38 results on '"John, Ho"'
Search Results
2. Investigating Father or Partner Involvement in Family Integrated Care in Neonatal Units With TARGET (Fathers and Partners in Family Integrated Care): Protocol for a Prospective, Multicenter, Multiphase Study
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Rupa Rubinstein, Katie Gallagher, John Ho, Julian Bose, Minesh Khashu, and Narendra Aladangady
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Medicine ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
BackgroundNeonatal unit (NU) admissions for premature babies can last for months, which can significantly impact parental mental health (MH) with symptoms of depression, stress, and anxiety. Literature suggests fathers experience comparable MH symptoms to mothers. Family integrated care (FICare) is a culture where parents are collaborators and partners in caring for their hospitalized newborns. FICare improves infant outcomes and maternal MH. Similar reports on fathers are limited. ObjectiveThe primary aim of this study is to investigate the impact of supporting father or partner engagement in FICare of preterm infants on their MH up to 6 weeks postdischarge. The secondary aim is to investigate the impact on maternal MH. MethodsThis is a 2-phase study: phase 1 to gather baseline information and phase 2 to assess the impact of enhanced father or partner engagement in FICare on their MH, involving 2 NUs (tertiary and level 2). Enhanced FICare will be developed and introduced (eg, information booklet, workbook, classes, and a father peer-support group) alongside standard FICare practices. Father or partner MH will be assessed with semistructured qualitative interviews and validated questionnaires: Generalized Anxiety Disorder Assessment, Patient Health Questionnaire, and Parental Stressor Scale: Neonatal Intensive Care Unit from NU admission to 6 weeks postdischarge. Mothers will be assessed by focus groups and the same questionnaires. Descriptive statistics and appropriate comparative tests, such as the 2-tailed t test, will be used to analyze and compare phase 1 and 2 data. Qualitative data will be coded line by line with the use of NVivo (Lumivero) and thematically analyzed. Simultaneously, systematic reviews (SRs) of fathers’ experiences of FICare and their MH outcomes will be conducted. The study was approved by the National Research Ethics Committee (22/EM/0140) in August 2022. A parent advisory group was formed to advise on the study methodology, materials, involvement of participant parents, and dissemination of study findings. ResultsA recent SR demonstrated that data saturation is likely to be achieved by interviewing 9 to 17 participants. We will study a maximum of 20 parents of infants born at less than 33 weeks’ gestation in each phase. As of October 2023, the study was ongoing. The SR studies are registered with the PROSPERO database (324275 and 306760). The projected end date for data collection is July 2024; data analysis will be conducted in November 2024 and publication will occur in 2025. ConclusionsThe study aims to demonstrate the feasibility of using a father or partner-sensitive FICare model for parents of premature babies with a positive impact on their MH. It will demonstrate the feasibility of providing FICare to extremely premature babies receiving intensive care. This study may support the development of inclusive FICare guidelines for nonbirthing parents and their extremely premature infants. Trial RegistrationClinicalTrials.gov: NCT06022991; https://classic.clinicaltrials.gov/ct2/show/NCT06022991 International Registered Report Identifier (IRRID)DERR1-10.2196/53160
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- 2024
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3. Comparison of diagnoses of early-onset sepsis associated with use of Sepsis Risk Calculator versus NICE CG149: a prospective, population-wide cohort study in London, UK, 2020–2021
