types and proteopathies in the hippocampus across stages of Alzheimer's disease (AD) neuropathologic change. We show microglia-pathologic tau interactions in hippocampal CA1 subfield in AD dementia. Data driven, sample independent creation of spatial proteomic regions identified persistent neurons in pathologic tau neighborhoods expressing mitochondrial protein MFN2, regardless of cognitive status, suggesting a survival advantage. Our study revealed unique insights from multiplexed imaging and data-driven approaches for neuropathologic analysis and serves broadly as a methodology for spatial proteomic analysis of archival human neuropathology. TEASER: Multiplex Ion beam Imaging enables deep spatial phenotyping of human neuropathology-associated cellular and disease features., (© 2022. The Author(s).)
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- 2022
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18. HPLC-DAD analysis of Quercus leucotrichophora extract and appraisal of its antiasthmatic potential via modulation of aquaporins, inflammatory, and oxidative stress biomarkers in Albino mice.
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Saleem A, Najda A, Mubeen A, Akhtar MF, Bukhari SA, and Zeb A
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- Animals, Mice, Biomarkers metabolism, Bronchoalveolar Lavage Fluid chemistry, Catalase metabolism, Chromatography, High Pressure Liquid, Dexamethasone, Disease Models, Animal, Glucuronic Acid, Immunoglobulin E metabolism, Interleukin-4 metabolism, Lung, Malondialdehyde metabolism, Mice, Inbred BALB C, NF-kappa B metabolism, Ovalbumin pharmacology, Oxidative Stress, Quercetin pharmacology, Superoxide Dismutase metabolism, Tumor Necrosis Factor-alpha metabolism, Anti-Asthmatic Agents therapeutic use, Aquaporins, Asthma drug therapy, Catechin pharmacology, Quercus, Synthetic Drugs
- Abstract
Herbal drugs offer an alternative approach for the treatment of diseases like asthma due to low cost and comparatively less adverse effects in contrast to synthetic drugs. Leaves of Quercus leucotrichophora are traditionally used for the treatment of asthma. The study was aimed to assess the anti-asthmatic activity of Quercus leucotrichophora (QL) methanolic (QLME) and aqueous extracts (QLAE) in ovalbumin-(OVA) induced asthma and chemical characterization of QL extract by High Performance Liquid Chromatography-Diode array detector (HPLC-DAD). Animals were inoculated with OVA (i.p) on day 1 and 14 followed by intranasal challenge on 27th and 29th day. Both extracts of QL at 600, 300 and 150 mg/kg and dexamethasone (2 mg/kg) l were administered consecutively from days 15-26 via oral gavage. The QL extracts notably reduced (p < 0.0001-p < 0.05) total and differential leukocyte counts in blood and BALF and serum IgE levels in contrast to disease control. Both extracts and Dex substantially improved activities of superoxide dismutase, catalase, and GSH, while reduced malondialdehyde level in treated mice. Treatment with extracts and Dex caused significant (p < 0.0001-p < 0.05) downregulation of tumor necrosis factor-α, interleukin-4, - 5, - 13, - 6, - 1β, and NF-κB whereas, increased expression of Aquaporin (AQP) 1 and AQP5 in contrast to disease control. It was inferenced from findings that both extract of QL exhibited notable antiasthmatic potential might be due to presence of Daidzein-glucuronic acid, 3-Hydroxyphloretin 6'-hexoside, Catechin, Quercetin, and Kaemferol., Competing Interests: Conflict of interest statement The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
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- 2022
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19. Comparison of exergaming and vestibular training on gaze stability, balance, and gait performance of older adults: A single blind randomized control trial.
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Bukhari SA, Ghous M, Butt P, Kiyani SK, and Tariq A
- Subjects
- Humans, Male, Female, Aged, Middle Aged, Single-Blind Method, Postural Balance, Time and Motion Studies, Gait, Exergaming, Exercise Therapy methods
- Abstract
Objectives: To compare the effects of exergaming and vestibular training on gaze stability, balance and gait performance of older adults., Methods: The single-blind randomised controlled trial was conducted from August to October 2020 at the Doctor Raza Clinic, Swabi, Pakistan, and comprised individuals of both genders aged 60-75 years. The subjects were randomised into two groups using the sealed envelope method. Group 1 received exergaming, while group 2 received vestibular training 3 days a week for 6 weeks. The outcomes measures were dynamic gait index, time up and go test and non-instrumented dynamic visual acuity test. Data was analysed using SPSS 21., Results: Of the 24 subjects, 12(50%) were in each of the two groups. Overall, there were 16(66%) males and 8(33%) females with a mean age of 66.3±4.36 years. Intra-group improvement was significant compared to the baseline (p<0.05) in both the differences, but inter-group differences across all parameters were non-significant (p>0.05)., Conclusions: Both exergaming and vestibular training has similar effects on gaze stability, balance, and gait performance among the older adults. Clinical Trials.gov Identifier: NCT04414462.
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- 2022
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20. Semi-quantitative Assessment of Alzheimer's-like Pathology in Two Aged Polar Bears ( Ursus maritimus ).
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Lucot KL, Bukhari SA, Webber ED, Bonham TA, Darian-Smith C, Montine TJ, and Green SL
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- Adult, Aged, Amyloid beta-Peptides metabolism, Animals, Brain pathology, Humans, Neurofibrillary Tangles metabolism, Neurofibrillary Tangles pathology, Plaque, Amyloid pathology, Plaque, Amyloid veterinary, Alzheimer Disease pathology, Ursidae metabolism
- Abstract
Age-associated neurodegenerative changes, including amyloid β (Aβ) plaques, neurofibrillary tangles (NFTs), and amyloid angiopathy comparable to those seen in the brains of human patients with Alzheimer's disease (AD), have been reported in the brains of aged bears. However, the significance of these findings in bears is unclear due to the difficulty in assessing cognitive impairment and the lack of standardized approaches for the semiquantitative evaluation of Aβ plaques and NFTs. In this study, we evaluate the neuropathologic changes in archival brain tissue of 2 aged polar bears ( Ursus maritimus, ages 28 and 37) using the National Institute of Aging-Alzheimer Association (NIA-AA) consensus guidelines for the neuropathologic assessment of Alzheimer's Disease (AD). Both bears had an Aβ (A) score of 3 of 3, Braak stage (B score) of 2 of 3, and neuritic plaque (C) score of 3 of 3. These findings are consistent with the neurodegenerative changes observed in brains of patients with AD. The application of NIA-AA consensus guidelines, as applied to the neuropathologic assessment of the aged bears in this report, demonstrates the use of standardized semiquantitative assessment systems for comparative, translational studies of aging in a vulnerable wildlife species.
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- 2022
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21. Identification of Ascorbic Acid and Gallic Acid as Novel Inhibitors of Secreted Frizzled-Related Protein for the Treatment of Obesity-Induced Type 2 Diabetes.
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Bukhari SA, Yasmin A, Rasul A, Zahoor MA, Mustafa G, Al Farraj DA, Darwish NM, Aleya L, and Rehman A
- Abstract
Type 2 diabetes mellitus (T2D) has been reported as major public health issue rising at an alarming rate worldwide, and obesity is the leading risk factor for the development of T2D. Secreted frizzled-related protein 4 ( SFRP4 ) released with inflammatory mediators from adipose tissues constrains the exocytosis of insulin containing granules from the pancreatic islets that leads towards the development to T2D. The significant overexpression of SFRP4 in diabetic patients and its involvement in islet dysfunction suggest its critical role in the development of diabetes. Thus, this study was designed to explore the potential of ascorbic acid (AA) and gallic acid (GA) against SFRP4 for the treatment of diabetes. Molecular docking approach was used for the prediction of binding interactions of AA and GA at the active pocket of SFRP4 . Docking analysis indicated strong binding interactions of AA and GA to the amino acid residues at the active site of SFRP4 . A significant reduction in the level of SFRP4 was observed in transfected cells treated with AA and GA. For the evaluation of the cytotoxicity of AA and GA against HepG2 cells, MTT assay was performed. The results of MTT assay demonstrated that AA and GA are non-cytotoxic towards HepG2 cells at concentration of 15 μM. The oral administration of AA and GA to diet-induced obese mice caused significant reduction in body weight, blood glucose level, and SFRP4 expression. The results of this study suggest that AA and GA have potential for the treatment of obesity-induced T2D., Competing Interests: Declaration of Conflicting Interests: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article. Funding: The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: The current study is supported by Higher education commission (HEC), Pakistan NRPU research grant number 7345/Punjab/NRPU/R&D/HEC/2017., (© The Author(s) 2022.)
