11 results on '"Glaire, M."'
Search Results
2. Correlative and functional analysis of genomic instability and immune response in colorectal and endometrial cancer
- Author
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Glaire, M, Church, D, and Tomlinson, I
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Immunology ,Colorectal cancer ,Cancer - Abstract
Cancer is a common disease, which results in considerable amounts of morbidity and mortality worldwide. It is now recognised that the tumour immune response is essential in determining cancer biology. However, anti-tumour immunity varies considerably between cancers, and even within the same cancer type. In part, it is determined by the tumour mutational landscape. But much remains to be understood about how the interaction with the cancer genome shapes the tumour immune microenvironment, and influences clinical outcomes. In this research, I demonstrated that tumour CD8+cell infiltrate is significantly associated with reduced recurrence risk and improved overall survival in stage II/III colorectal cancer (CRC). Importantly, this relationship was independent of key confounding factors, including genomic instabilities that have been shown to influence both anti-tumour immunity and clinical outcomes. Furthermore, this relationship was not consistent across all stage II/III CRCs, but rather varied according to tumour and nodal status. Mismatch repair deficiency (MMRd) is a form of genomic instability that contributes to the development of both CRC and endometrial cancer (EC). I showed that MMRd is associated with improved outcomes in CRC, but not EC. This might be a reflection of differences in the immune landscape between MMRd CRC and EC: MMRd CRCs had much greater levels of infiltrate T lymphocytes. Furthermore, MMRd ECs showed an enrichment for loss of function JAK1 mutations, which was associated with abrogated IFNγ signalling activation. Finally, this research demonstrated a murine model to allow functional investigation of MMR loss and its impact on the tumour microenvironment. Conditional, inducible Mlh1 loss resulted in a specific phenotype, with the development of intestinal polyps. In contrast to human disease, these polyps showed CD8+ T cell exclusion, which may be a secondary to Beta-2 Microglobulin loss. In summary, this work constitutes a correlative and functional study of the associated between the immune response and clinical outcome, and how the this is influenced by tumour genomic instability.
- Published
- 2022
3. A transcriptionally distinct CXCL13+ CD103+ CD8+ T-cell population is associated with B-cell 2 recruitment and neoantigen load in human cancer
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Workel, H, Lubbers, J, Arnold, R, Prins, T, Van Der Vlies, P, De Lange, K, Bosse, T, Van Gool, I, Eggink, F, Wouters, M, Komdeur, F, Creutzberg, C, Kol, A, Plat, A, Glaire, M, Church, D, Nijman, H, and De Bruyn, M
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hemic and immune systems ,chemical and pharmacologic phenomena - Abstract
The chemokine CXCL13 mediates recruitment of B cells to tumors and is essential for the formation of tertiary lymphoid structures (TLS). TLS are thought to support antitumor immunity and are associated with improved prognosis. However, it remains unknown whether TLS are formed in response to the general inflammatory character of the tumor micro-environment, or rather, are induced by (neo-)antigen-specific adaptive immunity. We here report on the unexpected finding that the transforming growth factor beta (TGF-β)-dependent CD103+ CD8+ tumor-infiltrating T cell (TIL) subpopulation expressed and produced CXCL13. Accordingly, CD8+ T cells from peripheral blood activated in the presence of TGF-β upregulated CD103 and secreted CXCL13. Conversely, inhibition of TGF-β receptor signaling abrogated CXCL13 production. Importantly, CXCL13+ CD103+ CD8+ TILs were strongly correlated with B cell recruitment, TLS and neo-antigen burden in six cohorts of human tumors. Altogether our findings indicate that TGF-β plays a non-canonical role in coordinating immune responses against human tumors and suggest a potential role for CXCL13+ CD103+ CD8+ TIL in mediating B cell recruitment and TLS formation in human tumors.