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Kirsty Le Doare, Justin Richards, Paul T Heath, Justinas Teiserskas, Natasha Liow, Helen Smith, Ramnik Mathur, Ruth Shephard, Richard Nicholl, Nandiran Ratnavel, Elizabeth Eyre, Caroline Sullivan, Rie Yoshida, Maria Mendoza, Ambalika Das, Catherine Longley, Andrew Chapman, Shu-Ling Chuang, Sarah May Johnson, Christina Kortsalioudaki, Cheryl Battersby, Amit Verma, Catherine Douch, Keya Sahay, Neha Sharma, Igor Fierens, Tristan Bate, Yinru Lim, Chris Harris, Kate Ryan, Cheentan Singh, Hannah Walker, Alicia Demirjian, Theresa Lamagni, Mariam Elbakry, Neaha Patel, Giles Kendall, Ozioma Obi, Eleanor Hulse, Chloe Ann Cheang, Matthew Rubens, Katie Evans, Kazim Ghafoor, George Lawson, John Ho, Nichola Monks, Lidia Tyszczuk, Chinthika Piyasena, Anne Opute, Zainab Kassim, Sara Tho-Calvi, Erica Twum-Barimah, Divyen Shah, Sara Abdulla, Stephanie Tolan, Sophia Teoh, Siddhartha Paliwal, Uma Srirambhatla, Lucy Crossman, Rebecca Gaunt, Devangi Thakkar, Saranya Ravindran, Sara Farhat Dominguez, Sunanda Bhatia, Joana Freitas, Clare Cane, Ramyia Elangovan, Cassandra Gyamtso, Helen Nightingale, Angela De Cunto, Eleanor Duckworth, Clare Middleton, Lauren Ferretti, Catherine Warrick, Harshini Naidu, Daniel Geer, Nilmi Ekanayake, Lukas Huhn, Rita Marciano, Shivani Shah, Sonia Spathis, Jonathan Filkin, Mohammad Alam, Khadija Ben-Sasi, Julia Croft, Suzanne Sweeney, Reshmi Raychaudhuri, Evangelia Myttaraki, Ayesha Rahim, Sorana Galu, Joanna O'Sullivan, Jenni Jagodzinski, Remon Agaibi, Elmunzir Ahmed, Luvena Anthony, Luana Ayres da Silva, Nauman Balghari, Archana Bansal, Alexandra Briscoe, Sabina Checketts, Jagadish Chintapalli, Li Yan Chow, Jonathan Cookson, Daniel Crane, Andrew DeSilva, Stacey De Atougia, Mariana Gaspar Fonseca, Adeoya Gbemiga Olabamiji, Nicola Glogowski, Andrea Gronska, Jennifer Ho, Nichola Hodges, Ola Joseph, Keisha Kamalanathan, Jessica Kimpton, Niamh Langasco, Rosalie Lear, Amanda Moules, Rajvi Nagrecha, Noor Nusair, Chisaraokwu Nwachukwu, Felicity Ockelford, Chineze Okorowo, Yujing Ooi, Evgenia Panagiotopoulou, Nadia Saleem, Miriam Sanderson, Mashal Shamsuddin, Ana Silva Ferreira, Srikanthy Sivakanthan, Devika Thakur, Naomi Tobi, Madduka Umeh, Benjamin Ummat, Rebecca Unwin, Aarti Verma, Rebecca Wesson, Adelene Wong, Zijian (Chris) Zhang, Juliet Banya, Eleanor Bond, Rina Chotai, Hayley Clements, Alka Desai, Simon Drysdale, Lydia Eze, Laura Govender, Sophie Griffiths, Michela Groppo, Gopinathannair Harikumar, Linda Machakaire, Joselyn Morris, Amisha Singh, Maria Symeonaki, Mercy Ughwujabo, Kirsty Watts, Louis Yee, and Jenny Ziprin
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Medicine - Abstract
Objective We sought to compare the incidence of early-onset sepsis (EOS) in infants ≥34 weeks’ gestation identified >24 hours after birth, in hospitals using the Kaiser Permanente Sepsis Risk Calculator (SRC) with hospitals using the National Institute for Health and Care Excellence (NICE) guidance.Design and setting Prospective observational population-wide cohort study involving all 26 hospitals with neonatal units colocated with maternity services across London (10 using SRC, 16 using NICE).Participants All live births ≥34 weeks’ gestation between September 2020 and August 2021.Outcome measures EOS was defined as isolation of a bacterial pathogen in the blood or cerebrospinal fluid (CSF) culture from birth to 7 days of age. We evaluated the incidence of EOS identified by culture obtained >24 hours to 7 days after birth. We also evaluated the rate empiric antibiotics were commenced >24 hours to 7 days after birth, for a duration of ≥5 days, with negative blood or CSF cultures.Results Of 99 683 live births, 42 952 (43%) were born in SRC hospitals and 56 731 (57%) in NICE hospitals. The overall incidence of EOS (24 hours was 2.3/100 000 (n=1) for SRC vs 7.1/100 000 (n=4) for NICE (OR 0.5, 95% CI (0.1 to 2.7)). This corresponded to (1/20) 5% (SRC) vs (4/45) 8.9% (NICE) of EOS cases (χ=0.3, p=0.59). Empiric antibiotics were commenced >24 hours to 7 days after birth in 4.4/1000 (n=187) for SRC vs 2.9/1000 (n=158) for NICE (OR 1.5, 95% CI (1.2 to 1.9)). 3111 (7%) infants received antibiotics in the first 24 hours in SRC hospitals vs 8428 (15%) in NICE hospitals.Conclusion There was no significant difference in the incidence of EOS identified >24 hours after birth between SRC and NICE hospitals. SRC use was associated with 50% fewer infants receiving antibiotics in the first 24 hours of life.