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- 2022
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22. Phylogenetic analyses, protein modeling and active site prediction of two pathogenesis related (PR2 and PR3) genes from bread wheat.
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Numan M, Bukhari SA, Rehman MU, Mustafa G, and Sadia B
- Subjects
- Catalytic Domain, Computer Simulation, DNA Mutational Analysis, Ligands, Molecular Docking Simulation, Phylogeny, Plant Diseases genetics, Plant Proteins chemistry, Plant Proteins metabolism, Polymerase Chain Reaction, Protein Conformation, Protein Structure, Secondary, Seeds metabolism, Triticum metabolism, Bread, Triticum genetics, Triticum microbiology
- Abstract
Wheat is a major staple food and has been extensively grown around the globe. Sessile nature of plants has exposed them to a lot of biotic and abiotic stresses including fungal pathogen attack. Puccinia graminis f.sp. tritici causes stem rust in the wheat crop and leads to 70% decrease in its production. Pathogenesis-related (PR) proteins provide plants with defense against different fungal pathogens as these proteins have antifungal activities. This study was designed to screen Pakistani wheat varieties for PR2 and PR3 proteins and their in silico characterization. PR2 and PR3 genes were screened and isolated by PCR amplification from wheat variety Chenab-70 and Frontana, respectively. The nucleotide sequences of PR2 and PR3 genes were deposited in GenBank with accession numbers MT303867 and MZ766118, respectively. Physicochemical properties, secondary and tertiary structure predictions, and molecular docking of protein sequences of PR2 and PR3 were performed using different bioinformatics tools and software. PR2 and PR3 genes were identified to encode β-1,3-glucanase and chitinase proteins, respectively. Molecular docking of both PR2 and PR3 proteins with beta-glucan and chitin (i.e. their respective ligands) showed crucial amino acid residues involved in molecular interactions. Conclusively, molecular docking analysis of β-1,3-glucanase and chitinase proteins revealed crucial amino acid residues which are involved in ligand binding and important interactions which might have important role in plant defense against fungal pathogens. Moreover, the active residues in the active sties of these proteins can be identified through mutational studies and resulting information might help understanding how these proteins are involved in plant defense mechanisms., Competing Interests: The authors have declared that they have no conflict of interest.
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- 2021
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23. Design of a novel multiple epitope-based vaccine: An immunoinformatics approach to combat SARS-CoV-2 strains.
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Naveed M, Tehreem S, Arshad S, Bukhari SA, Shabbir MA, Essa R, Ali N, Zaib S, Khan A, Al-Harrasi A, and Khan I
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- China, Computational Biology, Epitopes, B-Lymphocyte, Humans, Molecular Docking Simulation, Spike Glycoprotein, Coronavirus, COVID-19, SARS-CoV-2
- Abstract
Background: Since the SARS-CoV-2 outbreak in December 2019 in Wuhan, China, the virus has infected more than 153 million individuals across the world due to its human-to-human transmission. The USA is the most affected country having more than 32-million cases till date. Sudden high fever, pneumonia and organ failure have been observed in infected individuals., Objectives: In the current situation of emerging viral disease, there is no specific vaccine, or any therapeutics available for SARS-CoV-2, thus there is a dire need to design a potential vaccine to combat the virus by developing immunity in the population. The purpose of present study was to develop a potential vaccine by targeting B and T-cell epitopes using bioinformatics approaches., Methods: B- and T-cell epitopes are predicted from novel M protein-SARS-CoV-2 for the development of a unique multiple epitope vaccine by applying bioinformatics approaches. These epitopes were analyzed and selected for their immunogenicity, antigenicity scores, and toxicity in correspondence to their ability to trigger immune response. In combination to epitopes, best multi-epitope of potential immunogenic property was constructed. The epitopes were joined using EAAAK, AAY and GPGPG linkers., Results: The constructed vaccine showed good results of worldwide population coverage and promising immune response. This constructed vaccine was subjected to in-silico immune simulations by C-ImmSim. Chimeric protein construct was cloned into PET28a (+) vector for expression study in Escherichia coli using snapgene., Conclusion: This vaccine design proved effective in various computer-based immune response analysis as well as showed good population coverage. This study is solely dependent on developing M protein-based vaccine, and these in silico findings would be a breakthrough in the development of an effective vaccine to eradicate SARS-CoV-2 globally., (Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2021
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24. Anaotmical variability in the position of cystic artery during laparoscopic visualization.
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Fateh O, Wasi MSI, and Bukhari SA
- Subjects
- Cystic Duct diagnostic imaging, Cystic Duct surgery, Hepatic Artery, Humans, Bile Ducts, Extrahepatic, Cholecystectomy, Laparoscopic adverse effects, Laparoscopy
- Abstract
Background: The laparoscopic view of extrahepatic biliary tract and cystic artery is different anatomically from open approach. Consequently iatrogenic injuries due to inadverent damage to cystic artery are not uncommon. These complications can be prevented by careful dissection in Calots triangle and better knowledge of laparoscopic anatomy of cystic artery and its variations. The aim of this study is to establish the prevalence of variation in position of cystic artery in relation to cystic duct. This will help identify the safe area for dissecting peritoneum in Calots triangle and thus help young surgeons overcome the long learning curve associated with laparoscopy., Materials and Methods: During a 10 year period from January 2009 to January 2019, 1850 laparoscopic cholecystectomies that were performed at a tertiary care hospital were studied. Patients with history of previous abdominal surgery were excluded from the study. Cystic artery was divided into four groups based on its relative position to cystic duct. It includes superomedial, superolateral, anterior and absent cystic artery relative to the cystic duct., Results: Out of 1850 cases of laparoscopic cholecystectomy 1676 (90.59%) patients had cystic artery superomedial to cystic duct and 96 (5.19%) had a cystic artery at superolateral position to cystic duct. In 48 (2.59%) patients it was found anterior to cystic duct and in 30 (1.62%) patients it was absent., Conclusions: It is concluded that the most common position of cystic artery is superomedial while the least common position was found to be anterior to cystic duct. Hence it is postulated that blind dissection from anterior side is the safest approach to avoid injury to cystic artery.
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- 2021
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25. Mangifera indica Extracts as Novel PKM2 Inhibitors for Treatment of Triple Negative Breast Cancer.