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- 2019
4. Somatic POLE exonuclease domain mutations are early events in sporadic endometrial and colorectal carcinogenesis, determining driver mutational landscape, clonal neoantigen burden and immune response
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Temko, D., Gool, I.C. van, Rayner, E., Glaire, M., Makino, S., Brown, M., Chegwidden, L., Palles, C., Depreeuw, J., Beggs, A., Stathopoulou, C., Mason, J., Baker, A.M., Williams, M., Cerundolo, V., Rei, M., Taylor, J.C., Schuh, A., Ahmed, A., Amant, F., Lambrechts, D., Smit, V.T.H.B.M., Bosse, T., Graham, T.A., Church, D.N., Tomlinson, I., Obstetrics and Gynaecology, and Amsterdam Reproduction & Development (AR&D)
- Subjects
Male ,colorectal cancer ,Adenocarcinoma ,CD8-Positive T-Lymphocytes ,Genomic Instability ,Lymphocytes, Tumor-Infiltrating ,Antigens, Neoplasm ,Databases, Genetic ,Tumor Microenvironment ,Humans ,Genetic Predisposition to Disease ,Poly-ADP-Ribose Binding Proteins ,Neoplasm Staging ,Original Paper ,Whole Genome Sequencing ,Gene Expression Profiling ,precursor lesion ,DNA Polymerase II ,Middle Aged ,Original Papers ,Endometrial Neoplasms ,Gene Expression Regulation, Neoplastic ,Cell Transformation, Neoplastic ,Phenotype ,POLE ,endometrial cancer ,Female ,Neoplasm Grading ,polymerase proofreading ,mutation ,Colorectal Neoplasms - Abstract
Genomic instability, which is a hallmark of cancer, is generally thought to occur in the middle to late stages of tumourigenesis, following the acquisition of permissive molecular aberrations such as TP53 mutation or whole genome doubling. Tumours with somatic POLE exonuclease domain mutations are notable for their extreme genomic instability (their mutation burden is among the highest in human cancer), distinct mutational signature, lymphocytic infiltrate, and excellent prognosis. To what extent these characteristics are determined by the timing of POLE mutations in oncogenesis is unknown. Here, we have shown that pathogenic POLE mutations are detectable in non-malignant precursors of endometrial and colorectal cancer. Using genome and exome sequencing, we found that multiple driver mutations in POLE-mutant cancers show the characteristic POLE mutational signature, including those in genes conventionally regarded as initiators of tumourigenesis. In POLE-mutant cancers, the proportion of monoclonal predicted neoantigens was similar to that in other cancers, but the absolute number was much greater. We also found that the prominent CD8+ T-cell infiltrate present in POLE-mutant cancers was evident in their precursor lesions. Collectively, these data indicate that somatic POLE mutations are early, quite possibly initiating, events in the endometrial and colorectal cancers in which they occur. The resulting early onset of genomic instability may account for the striking immune response and excellent prognosis of these tumours, as well as their early presentation. © 2018 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of Pathological Society of Great Britain and Ireland.
- Published
- 2018
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5. Placebo response and remission rates in Ulcerative Colitis clinical trials: Systematic review and meta-analysis
- Author
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Jairath, V., Parker, C., Guangyong Zou, Macdonald, J. K., Alameel, T., Albeshir, M., Almadi, M., Altaweel, T., Atkinson, N., Biswas, S., Chapman, T., Dulai, P. S., Glaire, M., Hoekman, D., Koutsoumpas, A., Minas, E., Mosli, M. H., Samaan, M. A., Vandervoort, M. K., Travis, S. P., D Haens, G., Levesque, B. G., Sandborn, W. J., and Feagan, B. G.
- Published
- 2015
6. Systematic review with meta-analysis: placebo rates in induction and maintenance trials of Crohn's disease
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Jairath, V., primary, Zou, G., additional, Parker, C. E., additional, MacDonald, J. K., additional, Mosli, M. H., additional, AlAmeel, T., additional, Al Beshir, M., additional, AlMadi, M., additional, Al-Taweel, T., additional, Atkinson, N. S. S., additional, Biswas, S., additional, Chapman, T. P., additional, Dulai, P. S., additional, Glaire, M. A., additional, Hoekman, D., additional, Kherad, O., additional, Koutsoumpas, A., additional, Minas, E., additional, Restellini, S., additional, Samaan, M. A., additional, Khanna, R., additional, Levesque, B. G., additional, D'Haens, G., additional, Sandborn, W. J., additional, and Feagan, B. G., additional
- Published
- 2017
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7. Extending colonic mucosal microbiome analysis-assessment of colonic lavage as a proxy for endoscopic colonic biopsies
- Author
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Watt, E, Gemmell, MR, Berry, S, Glaire, M, Farquharson, F, Louis, P, Murray, GI, El-Omar, E ; https://orcid.org/0000-0002-0011-3924, Hold, GL ; https://orcid.org/0000-0001-7573-3397, Watt, E, Gemmell, MR, Berry, S, Glaire, M, Farquharson, F, Louis, P, Murray, GI, El-Omar, E ; https://orcid.org/0000-0002-0011-3924, and Hold, GL ; https://orcid.org/0000-0001-7573-3397
- Abstract
BACKGROUND: Sequencing-based analysis has become a well-established approach to deciphering the composition of the gut microbiota. However, due to the complexity of accessing sufficient material from colonoscopic biopsy samples, most studies have focused on faecal microbiota analysis, even though it is recognised that differences exist between the microbial composition of colonic biopsies and faecal samples. We determined the suitability of colonic lavage samples to see if it had comparable microbial diversity composition to colonic biopsies as they are without the limitations associated with sample size. We collected paired colonic biopsies and lavage samples from subjects who were attending for colorectal cancer screening colonoscopy.