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- 2023
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4. Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection
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Yoann Zerbib, Emily K. Jenkins, Maryam Shojaei, Adrienne F. A. Meyers, John Ho, T. Blake Ball, Yoav Keynan, Amarnath Pisipati, Aseem Kumar, Anand Kumar, Marek Nalos, Benjamin M. Tang, Klaus Schughart, Anthony McLean, and on behalf of the Nepean Genomic Research Group
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Influenza ,Transcriptome ,Neutrophils ,Neutrophil extracellular trap ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Influenza infections produce a spectrum of disease severity, ranging from a mild respiratory illness to respiratory failure and death. The host-response pathways associated with the progression to severe influenza disease are not well understood. Methods To gain insight into the disease mechanisms associated with progression to severe infection, we analyzed the leukocyte transcriptome in severe and moderate influenza patients and healthy control subjects. Pathway analysis on differentially expressed genes was performed using a topology-based pathway analysis tool that takes into account the interaction between multiple cellular pathways. The pathway profiles between moderate and severe influenza were then compared to delineate the biological mechanisms underpinning the progression from moderate to severe influenza. Results 107 patients (44 severe and 63 moderate influenza patients) and 52 healthy control subjects were included in the study. Severe influenza was associated with upregulation in several neutrophil-related pathways, including pathways involved in neutrophil differentiation, migration, degranulation and neutrophil extracellular trap (NET) formation. The degree of upregulation in neutrophil-related pathways were significantly higher in severely infected patients compared to moderately infected patients. Severe influenza was also associated with downregulation in immune response pathways, including pathways involved in antigen presentation such as CD4+ T-cell co-stimulation, CD8+ T cell and Natural Killer (NK) cells effector functions. Apoptosis pathways were also downregulated in severe influenza patients compare to moderate and healthy controls. Conclusions These findings showed that there are changes in gene expression profile that may highlight distinct pathogenic mechanisms associated with progression from moderate to severe influenza infection.
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- 2020
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5. Neutrophils-related host factors associated with severe disease and fatality in patients with influenza infection
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Benjamin M. Tang, Maryam Shojaei, Sally Teoh, Adrienne Meyers, John Ho, T. Blake Ball, Yoav Keynan, Amarnath Pisipati, Aseem Kumar, Damon P. Eisen, Kevin Lai, Mark Gillett, Rahul Santram, Robert Geffers, Jens Schreiber, Khyobeni Mozhui, Stephen Huang, Grant P. Parnell, Marek Nalos, Monika Holubova, Tracy Chew, David Booth, Anand Kumar, Anthony McLean, and Klaus Schughart
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Science - Abstract
Identification of host factors associated with severe influenza infection could provide insights into treatment options. Here, the authors provide transcriptomic analyses of blood from >100 influenza infected patients and show that changes in circulating neutrophils are associated with severe influenza infection.
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- 2019
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6. Certain Methods of Electrode Pretreatment Create Misleading Responses in Impedimetric Aptamer Biosensors
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Lance St. John Ho, Janice L. Limson, and Ronen Fogel
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Chemistry ,QD1-999 - Published
- 2019
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7. HIV-1 phylodynamic analysis among people who inject drugs in Pakistan correlates with trends in illicit opioid trade.