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Rasul A, Riaz A, Wei W, Sarfraz I, Hassan M, Li J, Asif F, Adem Ş, Bukhari SA, Asrar M, and Li X
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- Antineoplastic Agents pharmacology, Cell Line, Tumor, Crystallography, X-Ray, Enzyme Inhibitors pharmacology, Female, Humans, Inhibitory Concentration 50, Kinetics, Plant Bark metabolism, Plant Leaves metabolism, Plasmids metabolism, Seeds metabolism, Tetrazolium Salts, Thiazoles, Thyroid Hormones, Triple Negative Breast Neoplasms enzymology, Thyroid Hormone-Binding Proteins, Carrier Proteins antagonists & inhibitors, Mangifera metabolism, Membrane Proteins antagonists & inhibitors, Plant Extracts pharmacology, Triple Negative Breast Neoplasms drug therapy
- Abstract
Pyruvate kinase (PK), a key enzyme that determines glycolytic activity, has been known to support the metabolic phenotype of tumor cells, and specific pyruvate kinase isoform M2 (PKM2) has been reported to fulfill divergent biosynthetic and energetic requirements of cancerous cells. PKM2 is overexpressed in several cancer types and is an emerging drug target for cancer during recent years. Therefore, this study was carried out to identify PKM2 inhibitors from natural products for cancer treatment. Based on the objectives of this study, firstly, plant extract library was established. In order to purify protein for the establishment of enzymatic assay system, pET-28a-HmPKM2 plasmid was transformed to E. coli BL21 (DE3) cells for protein expression and purification. After the validation of enzymatic assay system, plant extract library was screened for the identification of inhibitors of PKM2 protein. Out of 51 plant extracts screened, four extracts Mangifera indica (leaf, seed, and bark) and Bombex ceiba bark extracts were found to be inhibitors of PKM2. In the current study, M. indica (leaf, seed, and bark) extracts were further evaluated dose dependently against PKM2. These extracts showed different degrees of concentration-dependent inhibition against PKM2 at 90-360 μ g/ml concentrations. We have also investigated the anticancer potential of these extracts against MDA-MB231 cells and generated dose-response curves for the evaluation of IC
50 values. M. indica (bark and seed) extracts significantly halted the growth of MDA-MB231 cells with IC50 values of 108 μ g/ml and 33 μ g/ml, respectively. Literature-based phytochemical analysis of M. indica was carried out, and M. indica -derived 94 compounds were docked against three binding sites of PKM2 for the identification of PKM2 inhibitors. The results of in silico based screening have unveiled various PKM2 modulators; however, further studies are recommended to validate their PKM2 inhibitory potential via in vitro biochemical assay. The results of this study provide novel findings for possible mechanism of action of M. indica (bark and seed) extracts against TNBC via PKM2 inhibition suggesting that M. indica might be of therapeutic interest for the treatment of TNBC., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2021 Azhar Rasul et al.)- Published
- 2021
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26. Identification of Hearing Loss-Associated Variants of PTPRQ , MYO15A , and SERPINB6 in Pakistani Families.
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Mahmood U, Bukhari SA, Ali M, Ahmed ZM, and Riazuddin S
- Subjects
- Alleles, DNA Mutational Analysis, Family, Female, Humans, Male, Models, Molecular, Myosins chemistry, Pakistan, Pedigree, Phenotype, Receptor-Like Protein Tyrosine Phosphatases, Class 3 chemistry, Serpins chemistry, Genetic Predisposition to Disease, Hearing Loss genetics, Mutation genetics, Myosins genetics, Receptor-Like Protein Tyrosine Phosphatases, Class 3 genetics, Serpins genetics
- Abstract
The inner ear is an essential part of a well-developed and well-coordinated hearing system. However, hearing loss can make communication and interaction more difficult. Inherited hearing loss (HL) can occur from pathogenic genetic variants that negatively alter the intricate inner ear sensory mechanism. Recessively inherited forms of HL are highly heterogeneous and account for a majority of prelingual deafness. The current study is designed to investigate genetic causes of HL in three consanguineous Pakistani families. After IRB approval, the clinical history and pure tone audiometric data was obtained for the clinical diagnosis of HL segregating in these three Pakistani families. We performed whole exome sequencing (WES) followed by Sanger sequencing in order to identify and validate the HL-associated pathogenic variants, respectively. The 3-D molecular modeling and the Ramachandran analysis of the identified missense variants were compiled to evaluate the impact of the variants on the encoded proteins. Clinical evaluation revealed prelingual severe to profound sensorineural HL segregating among the affected individuals in all three families. Genetic analysis revealed segregation of several novel variants associated with HL, including a canonical splice-site variant (c.55-2A>G) of PTPRQ in family GCFHL-01, a missense variant [c.1079G>A; p.(Arg360Gln)] of SERPINB6 in family LUHL-01, and an insertion variant (c.10208-10211insCCACCAGGCCCGTGCCTC) within MYO15A in family LUHL-011. All the identified variants had very low frequencies in the control databases. The molecular modeling of p.Arg360Gln missense variant also predicted impaired folding of SERPINB6 protein. This study reports the identification of novel disease-causing variants in three known deafness genes and further highlights the genetic heterogeneity of HL in Pakistani population., Competing Interests: The writers announce no conflict of interest., (Copyright © 2021 Umair Mahmood et al.)
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- 2021
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27. Investigation of Hypoglycemic Peptides Derived from Conserved Regions of adMc1 to Reveal Their Antidiabetic Activities.
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Mahrosh HS, Mehmood R, Bukhari SA, Afzal G, and Arif R
- Subjects
- Diabetes Mellitus, Type 2 drug therapy, Diabetes Mellitus, Type 2 metabolism, Dipeptidyl-Peptidase IV Inhibitors therapeutic use, Humans, Hypoglycemic Agents therapeutic use, Peptides therapeutic use, Dipeptidyl Peptidase 4 chemistry, Dipeptidyl-Peptidase IV Inhibitors chemistry, Glucose Transporter Type 2 antagonists & inhibitors, Glucose Transporter Type 2 chemistry, Hypoglycemic Agents chemistry, Momordica charantia chemistry, Peptides chemistry, Plant Proteins chemistry, Sodium-Glucose Transporter 1 antagonists & inhibitors, Sodium-Glucose Transporter 1 chemistry
- Abstract
Diabetes mellitus is the most common chronic disorder and leading cause of renal, neurological, and gastrointestinal manifestations in developed and developing countries. Despite of many drugs and combinational therapies, the complications of diabetes are still listed due to severe consequences of those drugs. In past few years, plant-derived drugs draw special attention due to their higher efficacy and fewer side-effects. Momordica charantia also known as bitter melon is referred as an antidiabetic and hypoglycemic plant in native populations of Asia and East Africa. In current study, an in silico approach was used to evaluate the interactions and binding patterns of plant-derived peptides devised from a hypoglycemic protein adMc1 of M. charantia as potential inhibitor of DPP-IV, SGLT1, and GLUT2 receptor proteins. The study has described a novel approach to investigate hypoglycemic peptides to cure diabetes. A total of eighty tetra-, penta-, and hexapeptides were devised from conserved regions of adMc1 homologs. The molecular docking approach using MOE software was employed to reveal inhibiting potentials of devised peptides against three selected proteins. Out of 30 shortlisted ligands six peptides (i.e. SMCG, DECC, TTIT, RTTI, ARNL and TVEV) accomplished the criteria of being good drug candidates against selected receptor proteins following the drugability assessment test. The overall results are acceptable on the basis of ADMET profiling for being good drug candidates against selected proteins., Competing Interests: The authors declares that they have no conflicts of interest., (Copyright © 2021 Hafiza Salaha Mahrosh et al.)
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- 2021
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28. Effect of cutting depth during sugarcane (Saccharum spp. hybrid) harvest on root characteristics and yield.
- Author
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Yang SL, Zhang YB, Deng J, Li RD, Fan X, Dao JM, Quan YJ, and Hussain Bukhari SA
- Subjects
- China, Plant Roots metabolism, Saccharum metabolism, Soil, Agriculture methods, Plant Roots growth & development, Saccharum growth & development
- Abstract
Ratooning is an important cultivation practice in sugarcane production around the world, with underground buds on the remaining stalk acting as the source for establishment of a subsequent ratoon crop. However, the optimal depth of cutting during harvest in terms of yield and root growth remains unknown. We carried out a two-year field study to determine the effects of three cutting depths (0, 5 and 10 cm below the surface) ratoon cane root and yield. Results showed that cutting to a depth of 5 cm increased the root fresh weight and root volume by 21-59% and 41-127%, respectively, compared to cutting depths of 0 and 10 cm. Remarkably, cutting to a depth of 5 cm also had a significant effect on the development of fine roots, which is closely linked to cane yield. The effect was particularly noticeable in terms of two root traits, root volume and the surface area of roots with a diameter of 1.0-2.0mm, and root length and the number of root tips in roots with a diameter of 0-0.5mm. As a result, a cutting depth of 5 cm below the surface increased cane yield by 43 and 28% compared to depths of 0 and 10 cm below the surface, respectively. Overall, these findings suggest that a cutting depth of 5 cm is optimal in terms of sugarcane yield, largely due to the enhanced effect on root traits, especially the development of fine roots. These findings will help optimize sugarcane ratoon management and improve the ratoon cycle., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2021
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29. Cognitive Impairment in Older Adults and Therapeutic Strategies.