- Published
- 2016
8. Patterns of cytotoxic T-cell densities in immunogenic endometrial cancers reveal a potential mechanism for differences in immunotherapy efficacy.
- Author
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Ryan N, Glaire M, Walker T, Ter Haar N, Ijsselsteijn M, Bolton J, de Miranda N, Evans G, Church DN, Bosse T, and Crosbie E
- Abstract
Objective: To explore the impact of molecular subtype in endometrial cancer (EC) on CD8+T cell densities. Furthermore, this work will test the assumption that all mismatch repair deficient (MMRd) tumours are immunologically similar which would enable current trial data to be generalised to all MMRd ECs., Methods and Analysis: All tumours were characterised into the four clinical molecular subtypes. For analysis, the TP53 mutant and no-specific molecular profile tumours were grouped together and described as the low mutational burden (LMB) cohort. CD8+T cell counts were taken from four regions of interest which sampled the tumour-stromal interface and the tumour core. CD8+T cell counts were analysed as mean averages., Results: In total, 607 ECs contributed to the analysis. CD8+T cell counts in confirmed Lynch syndrome (LS) ECs were significantly higher than MLH1 -methylated ECs in all tumour locations excluding the tumour stroma. Confirmed LS and path_ POLE ECs had significantly higher CD8+T cell counts across all tumour locations when compared with LMB ECs. There were limited significant differences in CD8+T cell counts between path_ POLE versus confirmed LS ECs. There was no significant difference in the CD8+T cells counts and gene ( MLH1 , MSH2 , MSH6 , PMS2 ) in which the LS pathogenic variant was found; however, this analysis was limited by small numbers., Conclusion: These data indicate that CD8+T cell numbers and distribution is not equal between MLH1 -methylated and confirmed LS ECs. This is relevant when interpreting current trial data looking to the application of checkpoint inhibition treatments in MMRd cancers., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY. Published by BMJ.)
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- 2024
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9. Automated assessment of CD8 + T-lymphocytes and stroma fractions complement conventional staging of colorectal cancer.
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Jiang D, Hveem TS, Glaire M, Church DN, Kerr DJ, Yang L, and Danielsen HE
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- Aged, CD8-Positive T-Lymphocytes metabolism, CD8-Positive T-Lymphocytes pathology, Colorectal Neoplasms etiology, Colorectal Neoplasms mortality, Female, Follow-Up Studies, Humans, Immunohistochemistry, Kaplan-Meier Estimate, Lymphocytes, Tumor-Infiltrating metabolism, Lymphocytes, Tumor-Infiltrating pathology, Male, Microsatellite Instability, Middle Aged, Neoplasm Staging, Prognosis, Tomography, X-Ray Computed, Biomarkers, Tumor, CD8-Positive T-Lymphocytes immunology, Colorectal Neoplasms pathology, Lymphocytes, Tumor-Infiltrating immunology, Stromal Cells pathology, Tumor Microenvironment immunology
- Abstract
Background: Tumor development is critically dependent on the supporting stroma consisting of inflammatory cells and fibroblasts. This study intended to improve prognostic prediction for early colorectal cancer (CRC) by combined estimation of T-lymphocyte and stroma fractions with conventional markers., Methods: In total 509 and 1041 stage II/ΙΙΙ CRC from the VICTOR and QUASAR 2 trials were included as a training set and a validation set, respectively. Intratumoral CD8
+ T-lymphocytes and stroma were identified and quantified by machine-based learning on digital sections. The primary endpoint was to evaluate the prognostic value of the combined marker for time to recurrence (TTR)., Findings: For low-risk patients (n = 598; stage Ⅱ, and stage ΙΙΙ pT1-3 pN1 with neither lymphatic (L- ) nor vascular (V- ) invasion), low stroma fraction (n = 511) identified a good prognostic subgroup with 5-year TTR of 86% (95% CI 83-89), versus the high stroma subgroup TTR of 78% (HR = 1.75, 95% CI 1.05-2.92; P = 0.029). For high-risk patients (n = 394; stage ΙΙΙ pT3 pN1 L+ /V+ , pT4, or pN2), combined low CD8+ and high stroma fraction identified a poor prognostic subgroup (n = 34) with 5-year TTR of 29% (95% CI 17-50), versus the high CD8+ fraction and low stroma fraction subgroup (n = 138) of 64% (HR = 2.86, 95% CI 1.75-4.69; P < 0.001)., Interpretation: Quantification of intratumoral CD8+ T-lymphocyte and stroma fractions can be combined with conventional prognostic markers to improve patient stratification., Competing Interests: Declaration of Competing Interest DK reports personal fees from Oxford Cancer Biomarkers (Oxford, UK), outside the submitted work. All other authors declare no competing interests., (Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.)- Published
- 2021
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10. Extending colonic mucosal microbiome analysis-assessment of colonic lavage as a proxy for endoscopic colonic biopsies.