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François Cholette, Jeffrey Joy, Yann Pelcat, Laura H Thompson, Richard Pilon, John Ho, Rupert Capina, Chris Archibald, James F Blanchard, Faran Emmanuel, Tahira Reza, Nosheen Dar, Richard Harrigan, John Kim, and Paul Sandstrom
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Medicine ,Science - Abstract
Pakistan is considered by the World Health Organization to currently have a "concentrated" HIV-1 epidemic due to a rapid rise in infections among people who inject drugs (PWID). Prevalence among the country's nearly 105,000 PWID is estimated to be 37.8% but has been shown to be higher in several large urban centers. A lack of public health resources, the common use of professional injectors and unsafe injection practices are believed to have fueled the outbreak. Here we evaluate the molecular characteristics of HIV-1 sequences (n = 290) from PWID in several Pakistani cities to examine transmission dynamics and the association between rates of HIV-1 transmission with regards to regional trends in opioid trafficking. Tip-to-tip (patristic) distance based phylogenetic cluster inferences and BEAST2 Bayesian phylodynamic analyses of time-stamped data were performed on HIV-1 pol sequences generated from dried blood spots collected from 1,453 PWID as part of a cross-sectional survey conducted in Pakistan during 2014/2015. Overall, subtype A1 strains were dominant (75.2%) followed by CRF02_AG (14.1%), recombinants/unassigned (7.2%), CRF35_AD (2.1%), G (1.0%) and C (0.3%). Nearly three quarters of the PWID HIV-1 sequences belonged to one of five distinct phylogenetic clusters. Just below half (44.4%) of individuals in the largest cluster (n = 118) did seek help injecting from professional injectors which was previously identified as a strong correlate of HIV-1 infection. Spikes in estimated HIV-1 effective population sizes coincided with increases in opium poppy cultivation in Afghanistan, Pakistan's western neighbor. Structured coalescent analysis was undertaken in order to investigate the spatial relationship of HIV-1 transmission among the various cities under study. In general terms, our analysis placed the city of Larkana at the center of the PWID HIV-1 epidemic in Pakistan which is consistent with previous epidemiological data.
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- 2020
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8. Impairment of Inhibitory Synapse Formation and Motor Behavior in Mice Lacking the NL2 Binding Partner LHFPL4/GARLH4
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Min Wu, Hong-Lei Tian, Xiaobo Liu, John Ho Chun Lai, Shengwang Du, and Jun Xia
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Biology (General) ,QH301-705.5 - Abstract
Summary: Normal brain functions depend on the balanced development of excitatory and inhibitory synapses. Our knowledge of the molecular mechanisms underlying inhibitory synapse formation is limited. Neuroligin-2 (NL2), a transmembrane protein at inhibitory postsynaptic sites, is capable of initiating inhibitory synapse formation. In an effort to search for NL2 binding proteins and the downstream mechanisms responsible for inhibitory synapse development, we identify LHFPL4/GARLH4 as a major NL2 binding partner that is specifically enriched at inhibitory postsynaptic sites. LHFPL4/GARLH4 and NL2 regulate the protein levels and synaptic clustering of each other in the cerebellum. Lhfpl4/Garlh4−/− mice display profound impairment of inhibitory synapse formation as well as prominent motor behavioral deficits and premature death. Our findings highlight the essential role of LHFPL4/GARLH4 in brain functions by regulating inhibitory synapse formation as a major NL2 binding partner. : Wu et al. identify LHFPL4/GARLH4 as a major NL2 binding partner that is specifically enriched at inhibitory postsynaptic sites and regulates inhibitory synapse formation. Deletion of LHFPL4/GARLH4 in mice results in profound impairment of inhibitory synapse formation as well as prominent motor behavioral deficits and premature death. Keywords: LHFPL4/GARLH4, neuroligin-2, inhibitory synapse, GABAAR
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- 2018
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9. Forecasting Danerous Inmate Misconduct: An Applications of Ensemble Statistical Procedures
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Berk, Richard A., Kriegler, Brian, and Baek, John-Ho
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In this paper, we attempt to forecast which prison inmates are likely to engage in very serious misconduct while incarcerated. Such misconduct would usually be a ma jor felony if committed outside of prison: drug trafficking, assault, rape, attempted murder and other crimes. The binary response variable is problematic because it is highly unbalanced. Using data from nearly 10,000 inmates held in facilities operated by the California Department of Corrections, we show that several popular classification procedures do no better than the marginal distribution unless the data are weighted in a fashion that compensates for the lack of balance. Then, random forests performs reasonably well, and better than CART or logistic regression. Although less than 3% of the inmates studied over 24 months were reported for very serious misconduct, we are able to correctly forecast such behavior about half the time.