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Montine TJ, Bukhari SA, and White LR
- Subjects
- Aged, Humans, Alzheimer Disease, Cognitive Dysfunction drug therapy, Lewy Body Disease, Parkinson Disease
- Abstract
Cognitive impairment and its severe form dementia are increasingly prevalent in older adults and loom as a public health disaster unless effective interventions are developed. Cognitive impairment is a convergent trait caused by damage from an idiosyncratic mix of four prevalent diseases (Alzheimer disease; vascular brain injury; Lewy body diseases, such as Parkinson disease and dementia with Lewy bodies; and limbic-predominant age-related transactive response DNA-binding protein 43 encephalopathy) that is counterbalanced by individually varying resilience, which is comprised of reserve and compensation. Brain regional damage from each of these four prevalent diseases is generated by the net effect of injury and (mal)adaptive response and is accompanied by characteristic lesions. Existing therapeutics enhance resilience, whereas most agents under development target mechanisms of damage with only suppression of vascular brain injury yet to show therapeutic promise. We hope to anticipate future tailored interventions that target mechanisms of damage and thereby avert the oncoming surge of cognitive impairment and dementia in older adults. SIGNIFICANCE STATEMENT: Brain regional damage is generated by the net effect of injury and (mal)adaptive response. The extent to which signs and symptoms of such damage occur is influenced by an underlying resilience comprising reserve and compensation. Finding tailored interventions that target specific mechanisms of damage likely yields the most effective therapies., (Copyright © 2020 by The American Society for Pharmacology and Experimental Therapeutics.)
- Published
- 2021
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30. Effect of Surface and Interfacial Tension on the Resonance Frequency of Microfluidic Channel Cantilever.
- Author
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Abraham R, Khan F, Bukhari SA, Liu Q, Thundat T, Chung HJ, and Kim CI
- Abstract
The bending resonance of micro-sized resonators has been utilized to study adsorption of analyte molecules in complex fluids of picogram quantity. Traditionally, the analysis to characterize the resonance frequency has focused solely on the mass change, whereas the effect of interfacial tension of the fluid has been largely neglected. By observing forced vibrations of a microfluidic cantilever filled with a series of alkanes using a laser Doppler vibrometer (LDV), we studied the effect of surface and interfacial tension on the resonance frequency. Here, we incorporated the Young-Laplace equation into the Euler-Bernoulli beam theory to consider extra stress that surface and interface tension exerts on the vibration of the cantilever. Based on the hypothesis that the near-surface region of a continuum is subject to the extra stress, thin surface and interface layers are introduced to our model. The thin layer is subject to an axial force exerted by the extra stress, which in turn affects the transverse vibration of the cantilever. We tested the analytical model by varying the interfacial tension between the silicon nitride microchannel cantilever and the filled alkanes, whose interfacial tension varies with chain length. Compared with the conventional Euler-Bernoulli model, our enhanced model provides a better agreement to the experimental results, shedding light on precision measurements using micro-sized cantilever resonators.
- Published
- 2020
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31. Pathogenic variants of AIPL1, MERTK, GUCY2D, and FOXE3 in Pakistani families with clinically heterogeneous eye diseases.
- Author
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Rashid M, Qasim M, Ishaq R, Bukhari SA, Sajid Z, Ashfaq UA, Haque A, and Ahmed ZM
- Subjects
- Adolescent, Adult, Aged, Child, Eye Diseases pathology, Female, Humans, Male, Middle Aged, Pakistan, Pedigree, Phenotype, Adaptor Proteins, Signal Transducing genetics, Eye Diseases genetics, Forkhead Transcription Factors genetics, Guanylate Cyclase genetics, Mutation, Receptors, Cell Surface genetics, c-Mer Tyrosine Kinase genetics
- Abstract
Significant number out of 2.2 billion vision impairments in the world can be attributed to genetics. The current study is aimed to decipher the genetic basis of Leber congenital Amaurosis (LCA), Anterior Segment dysgenesis (ASD), and Retinitis Pigmentosa (RP), segregating in four large consanguineous Pakistani families. The exome sequencing followed by segregation analysis via Sanger sequencing revealed the LCA phenotypes segregating in families GCUF01 and GCUF04 can be attributed to c.465G>T (p.(Gln155His)) missense and novel c.139_140delinsA p.(Pro47Trhfster38) frameshift variant of AIPL1 and GUCY2D, respectively. The c.1843A>T (p.(Lys615*) truncating allele of MERTK is homozygous in all the affected individuals, presumably suffering with RP, of the GCUF02 family. Meanwhile, co-segregation of the ASD phenotype and the c.289A>G (p.(Ile97Val)) variant of FOXE3 was found in the GCUF06 family. All the identified variants were either absent or present in very low frequencies in the control databases. Our in-silico analyses and 3D molecular modeling support the deleterious impact of these variants on the encoded proteins. Variants identified in MERTK, GUCY2D, and FOXE3 were categorized as "pathogenic" or "likely pathogenic", while the missense variant found in AIPL1 was deemed to have "uncertain significance" based upon the variant pathogenicity guidelines from the American College of Medical Genetics and Genomics (ACMG). This paper highlights the genetic diversity of vision disorders in the Pakistani population and reports the identification of four novel mutations in families who segregate clinically heterogeneous eye diseases. Our results give insight into the genotype-phenotype correlations of AIPL1, FOXE3, MERTK, and GUCY2D variants., Competing Interests: No authors have competing interests.
- Published
- 2020
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32. Behavior-related gene regulatory networks: A new level of organization in the brain.
- Author
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Sinha S, Jones BM, Traniello IM, Bukhari SA, Halfon MS, Hofmann HA, Huang S, Katz PS, Keagy J, Lynch VJ, Sokolowski MB, Stubbs LJ, Tabe-Bordbar S, Wolfner MF, and Robinson GE
- Subjects
- Animals, Brain growth & development, Gene Expression Regulation, Developmental, Humans, Behavior, Brain physiology, Gene Regulatory Networks
- Abstract
Neuronal networks are the standard heuristic model today for describing brain activity associated with animal behavior. Recent studies have revealed an extensive role for a completely distinct layer of networked activities in the brain-the gene regulatory network (GRN)-that orchestrates expression levels of hundreds to thousands of genes in a behavior-related manner. We examine emerging insights into the relationships between these two types of networks and discuss their interplay in spatial as well as temporal dimensions, across multiple scales of organization. We discuss properties expected of behavior-related GRNs by drawing inspiration from the rich literature on GRNs related to animal development, comparing and contrasting these two broad classes of GRNs as they relate to their respective phenotypic manifestations. Developmental GRNs also represent a third layer of network biology, playing out over a third timescale, which is believed to play a crucial mediatory role between neuronal networks and behavioral GRNs. We end with a special emphasis on social behavior, discuss whether unique GRN organization and cis -regulatory architecture underlies this special class of behavior, and review literature that suggests an affirmative answer., Competing Interests: The authors declare no competing interest.
- Published
- 2020
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33. Nanostructured Lead Sulphide Depositions by AACVD Technique Using Bis(Isobutyldithiophosphinato)Lead(II) Complex as Single Source Precursor and Its Impedance Study.