- Author
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Watt E, Gemmell MR, Berry S, Glaire M, Farquharson F, Louis P, Murray GI, El-Omar E, and Hold GL
- Subjects
- Bacteria genetics, Base Sequence, Colonoscopy methods, Computational Biology methods, Feces microbiology, High-Throughput Nucleotide Sequencing, Humans, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Bacteria classification, Biopsy methods, Colon microbiology, Gastrointestinal Microbiome genetics, Intestinal Mucosa microbiology, Therapeutic Irrigation methods
- Abstract
Background: Sequencing-based analysis has become a well-established approach to deciphering the composition of the gut microbiota. However, due to the complexity of accessing sufficient material from colonoscopic biopsy samples, most studies have focused on faecal microbiota analysis, even though it is recognised that differences exist between the microbial composition of colonic biopsies and faecal samples. We determined the suitability of colonic lavage samples to see if it had comparable microbial diversity composition to colonic biopsies as they are without the limitations associated with sample size. We collected paired colonic biopsies and lavage samples from subjects who were attending for colorectal cancer screening colonoscopy., Results: Next-generation sequencing and qPCR validation were performed with multiple bioinformatics analyses to determine the composition and predict function of the microbiota. Colonic lavage samples contained significantly higher numbers of operational taxonomic units (OTUs) compared to corresponding biopsy samples, however, diversity and evenness between lavage and biopsy samples were similar. The differences seen were driven by the presence of 12 OTUs which were in higher relative abundance in biopsies and were either not present or in low relative abundance in lavage samples, whilst a further 3 OTUs were present in higher amounts in the lavage samples compared to biopsy samples. However, predicted functional community profiling based on 16S ribosomal ribonucleic acid (rRNA) data indicated minimal differences between sample types., Conclusions: We propose that colonic lavage samples provide a relatively accurate representation of biopsy microbiota composition and should be considered where biopsy size is an issue.
- Published
- 2016
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11. Gremlin 1 identifies a skeletal stem cell with bone, cartilage, and reticular stromal potential.
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Worthley DL, Churchill M, Compton JT, Tailor Y, Rao M, Si Y, Levin D, Schwartz MG, Uygur A, Hayakawa Y, Gross S, Renz BW, Setlik W, Martinez AN, Chen X, Nizami S, Lee HG, Kang HP, Caldwell JM, Asfaha S, Westphalen CB, Graham T, Jin G, Nagar K, Wang H, Kheirbek MA, Kolhe A, Carpenter J, Glaire M, Nair A, Renders S, Manieri N, Muthupalani S, Fox JG, Reichert M, Giraud AS, Schwabe RF, Pradere JP, Walton K, Prakash A, Gumucio D, Rustgi AK, Stappenbeck TS, Friedman RA, Gershon MD, Sims P, Grikscheit T, Lee FY, Karsenty G, Mukherjee S, and Wang TC
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- Animals, Cartilage metabolism, Intestine, Small metabolism, Mesenchymal Stem Cells metabolism, Mice, Mice, Inbred C57BL, Bone and Bones cytology, Intercellular Signaling Peptides and Proteins metabolism, Intestine, Small cytology, Mesenchymal Stem Cells cytology
- Abstract
The stem cells that maintain and repair the postnatal skeleton remain undefined. One model suggests that perisinusoidal mesenchymal stem cells (MSCs) give rise to osteoblasts, chondrocytes, marrow stromal cells, and adipocytes, although the existence of these cells has not been proven through fate-mapping experiments. We demonstrate here that expression of the bone morphogenetic protein (BMP) antagonist gremlin 1 defines a population of osteochondroreticular (OCR) stem cells in the bone marrow. OCR stem cells self-renew and generate osteoblasts, chondrocytes, and reticular marrow stromal cells, but not adipocytes. OCR stem cells are concentrated within the metaphysis of long bones not in the perisinusoidal space and are needed for bone development, bone remodeling, and fracture repair. Grem1 expression also identifies intestinal reticular stem cells (iRSCs) that are cells of origin for the periepithelial intestinal mesenchymal sheath. Grem1 expression identifies distinct connective tissue stem cells in both the bone (OCR stem cells) and the intestine (iRSCs)., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
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