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- 2005
10. P71 What are parents’ and patients’ perceptions of paediatric rheumatology shared-care in a London district general hospital? An evaluation to drive service improvement
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Lauren Huckerby, Shaniah Hussain, Nikita Thanki, Ashraf Gabr, and John Ho
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Rheumatology - Abstract
Introduction/Background Whipps Cross University Hospital is a District General Hospital (DGH) in London. Children with musculoskeletal and rheumatic conditions are looked after by a paediatric multidisciplinary team (MDT). In approximately one third of cases (around 50 patients), care is shared with tertiary teams. It is widely cited in literature that patients with specialist conditions benefit from receiving specialist care. However, there are many positives of shared-care where patients also receive treatment in the local hospital. The provision of immunosuppressive treatment, regular blood monitoring, and appointments with MDT professionals (e.g. doctors/physiotherapists/ophthalmologists/community nurses) can add further complexities to shared-care. Description/Method Our objective was to identify the strengths and weaknesses of the current Paediatric Rheumatology shared-care service at our DGH and to provide an action plan for improving the service. Children and young people looked after by our DGH for a rheumatological condition, on immunosuppressants, whose care was shared with the tertiary centre were selected. Data collection was done via one-to-one telephone interviews with families based on a semi-structured questionnaire including the following four themes: 1. Views of shared care rheumatology. 2. Blood tests and the blood monitoring experience. 3. Medication related issues: obtaining, collecting and giving medication. 4. Views on transition to adult care. The questionnaire was produced jointly by a paediatric doctor, the lead paediatric pharmacist and the lead nurse for the paediatric day unit, who is involved in blood tests, blood monitoring and delivering immunosuppressant medication. The questionnaire was piloted and modified. Interviews were conducted by a doctor not involved in the routine shared-care service to encourage honest answers, and to reduce observer and investigator bias. After data collection, quantitative and qualitative analysis (thematic analysis) were performed. Strengths and weaknesses of the service were identified. Discussion/Results 20 patients met our selection criteria and all 20 responded. Questionnaires were completed between April and July 2020. On average, in the last year, patients visited their local DGH 2.5 times and their tertiary centre 2.9 times. 75% of these visits were outpatient appointments. Shared Care The following issues were identified by families through thematic analysis: 1. Proximity to home for appointments was important. The local team is responsive to their care. 2. Many appointments over both centres and missing school for appointments was a concern. 3. Local and tertiary centres don’t always share information. 4. Most families were happy to visit both hospitals. Blood Tests Blood testing was split between the GP, the local DGH, the tertiary hospital and community nurses. Blood tests were usually performed every 2-3 months. Families spoke positively about the blood testing experience. The suggested improvements were: 1. Proximity to home for blood tests to avoid missing school. 2. Better communication of results between hospitals. 3. A record of blood test results to keep at home. Medication-Related Issues 70% of our cohort were taking methotrexate, and 20% were taking biologic medications. Prescriptions were provided by the GP, the local DGH and the tertiary centre. Issues identified by families were: 1. Barriers to collecting medications (e.g. unhappy to leave the house due to COVID-19; unsure where to collect medication from; problems with obtaining prescriptions from the GP). 2. Better communication needed between hospitals about when new medication will start. 3. Patients would like to reduce the pain of the injection. 4. Methotrexate has too many side effects. Transitioning to Adult Care Most young people (60%) preferred to stay local to home and move to adult services at their local DGH, if there were to be an adolescent service with overlap between paediatric and adult services. Key learning points/Conclusion The strengths and weaknesses of shared-care rheumatology were identified by families at our DGH. Strengths were that families felt both the local and tertiary centres played a necessary role in care. Weaknesses were that families had many appointments over both centres and missing school was problematic. Some families reported communication between hospitals could be improved. The paediatric MDT proposed a list of quality improvement interventions: 1. Set up a one-stop Paediatric Rheumatology Super MDT clinic, to see the physiotherapist, ophthalmologist, paediatrician and pharmacist, if required, all in one morning. 2 one-stop clinics ran in March and May 2022. It is estimated that this super MDT clinic will save 3 to 4 DGH visits per year. 2. Obtain remote access to the tertiary hospital computer system for the local Paediatric Rheumatology team. This will improve communication between hospitals. 3. Encourage patients to view letters and results from the tertiary centre through the tertiary hospital patient app MyGOSH. This will improve timely information sharing. 4. Set up an MDT meeting with the day unit nurse and pharmacist every 2 months to discuss each patient requiring hospital prescribed medication. 5. The clinician to liaise with families around improving injection technique, and to discuss measures to mitigate side effects of medications. 6. Establish a system for posting medication to parents by pharmacy. This is in place as of August 2020 with an aim of reducing barriers to collecting medications. 7. Explore transitioning to alternative adolescent care closer to home. Our next steps will involve re-assessing if the interventions above have helped improve communication with the tertiary hospital, whether they have reduced the number of appointments, and whether medication concerns were resolved. We believe that this innovative project has improved patient access to appointments, as well as their experience of the shared-care service.