- Author
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Iram S, Mahmood A, Sitara E, Batool Bukhari SA, Fatima SA, Shaheen R, and Azad Malik M
- Abstract
This communication reports the synthesis of bis(diisobutyldithiophosphinato)lead(II) complex and its subsequent application as a single source precursor for the nanostructured deposition of lead sulphide semiconductors and its impedance to explore its scope in the field of electronics. Synthesized complex was characterized by microelemental analysis, nuclear magnetic resonance spectroscopy, infrared spectroscopy and thermogravimetric analysis. This complex was decomposed using the aerosol-assisted chemical vapour deposition technique at different temperatures to grow PbS nanostructures on glass substrates. These nanostructures were analyzed by XRD, SEM, TEM and EDX methods. Impedance spectroscopic measurements were performed for PbS in the frequency range of 40 to 6 MHz at room temperature. In a complex impedance plane plot, two relaxation processes were exhibited due to grains and grain boundaries contribution. A high value of dielectric constant was observed at low frequencies, which was explained on the basis of Koops phenomenological model and Maxwell-Wagner type polarization. Frequency-dependent AC conductivity results were compliant with Jonscher power law, while capacitance-voltage loop had a butterfly shape. These impedance spectroscopic results have corroborated the ferroelectric nature of the resultant PbS nanodeposition.
- Published
- 2020
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34. Genetic transformation of Sr22 gene in a high yielding susceptible cultivar of commercial wheat ( Triticum aestivum L.).
- Author
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Bukhari SA, Mustafa G, Bashir S, Akram NA, Rahman MU, Sadia B, Alyemeni MN, and Ahmad P
- Abstract
In this study, the Sr22 gene was isolated and prepared for transformation in disease-susceptible commercial high-yielding wheat ( Triticum aestivum L.) cultivar Lasani-2008. The Sr22 fragment was initially inserted in plasmid pUC57 for sequence confirmation before performing further experiments. After confirmation, Sr22 was subcloned in pGreen0029 which helped in further cloning and ligation. pUC57- Sr22 was restricted with Nru 1 and Bam H1, while pGreen0029 was restricted with Eco RV and Bam H1 and ligated. From pGreen0029, Sr22 was eluted and ligated in pJIT163 to insert the 2 × 35S promoter and CaMV terminator using Xho 1 and Bam H1 and Sal 1. At this stage, the expression cassette was completed. The 2 × 35Sp- Sr22 -CaMVt was then ligated in pGreen0029 and transferred to Agrobacterium along with pSOUP. pSOUP helped pGreen0029 to insert 2X35Sp- Sr22 -CaMVt in the callus of Lasani-2008, along with kanamycin-resistant gene. Transgenic callus was used for regeneration of the whole plant by tissue culture. Transgenic plants were further tested by PCR, qPCR and SDS-PAGE. The transgenic Lasani-2008 showed substantial resistance against stem rust in both seedling and adult plant stages. The results also showed that transgenic Lasani-2008 has increased average yield of grains (i.e., 4893 ± 148 kg/ha) as compared to non-transgenic Lasani-2008 (i.e., with average yield of gains 4762 ± 103 kg/ha). Sr22 containing lines and the transgenic developed in this study can be used in breeding systems. Transgenic seeds developed will be shared with breeding institutes and breeders should use this information to develop new varieties., Competing Interests: Conflict of interestAuthors declare that no conflict of interest exists., (© King Abdulaziz City for Science and Technology 2020.)
- Published
- 2020
- Full Text
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35. Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation.
- Author
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Traniello IM, Bukhari SA, Kevill J, Ahmed AC, Hamilton AR, Naeger NL, Schroeder DC, and Robinson GE
- Subjects
- Agriculture, Animals, Brain physiopathology, Female, Gene Expression Regulation, Gene Regulatory Networks, Male, Pollination, RNA Virus Infections physiopathology, RNA-Seq, Social Behavior, Varroidae virology, Virus Diseases, Bees virology, Behavior, Animal, RNA Virus Infections veterinary, RNA Viruses, Viral Load
- Abstract
Crop pollination by the western honey bee Apis mellifera is vital to agriculture but threatened by alarmingly high levels of colony mortality, especially in Europe and North America. Colony loss is due, in part, to the high viral loads of Deformed wing virus (DWV), transmitted by the ectoparasitic mite Varroa destructor, especially throughout the overwintering period of a honey bee colony. Covert DWV infection is commonplace and has been causally linked to precocious foraging, which itself has been linked to colony loss. Taking advantage of four brain transcriptome studies that unexpectedly revealed evidence of covert DWV-A infection, we set out to explore whether this effect is due to DWV-A mimicking naturally occurring changes in brain gene expression that are associated with behavioral maturation. Consistent with this hypothesis, we found that brain gene expression profiles of DWV-A infected bees resembled those of foragers, even in individuals that were much younger than typical foragers. In addition, brain transcriptional regulatory network analysis revealed a positive association between DWV-A infection and transcription factors previously associated with honey bee foraging behavior. Surprisingly, single-cell RNA-Sequencing implicated glia, not neurons, in this effect; there are relatively few glial cells in the insect brain and they are rarely associated with behavioral plasticity. Covert DWV-A infection also has been linked to impaired learning, which together with precocious foraging can lead to increased occurrence of infected bees from one colony mistakenly entering another colony, especially under crowded modern apiary conditions. These findings provide new insights into the mechanisms by which DWV-A affects honey bee health and colony survival.
- Published
- 2020
- Full Text
- View/download PDF
36. Patient satisfaction with the implementation of electronic medical Records in the Western Region, Saudi Arabia, 2018.
- Author
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Wali RM, Alqahtani RM, Alharazi SK, Bukhari SA, and Quqandi SM
- Subjects
- Adult, Attention, Female, Humans, Male, Middle Aged, Saudi Arabia, Surveys and Questionnaires, Time Factors, Young Adult, Electronic Health Records, Patient Satisfaction, Physician-Patient Relations, Primary Health Care
- Abstract
Background: The implementation of the Electronic Medical Record (EMR) system initiated a significant transition in the healthcare system from traditional paper-based medical records to a digital version. Though EMR offers several benefits compared to Paper Medical Records (PMR), patient satisfaction with the EMR has been an area of concern. The objective of this study is to explore patient satisfaction with the EMR compared to the PMR of patients attending five Primary Healthcare Centers in the Western Region of Saudi Arabia., Methods: A cross-sectional survey was conducted with patients who attended five Primary Health Care centers (PHCs) in the Western Region during 2018. A sample of 377 participants was invited to complete a self-developed structured questionnaire with multiple choice and Likert Scale questions. The questionnaire was distributed to participants in the PHC waiting areas., Results: The sample size realized as (n = 377) participants, the majority (65.0%) were female. The overall patient satisfaction was 3.708. Patient satisfaction with the EMR was statistically significant compared to the PMR (3.7241 vs. 3.6919, p < 0.001). Several factors provided evidence of the overall satisfaction with the implementation of the EMR, including an increase in physician attention during the clinical consultation (82.3%), increased explanation of tests and medication (85.8%), increased time spent with the patient during the consultation (80.4%) and increased active listening by the physician (77.3%). Besides, the patients felt confident to ask the physician question related to health during clinical consultation (84.0%)., Conclusion: Patient satisfaction during the clinical consultation and overall satisfaction with various PHC services improved with the implementation of EMR.
- Published
- 2020
- Full Text
- View/download PDF
37. Exogenously Applied Ascorbic Acid-Mediated Changes in Osmoprotection and Oxidative Defense System Enhanced Water Stress Tolerance in Different Cultivars of Safflower ( Carthamus tinctorious L.).
