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7 results on '"Dagdigian, Chris"'

1. The bioperl toolkit: perl modules for the life sciences

Author

Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, Fuellen, Georg, Gilbert, James G.R., Korf, Ian, Lapp, Hilmar, Lehvaslaiho, Heikki, Matsalla, Chad, Mungall, Chris J., Osborne, Brian I., Pocock, Matthew R., Schattner, Peter, Senger, Martin, Stein, Lincoln D., Stupka, Elia, Wilkinson, Mark D., and Birney, Ewan

Subjects
Program development software -- Design and construction, Genomes -- Analysis, Electronic data processing -- Methods, Genomics -- Research, PERL, Application installation/distribution software, Application development software, Expert system development software, Health
Abstract

This article describes the outcomes of the Bioperl project which developed a comprehensive library of Perl modules for managing and manipulating life-science information. The architecture of the toolkit, its usage, and functions are presented. It is easy-to-use, stable, and interfaces with bioinformatics applications and execute analyses and process genome sequence data.

Published
2002

2. Notes from the Lab.

Author

Dagdigian, Chris

Abstract

Evaluates several technological innovations that enable research computing. Advantages of the Opteron dual-core central processing unit from AMD; Factors to be considered in analyzing the performance and capabilities of blade servers; Features of the Penguin Computing BladeRunner system.

Published
2005

3. Adventures in XML Transformation.

Author

Dagdigian, Chris

Abstract

Focuses on developments in XML services. Advantages associated with XPATH program language; Information on XSLT language; Impact of the combination of XPATH and XSLT on the compunter software Grid Engine.

Published
2005

4. Lab Notes: Relief for File Servers.

Author

Dagdigian, Chris

Abstract

Evaluates the RapidFile Peripheral Component Interconnect-X card intended for use in network-attached file servers from Montilio. Features of the RapidFile PCI-X; Advantages of RapidFile over other PCI-X cards; Utilization level of its file server.

Published
2005

5. IT's Alive! Notes from the Lab.

Author

Dagdigian, Chris

Abstract

Presents information on the informatics tools and technologies used in the laboratory of BioTeam. S3116 Storage Server from Rackable Systems; Orion DT -12 desktop cluster system from Orion Mulitisystems; File systems being considered by the laboratory.

Published
2004

6. Breaking Up with RedHat Is Hard to Do.

Author

Dagdigian, Chris

Abstract

Deals with issues concerning the decision of the RedHat company to terminate its RedHat 9.0 operating software. Impact of the company's decision on the research computing community; Alternatives available to research companies concerning updates and security patches; Problems associated with the application of the RedHat Enterprise Linux operating software.

Published
2004

7. Cluster Tricks: Grid Engine License Juggling.

Author

Dagdigian, Chris

Abstract

Presents advice on manipulating grid engine licenses for life science clusters. Problem encountered by a Novartis Institutes for BioMedical Research (NIBR) facility in configuring a life cluster; Background on the problem of preventing the life science cluster of NIBR from running jobs when no licenses are available; Plan devised by NIBR in addressing the problem.

Published
2004

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