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- 2022
11. An Unbalanced Translocation Involving Partial Duplication of Chromosome 6 and Partial Deletion of Chromosome 10 in a Premature Infant with Tetralogy of Fallot
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Kevin Mo, John G. Wear, John Ho, Teagan Tran, Arjina Boodaghian, Mitchell Goldstein, and Clark Robin
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0301 basic medicine ,Genetics ,03 medical and health sciences ,030104 developmental biology ,Chromosome (genetic algorithm) ,Partial duplication ,medicine ,Chromosomal translocation ,030105 genetics & heredity ,Biology ,medicine.disease ,Tetralogy of Fallot - Abstract
Purpose: To report a case of simultaneous chromosome 10 partial deletion and chromosome 6 partial duplication in a preterm infant. Methods: This is a retrospective case report followed with clinical observation, echocardiogram, and genetic testing. Results: A neonate with Tetralogy of Fallot, clubbed feet, low set ears, and webbed neck was found to have chromosomal abnormalities that are consistent with unbalanced translocation between chromosomes 6 and 10, resulting in a partial duplication of chromosome 6 and partial deletion of chromosome 10. Discussion: Chromosome microarray testing in a patient with multiple congenital anomalies can facilitate rapid diagnosis and treatment with the potential to improve the management of complications and subsequent development.
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- 2020
12. SARS-CoV-2 Omicron variant replication in human respiratory tract ex vivo
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Michael C. W. Chan, Kenrie PY Hui, John Ho, Man-chun Cheung, Ka-chun Ng, Rachel Ching, Ka-ling Lai, Tonia Kam, Haogao Gu, Ko-Yung Sit, Michael Hsin, Wing-Kuk Au, Leo Poon, Malik Peiris, and John Nicholls
- Abstract
Emergence of SARS-CoV-2 variants of concern (VOC) with progressively increased transmissibility between humans is a threat to global public health. Omicron variant also evades immunity from natural infection or vaccines1. It is unclear whether its exceptional transmissibility is due to immune evasion or inherent virological properties.We compared the replication competence and cellular tropism of the wild type (WT) virus, D614G, Alpha, Beta, Delta and Omicron variants in ex vivo explant cultures of human bronchus and lung. Dependence on TMPRSS2 for infection was also evaluated. We show that Omicron replicated faster than all other SARS-CoV-2 in the bronchus but less efficiently in the lung parenchyma. All VOCs had similar cellular tropism as the WT. Delta was more dependent on serine protease than other VOCs tested.Our findings demonstrate that Omicron is inherently able to replicate faster than other variants known to date and this likely contributes to its inherently higher transmissibility, irrespective of its ability to evade antibody immunity. The lower replication competence of Omicron in human lung may be compatible with reduced severity but the determinants of severe disease are multifactorial. These findings provide important biological clues to the transmissibility and pathogenesis of SARS-CoV-2 VOCs.