- Author
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Farooq A, Bukhari SA, Akram NA, Ashraf M, Wijaya L, Alyemeni MN, and Ahmad P
- Abstract
The present study was conducted to examine the effect of exogenously applied ascorbic acid (AsA) on osmoprotectants and the oxidative defense system in four cultivars (16171, 16183, 16207 and 16246) of safflower under well-watered and water deficit conditions. Water stress (60% field capacity) significantly decreased the shoot and root fresh and dry weights, shoot and root lengths and chlorophyll contents in all four safflower cultivars, while it increased the leaf free proline, total phenolics, total soluble proteins, hydrogen peroxide content and activities of catalase, superoxide dismutase and peroxidase enzymes. Foliar-applied (100 mg L
-1 and 150 mg L- 1 ) ascorbic acid caused a marked improvement in shoot and root fresh and dry weights, plant height, chlorophyll and AsA contents as well as the activity of peroxidase (POD) enzyme particularly under water deficit conditions. It also increased the accumulation of leaf proline, total phenolics, total soluble proteins and glycine betaine (GB) content in all four cultivars. Exogenously applied AsA lowered the contents of MDA and H2 O2, and the activities of CAT and SOD enzymes. Overall, exogenously applied AsA had a positive effect on the growth of safflower plants under water deficit conditions which could be related to AsA-induced enhanced osmoprotection and regulation of antioxidant defense system., Competing Interests: The authors declare no conflict of interest.- Published
- 2020
- Full Text
- View/download PDF
38. Delineation of Homozygous Variants Associated with Prelingual Sensorineural Hearing Loss in Pakistani Families.
- Author
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Noman M, Ishaq R, Bukhari SA, Ahmed ZM, and Riazuddin S
- Subjects
- Adolescent, Adult, Aged, Child, Family, Female, Genetic Predisposition to Disease, Genetic Testing, Genetic Variation genetics, Homozygote, Humans, Male, Membrane Proteins genetics, Middle Aged, Neoplasm Proteins genetics, Pakistan epidemiology, Pedigree, Receptors, Estrogen genetics, Serine Endopeptidases genetics, Exome Sequencing methods, Deafness genetics, Hearing Loss genetics, Hearing Loss, Sensorineural genetics
- Abstract
Hearing loss is a genetically heterogeneous disorder affecting approximately 360 million people worldwide and is among the most common sensorineural disorders. Here, we report a genetic analysis of seven large consanguineous families segregating prelingual sensorineural hearing loss. Whole-exome sequencing (WES) revealed seven different pathogenic variants segregating with hearing loss in these families, three novel variants (c.1204G>A, c.322G>T, and c.5587C>T) in TMPRSS3, ESRRB, and OTOF , and four previously reported variants (c.208C>T, c.6371G>A, c.226G>A, and c.494C>T) in LRTOMT , MYO15A , KCNE1 , and LHFPL5 , respectively . All identified variants had very low frequencies in the control databases and were predicted to have pathogenic effects on the encoded proteins. In addition to being familial, we also found intersibship locus heterogeneity in the evaluated families. The known pathogenic c.226C>T variant identified in KCNE1 only segregates with the hearing loss phenotype in a subset of affected members of the family GCNF21. This study further highlights the challenges of identifying disease-causing variants for highly heterogeneous disorders and reports the identification of three novel and four previously reported variants in seven known deafness genes., Competing Interests: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.
- Published
- 2019
- Full Text
- View/download PDF
39. Neurogenomic insights into paternal care and its relation to territorial aggression.
- Author
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Bukhari SA, Saul MC, James N, Bensky MK, Stein LR, Trapp R, and Bell AM
- Subjects
- Animals, Behavior, Animal physiology, Brain physiology, Evolution, Molecular, Genomics, Male, Mice, Reproduction, Smegmamorpha genetics, Social Behavior, Transcription Factors genetics, Aggression physiology, Fathers, Genetics, Behavioral, Paternal Behavior physiology, Smegmamorpha physiology, Territoriality
- Abstract
Motherhood is characterized by dramatic changes in brain and behavior, but less is known about fatherhood. Here we report that male sticklebacks-a small fish in which fathers provide care-experience dramatic changes in neurogenomic state as they become fathers. Some genes are unique to different stages of paternal care, some genes are shared across stages, and some genes are added to the previously acquired neurogenomic state. Comparative genomic analysis suggests that some of these neurogenomic dynamics resemble changes associated with pregnancy and reproduction in mammalian mothers. Moreover, gene regulatory analysis identifies transcription factors that are regulated in opposite directions in response to a territorial challenge versus during paternal care. Altogether these results show that some of the molecular mechanisms of parental care might be deeply conserved and might not be sex-specific, and suggest that tradeoffs between opposing social behaviors are managed at the gene regulatory level.
- Published
- 2019
- Full Text
- View/download PDF
40. Purification and modification of Cordia myxa gum to enhance its nutraceutical attribute as binding agent.
- Author
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Tahir MF, Bukhari SA, Anjum F, Qasim M, Anwar H, and Naqvi SAR
- Subjects
- Drug Compounding, Plant Gums chemistry, Solubility, Cordia chemistry, Dietary Supplements, Plant Gums isolation & purification, Tablets chemistry
- Abstract
The aim of the present study was to purify, hydrolyze and modify the Cordia myxa gum to document its binder potential in pharmaceutical tablets formulation. The hydrolysis and modification was carried out to remove impurities, roughness, increase thermal stability and to improve the functional properties of biopolymers. Physiochemical properties such as pH, solubility, viscosity, swelling index, bulk and tapped density was performed prior to investigate binder potential. The binder potential of Cordia myxa gum was studied in its different forms such as crude, purified, modified and hydrolyzed in paracetamol tablets and was compared with standard hydroxypropyl methylcellulose (HPMC) being used as synthetic binder. Tablets were prepared by direct compression method and evaluated for weight uniformity, hardness, friability, disintegration time and dissolution analysis. Prepared tablets with selected gums exhibit faster and slower dissolution profile in the same dissolution system. The crude gum has high dissolution rate whereas the hydrolyzed and modified gums showed less dissolution rate. The hydrolyzed and modified gums having faster release rate and it could be helpful in conventional tablet formulations efficiently as compared to synthetic HPMC binder.
- Published
- 2019
41. Enhancement of nutraceutical and antioxidant potential of sunflower hybrid seed varieties through chemical priming.
- Author
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Den NZU, Mustafa G, Bukhari SA, Anjum F, Qasim M, and Shahid M
- Subjects
- Anti-Bacterial Agents pharmacology, Dietary Supplements, Escherichia coli drug effects, Flavonoids pharmacology, Microbial Sensitivity Tests methods, Phenols pharmacology, Plants, Medicinal chemistry, Staphylococcus aureus drug effects, Antioxidants pharmacology, Helianthus chemistry, Plant Extracts pharmacology, Seeds chemistry
- Abstract
Pathogenic agents cause an increased risk of various fatal diseases and there is a need to reduce this risk using medicinal plants and their seeds. The present research work was designed to study the efficacy of different sunflower seed hybrid varieties (i.e. FH622, FH620, FH615, FH613 and FH545) chemically primed with potassium nitrate as natural antioxidant and antimicrobial agent. Antioxidant potential was determined using DPPH test, reducing power, TPC and TFC. Antibacterial activity was determined against Gram positive and Gram negative bacterial species. After one week, the germination data including mean germination and percentage of final emergence was calculated. It was found that seed varieties FH620 and FH615 have higher values of mean germination as compared to FH545 while FH615 has higher percentage of final emergence as compared to FH620 and FH545. High phenolic and flavonoid contents were observed in FH620 and FH615 as compared to FH545 variety. It was also observed that seed variety FH615 when treated with KNO3 solution had significantly high germination as well as antioxidant parameters and antibacterial activity as compared to other varieties. Similarly FH615 showed high antibacterial activities against Gram positive Staphylococcus aureus and Gram-negative Escherichia coli bacteria. This study showed that all selected sunflower hybrids have good antioxidant and antibacterial potentials that would further be used for different trials to cure different pathogen related diseases, and these are natural sources of antioxidants for commercial and therapeutic applications.
- Published
- 2019
42. Identities and frequencies of variants in CYP1B1 causing primary congenital glaucoma in Pakistan.
- Author
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Rashid M, Yousaf S, Sheikh SA, Sajid Z, Shabbir AS, Kausar T, Tariq N, Usman M, Shaikh RS, Ali M, Bukhari SA, Waryah AM, Qasim M, Riazuddin S, and Ahmed ZM
- Subjects
- Adolescent, Adult, Aged, Alleles, Amino Acid Sequence, Amino Acid Substitution, Child, Child, Preschool, Consanguinity, DNA Mutational Analysis, Female, Gene Expression, Gene Frequency, Glaucoma congenital, Glaucoma pathology, Glaucoma surgery, Humans, Infant, Latent TGF-beta Binding Proteins genetics, Male, Middle Aged, Pakistan, Pedigree, Sequence Alignment, Trabeculectomy methods, Cytochrome P-450 CYP1B1 genetics, Genetic Heterogeneity, Glaucoma genetics, Mutation
- Abstract
Purpose: Primary congenital glaucoma (PCG) is a clinically and genetically heterogeneous disease. The present study was undertaken to find the genetic causes of PCG segregating in 36 large consanguineous Pakistani families., Methods: Ophthalmic examination including fundoscopy, or slit-lamp microscopy was performed to clinically characterize the PCG phenotype. Genomic nucleotide sequences of the CYP1B1 and LTBP2 genes were analyzed with either Sanger or whole exome sequencing. In silico prediction programs were used to assess the pathogenicity of identified alleles. ClustalW alignments were performed to determine evolutionary conservation, and three-dimensional (3D) modeling was performed using HOPE and Phyre2 software., Results: Among the known loci, mutations in CYP1B1 and LTBP2 are the common causes of PCG. Therefore, we analyzed the genomic nucleotide sequences of CYP1B1 and LTBP2 , and detected probable pathogenic variants cosegregating with PCG in 14 families. These included the three novel (c.542T>A, c.1436A>G, and c.1325delC) and five known (c.868dupC, c.1168C>T, c.1169G>A, c.1209InsTCATGCCACC, and c.1310C>T) variants in CYP1B1 . Two of the novel variants are missense substitutions [p.(Leu181Gln), p.(Gln479Arg)], which replaced evolutionary conserved amino acids, and are predicted to be pathogenic by various in silico programs, while the third variant (c.1325delC) is predicted to cause reading frameshift and premature truncation of the protein. A single mutation, p.(Arg390His), causes PCG in six (~43%) of the 14 CYP1B1 mutations harboring families, and thus, is the most common variant in this cohort. Surprisingly, we did not find any LTBP2 pathogenic variants in the families, which further supports the genetic heterogeneity of PCG in the Pakistani population., Conclusions: In conclusion, results of the present study enhance our understanding of the genetic basis of PCG, support the notion of a genetic modifier of CYP1B1 , and contribute to the development of genetic testing protocols and genetic counseling for PCG in Pakistani families.
- Published
- 2019
43. Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge.
- Author
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Saul MC, Blatti C, Yang W, Bukhari SA, Shpigler HY, Troy JM, Seward CH, Sloofman L, Chandrasekaran S, Bell AM, Stubbs L, Robinson GE, Zhao SD, and Sinha S
- Subjects
- Animals, Bees, Brain metabolism, Brain physiology, Female, Gene Regulatory Networks, Genome, Male, Mice, Smegmamorpha, Transcriptome, Evolution, Molecular, Genetics, Behavioral methods, Genomics methods, Social Behavior, Systems Analysis
- Abstract
Social challenges like territorial intrusions evoke behavioral responses in widely diverging species. Recent work has showed that evolutionary "toolkits"-genes and modules with lineage-specific variations but deep conservation of function-participate in the behavioral response to social challenge. Here, we develop a multispecies computational-experimental approach to characterize such a toolkit at a systems level. Brain transcriptomic responses to social challenge was probed via RNA-seq profiling in three diverged species-honey bees, mice and three-spined stickleback fish-following a common methodology, allowing fair comparisons across species. Data were collected from multiple brain regions and multiple time points after social challenge exposure, achieving anatomical and temporal resolution substantially greater than previous work. We developed statistically rigorous analyses equipped to find homologous functional groups among these species at the levels of individual genes, functional and coexpressed gene modules, and transcription factor subnetworks. We identified six orthogroups involved in response to social challenge, including groups represented by mouse genes Npas4 and Nr4a1, as well as common modulation of systems such as transcriptional regulators, ion channels, G-protein-coupled receptors and synaptic proteins. We also identified conserved coexpression modules enriched for mitochondrial fatty acid metabolism and heat shock that constitute the shared neurogenomic response. Our analysis suggests a toolkit wherein nuclear receptors, interacting with chaperones, induce transcriptional changes in mitochondrial activity, neural cytoarchitecture and synaptic transmission after social challenge. It shows systems-level mechanisms that have been repeatedly co-opted during evolution of analogous behaviors, thus advancing the genetic toolkit concept beyond individual genes., (© 2018 John Wiley & Sons Ltd and International Behavioural and Neural Genetics Society.)
- Published
- 2019
- Full Text
- View/download PDF
44. Dengue death tolls: A nightmare for Khyber Pakhtunkhwa, Pakistan.
- Author
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Naveed M, Chaudhry Z, Bukhari SA, Awan I, and Khalid N
- Subjects
- Humans, Pakistan epidemiology, Dengue mortality
- Published
- 2018
- Full Text
- View/download PDF
45. Phenolic acid profiling and antiglycation studies of leaf and fruit extracts of tyrosine primed Momordica charantia seeds for possible treatment of diabetes mellitus.
- Author
-
Farah N, Bukhari SA, Ali M, Naqvi SA, and Mahmood S
- Subjects
- Humans, Hydroxybenzoates therapeutic use, Hypoglycemic Agents therapeutic use, Plant Extracts isolation & purification, Plant Extracts therapeutic use, Plant Leaves drug effects, Seeds drug effects, Spectrophotometry, Ultraviolet methods, Diabetes Mellitus drug therapy, Diabetes Mellitus metabolism, Fruit drug effects, Hydroxybenzoates isolation & purification, Hypoglycemic Agents isolation & purification, Momordica charantia drug effects, Tyrosine pharmacology
- Abstract
The increasing risk of variety of fatal diseases including diabetes mellitus is imposing serious challenge to chemist, biologists and clinicians. Due to the side effects of the chemotherapy, worldwide it is thinking that phyto-medicine are more effective to cope continuously increasing risk of fatal diseases without any side effect. Seed priming is a strategic pre-sowing semi-bioengineering technique which has ability to improve the growth rate and biologically active compounds in short time. Among seed priming techniques, tyrosine seed priming most frequently used because amino acids provide best growth media for nutritional food crops. Seeds of Momordica charantia were subjected to the pre-sowing tyrosine solution. Different growth parameters including growth emergence rate, seedling vigor, growth and weight of root, shoot and leaf were studied. The results showed positive effect on Momordica charantia seed growth and phenolic acids production i.e. ferulic acid - 43.95 ppm and sinapic acid - 18.39 ppm. The antiglycation assay showed 23.45±1.23% antiglycation activity of primed-seed fruit extract as compare to control seed fruit extract (0.87±0.03%). On the basis of the results, it is concluded that tyrosine primed seed fruit extract could effectively be further tested for pre-clinical and clinical studies to manage diabetes mellitus disease.
- Published
- 2018
46. Use of Patient's Own Natural Teeth as Part of the Interim Prosthesis on Immediately Placed Single Implants in a Staged Surgical Approach: A Clinical Report.
- Author
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Bukhari SA, AlHelal A, Proussaefs P, Garbacea A, and Kattadiyil MT
- Subjects
- Crowns, Dental Implantation, Endosseous, Humans, Osseointegration, Tooth Crown, Dental Implants, Single-Tooth, Dental Prosthesis, Implant-Supported, Tooth Extraction
- Abstract
A technique is described where the tooth's natural crown is used as part of the interim implant supported prosthesis in clinical situations where a tooth with poor prognosis is extracted and an implant is placed immediately after tooth extraction. A preliminary impression is made before tooth extraction, and the exact tooth positioning is assessed in the laboratory as part of the treatment plan. An acrylic resin repositioning jig is fabricated that will guide the clinician in seating and orienting the crown intraorally after implant placement is completed. After the natural tooth is extracted and an implant is immediately placed via guided approach, the extracted natural crown is hollowed and placed on top of an interim abutment. The natural crown is positioned intraorally by using the acrylic resin repositioning jig. The crown is then internally relined and placed as part of the interim implant supported prosthesis. After osseointegration has been confirmed, a definitive prosthesis is placed.