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- 2021
13. Nonspecific nuclear uptake of anti-MUC1 aptamers by dead cells: the role of cell viability monitoring in aptamer targeting of membrane-bound protein cancer biomarkers
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Shane Flanagan, Ronen Fogel, Lance St John Ho, Janice Limson, and Adrienne L. Edkins
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Cell Survival ,General Chemical Engineering ,Aptamer ,Cell ,DNA, Single-Stranded ,Epitope ,Analytical Chemistry ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,Neoplasms ,medicine ,Biomarkers, Tumor ,Humans ,Viability assay ,MUC1 ,030304 developmental biology ,0303 health sciences ,Chemistry ,General Engineering ,Membrane Proteins ,Cell sorting ,Cell biology ,medicine.anatomical_structure ,Cell culture ,030220 oncology & carcinogenesis ,MCF-7 Cells - Abstract
Most aptamers targeting cell-expressed antigens are intended for in vivo application, however, these sequences are commonly generated in vitro against synthetic oligopeptide epitopes or recombinant proteins. As these in vitro analogues frequently do not mimic the in vivo target within an endogenous environment, the evolved aptamers are often prone to nonspecific binding. The presence of dead cells and cellular debris further complicate aptamer targeting, due to their high nonspecific affinities to single-stranded DNA. Despite these known limitations, assessment of cell viability and/or the removal of dead cells is rarely applied as part of the methodology during in vivo testing of aptamer binding. Furthermore, the extent and route(s) by which dead cells uptake existing aptamers remains to be determined in the literature. For this purpose, the previously reported aptamer sequences 5TR1, 5TR4, 5TRG2 and S22 - enriched against the MUC1 tumour marker of the mucin glycoprotein family - were used as model sequences to evaluate the influence of cell viability and the presence of nontarget cell-expressed protein on aptamer binding to the MUC1 expressing human cancer cell lines MCF-7, Hs578T, SW480, and SW620. From fluorescence microscopy analysis, all tested aptamers demonstrated extensive nonspecific uptake within the nuclei of dead cells with compromised membrane integrities. Using fluorescent-activated cell sorting (FACS), the inclusion of excess double-stranded DNA as a blocking agent showed no effect on nonspecific aptamer uptake by dead cells. Further nonspecific binding to cell-membrane bound and intracellular protein was evident for each aptamer sequence, as assessed by southwestern blotting and FACS. These factors likely contributed to the ∼120-fold greater binding response of the 5TR1 aptamer to dead MCF-7 cells over equivalent live cell populations. The identification of dead cells and cellular debris using viability stains and the subsequent exclusion of these cells from FACS analysis was identified as an essential requirement for the evaluation of aptamer binding specificity to live cell populations of the cancer cell lines MCF-7, Hs578T and SW480. The research findings stress the importance of dead cell uptake and more comprehensive cell viability screening to validate novel aptamer sequences for diagnostic and therapeutic application.
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- 2021
14. Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection
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Marek Nalos, Benjamin Tang, Maryam Shojaei, T. Blake Ball, Aseem Kumar, John Ho, Anthony S. McLean, Adrienne F. A. Meyers, Amarnath Pisipati, Yoav Keynan, Klaus Schughart, Anand Kumar, Emily K. Jenkins, Yoann Zerbib, University of Manitoba, and HZI,Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7,38124 Braunschweig, Germany.
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Adult ,Male ,lcsh:Internal medicine ,lcsh:QH426-470 ,Neutrophils ,T cell ,Disease ,macromolecular substances ,Severity of Illness Index ,Transcriptome ,Immune system ,Downregulation and upregulation ,Neutrophil differentiation ,Influenza, Human ,Genetics ,Leukocytes ,Medicine ,Humans ,lcsh:RC31-1245 ,Genetics (clinical) ,Aged ,business.industry ,musculoskeletal, neural, and ocular physiology ,Neutrophil extracellular traps ,Middle Aged ,Influenza ,lcsh:Genetics ,medicine.anatomical_structure ,Gene Expression Regulation ,nervous system ,Immunology ,Female ,business ,Neutrophil extracellular trap ,CD8 ,Research Article - Abstract
Background Influenza infections produce a spectrum of disease severity, ranging from a mild respiratory illness to respiratory failure and death. The host-response pathways associated with the progression to severe influenza disease are not well understood. Methods To gain insight into the disease mechanisms associated with progression to severe infection, we analyzed the leukocyte transcriptome in severe and moderate influenza patients and healthy control subjects. Pathway analysis on differentially expressed genes was performed using a topology-based pathway analysis tool that takes into account the interaction between multiple cellular pathways. The pathway profiles between moderate and severe influenza were then compared to delineate the biological mechanisms underpinning the progression from moderate to severe influenza. Results 107 patients (44 severe and 63 moderate influenza patients) and 52 healthy control subjects were included in the study. Severe influenza was associated with upregulation in several neutrophil-related pathways, including pathways involved in neutrophil differentiation, migration, degranulation and neutrophil extracellular trap (NET) formation. The degree of upregulation in neutrophil-related pathways were significantly higher in severely infected patients compared to moderately infected patients. Severe influenza was also associated with downregulation in immune response pathways, including pathways involved in antigen presentation such as CD4+ T-cell co-stimulation, CD8+ T cell and Natural Killer (NK) cells effector functions. Apoptosis pathways were also downregulated in severe influenza patients compare to moderate and healthy controls. Conclusions These findings showed that there are changes in gene expression profile that may highlight distinct pathogenic mechanisms associated with progression from moderate to severe influenza infection.