- Published
- 2018
- Full Text
- View/download PDF
47. The thalamic reticular nucleus in schizophrenia and bipolar disorder: role of parvalbumin-expressing neuron networks and oxidative stress.
- Author
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Steullet P, Cabungcal JH, Bukhari SA, Ardelt MI, Pantazopoulos H, Hamati F, Salt TE, Cuenod M, Do KQ, and Berretta S
- Subjects
- Animals, Bipolar Disorder metabolism, Brain physiopathology, Female, GABAergic Neurons metabolism, Hippocampus metabolism, Humans, Male, Mice, Mice, Knockout, Nerve Net metabolism, Oxidative Stress physiology, Parvalbumins metabolism, Parvalbumins physiology, Schizophrenia metabolism, Thalamus physiopathology, Bipolar Disorder physiopathology, Schizophrenia physiopathology, Thalamic Nuclei physiopathology
- Abstract
Growing evidence points to a disruption of cortico-thalamo-cortical circuits in schizophrenia (SZ) and bipolar disorder (BD). Clues for a specific involvement of the thalamic reticular nucleus (TRN) come from its unique neuronal characteristics and neural connectivity, allowing it to shape the thalamo-cortical information flow. A direct involvement of the TRN in SZ and BD has not been tested thus far. We used a combination of human postmortem and rodent studies to test the hypothesis that neurons expressing parvalbumin (PV neurons), a main TRN neuronal population, and associated Wisteria floribunda agglutinin-labeled perineuronal nets (WFA/PNNs) are altered in SZ and BD, and that these changes may occur early in the course of the disease as a consequence of oxidative stress. In both disease groups, marked decreases of PV neurons (immunoreactive for PV) and WFA/PNNs were observed in the TRN, with no effects of duration of illness or age at onset. Similarly, in transgenic mice with redox dysregulation, numbers of PV neurons and WFA/PNN+PV neurons were decreased in transgenic compared with wild-type mice; these changes were present at postnatal day (P) 20 for PV neurons and P40 for WFA/PNN+PV neurons, accompanied by alterations of their firing properties. These results show profound abnormalities of PV neurons in the TRN of subjects with SZ and BD, and offer support for the hypothesis that oxidative stress may play a key role in impacting TRN PV neurons at early stages of these disorders. We put forth that these TRN abnormalities may contribute to disruptions of sleep spindles, focused attention and emotion processing in these disorders.
- Published
- 2018
- Full Text
- View/download PDF
48. Phylogeny and comparative modeling of phytochelatin synthase from Chlorella sp. as an efficient bioagent for detoxification of heavy metals.
- Author
-
Bukhari SA, Tahir MF, Akhter N, Anjum F, Anwar H, and Mustafa G
- Subjects
- Aminoacyltransferases chemistry, Phylogeny, Aminoacyltransferases metabolism, Chlorella vulgaris enzymology, Environmental Restoration and Remediation, Evolution, Molecular, Metals, Heavy metabolism
- Abstract
Phytochelatins (PCs) found extensively in algae and plants are important for detoxification of heavy metals from soil and wastewater, and their synthesis is mediated by an enzyme phytochelatin synthase (PCS). In this study, a phylogram was generated to study evolutionary relationships of PCS from various organisms. It was revealed that PCS from green algae and plants are orthologs as both have evolved from a common ancestor. PCS from cyanobacteria appeared in two different clades showing that they have followed different lineages during evolution. Structural modeling was also carried out by building a 3D model of PCS from Chlorella variabilis using software Modeller v9.16. The predicted structure will be helpful for protein engineering strategies and to understand its interactions with other proteins. The biological biosorption capacity of Chlorella vulgaris (a green alga) was determined to remove Cd, Cu and Pb from industrial effluents. The biosorption of three heavy metals from industrial waste water was investigated under various conditions like pH, biomass concentration, contact time and temperature. Bio-removal of heavy metals was carried out by exposing culture of C. vulgaris to water samples of different heavy metal concentrations. The decrease in Cd, Cu and Pb quantities after 1 to 7 days of incubation period were 83%, 84% and 82.5%, respectively. In view of this, Chlorella spp. could be used on a large scale to detoxify heavy metals and clean up contaminated environments.
- Published
- 2018
49. Post interferon therapy decreases male fertility through gonadotoxic effect.
- Author
-
Bukhari SA, Ahmed MM, Anjum F, Anwar H, Naqvi SAR, Zahra T, and Batool U
- Subjects
- Adult, Follicle Stimulating Hormone antagonists & inhibitors, Follicle Stimulating Hormone blood, Hepatitis C blood, Hepatitis C diagnosis, Hepatitis C drug therapy, Humans, Infertility, Male diagnosis, Luteinizing Hormone antagonists & inhibitors, Luteinizing Hormone blood, Male, Middle Aged, Sperm Motility physiology, Testosterone antagonists & inhibitors, Testosterone blood, Young Adult, Antiviral Agents adverse effects, Infertility, Male blood, Infertility, Male chemically induced, Interferons adverse effects, Sperm Motility drug effects
- Abstract
Prevalence of hepatitis C virus (HCV) has been seen in more than 15% of Pakistani population. For the treatment of this infection, only two medicines, interferon, and ribavirin were approved in 1998. The concerned physicians evaluate side effects of these two antiviral drugs only during the treatment period. The long-term extra hepatic side effects are being neglected. This retrospective study was conducted with reference to induced infertility in HCV treated 40 male patients from the period 2008-2015. Possible effects of interferon therapy on fertility hormones and seminal parameters were assessed. Level of fertility hormones like serum Follicle Stimulating Hormone (FSH), Luteinizing Hormone (LH), and testosterone was measured. For seminal parameters, guidelines from World Health Organization (WHO) were followed. Among forty cases of HCV patients who received interferon, only 14 (35%) have children and 26 (65%) could not conceive (p = 0.0372). After HCV treatment, HCV positive patients showed a significant change in the level of FSH, LH (p<0.05). Especially, it decreased testosterone level (p=0.0096). Similarly, HCV treatment significantly decreased sperm count (p=0.001) and motility (p=0.0005).
- Published
- 2018
50. Structural and functional annotation of citrate synthase from Aspergillus niger ANJ-120.
- Author
-
Mustafa G, Arif R, Bukhari SA, Ali M, Sharif S, and Atta A
- Subjects
- Chemical Phenomena, Amino Acid Sequence, Aspergillus niger, Citrate (si)-Synthase chemistry, Molecular Conformation, Protein Structure, Secondary, Structural Homology, Protein
- Abstract
Citrate synthase (CS) is involved in citric acid biosynthesis which is a well-established metabolic pathway. The condensation of acetyl-CoA with oxaloacetate is catalyzed by CS. Citric acid (CA) has a number of applications in pharmaceutical industry. CA in combination with bicarbonates is used as an effervescent in the preparations of tablets and powders. It has also been used as an anticoagulant and acidulant to form mild astringent. In current study, detailed structural and functional analyses of CS protein were carried out using various bioinformatics tools. Structural modeling was also done by building 3D model of CS from Aspergillus niger ANJ-120 using Modeller 9.16 software. The 3D Model was then evaluated using different online approaches. Furthermore, superimposition of query and template structures, Root Mean Squared Deviation and visualization of generated model were done through UCSF Chimera 1.5.3. Even though various roles of CS protein were already known and verified experimentally, here we presented a structural analysis of CS protein. The structural investigation of CS protein will be helpful for protein engineering strategies and understanding the interactions among proteins. Due to large number of applications, the production of citric acid by A. niger and its bioinformatics studies will offer substantial improvement in commercial scale intensification of this useful product.
- Published
- 2018
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