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- 2020
15. HIV-1 phylodynamic analysis among people who inject drugs in Pakistan correlates with trends in illicit opioid trade
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Paul Sandstrom, James F. Blanchard, Laura H. Thompson, Yann Pelcat, Chris P. Archibald, Faran Emmanuel, François Cholette, Richard Harrigan, Jeffrey B. Joy, Tahira Reza, Rupert Capina, John Ho, Richard Pilon, Nosheen Dar, and John Kim
- Subjects
0301 basic medicine ,RNA viruses ,Male ,Human immunodeficiency virus (HIV) ,Social Sciences ,HIV Infections ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Heroin ,Coalescent theory ,law.invention ,Geographical Locations ,0302 clinical medicine ,Immunodeficiency Viruses ,law ,Epidemiology ,HIV Seropositivity ,Medicine and Health Sciences ,Pakistan ,030212 general & internal medicine ,Dried blood ,Substance Abuse, Intravenous ,Phylogeny ,Data Management ,Multidisciplinary ,Geography ,Phylogenetic Analysis ,Phylogenetics ,Analgesics, Opioid ,Transmission (mechanics) ,Medical Microbiology ,Behavioral Pharmacology ,Viral Pathogens ,Viruses ,Medicine ,Female ,Pathogens ,medicine.drug ,Research Article ,Adult ,medicine.medical_specialty ,Computer and Information Sciences ,Asia ,Population Size ,Science ,Human Geography ,Microbiology ,Urban Geography ,03 medical and health sciences ,Young Adult ,Population Metrics ,Effective Population Size ,Recreational Drug Use ,Retroviruses ,medicine ,Genetics ,Humans ,Evolutionary Systematics ,Cities ,Microbial Pathogens ,Taxonomy ,Pharmacology ,Evolutionary Biology ,Population Biology ,Public health ,Lentivirus ,Organisms ,Afghanistan ,Outbreak ,Biology and Life Sciences ,HIV ,Opioid-Related Disorders ,030104 developmental biology ,Cross-Sectional Studies ,People and Places ,HIV-1 ,Earth Sciences ,Population Genetics ,Demography - Abstract
Pakistan is considered by the World Health Organization to currently have a "concentrated" HIV-1 epidemic due to a rapid rise in infections among people who inject drugs (PWID). Prevalence among the country's nearly 105,000 PWID is estimated to be 37.8% but has been shown to be higher in several large urban centers. A lack of public health resources, the common use of professional injectors and unsafe injection practices are believed to have fueled the outbreak. Here we evaluate the molecular characteristics of HIV-1 sequences (n = 290) from PWID in several Pakistani cities to examine transmission dynamics and the association between rates of HIV-1 transmission with regards to regional trends in opioid trafficking. Tip-to-tip (patristic) distance based phylogenetic cluster inferences and BEAST2 Bayesian phylodynamic analyses of time-stamped data were performed on HIV-1 pol sequences generated from dried blood spots collected from 1,453 PWID as part of a cross-sectional survey conducted in Pakistan during 2014/2015. Overall, subtype A1 strains were dominant (75.2%) followed by CRF02_AG (14.1%), recombinants/unassigned (7.2%), CRF35_AD (2.1%), G (1.0%) and C (0.3%). Nearly three quarters of the PWID HIV-1 sequences belonged to one of five distinct phylogenetic clusters. Just below half (44.4%) of individuals in the largest cluster (n = 118) did seek help injecting from professional injectors which was previously identified as a strong correlate of HIV-1 infection. Spikes in estimated HIV-1 effective population sizes coincided with increases in opium poppy cultivation in Afghanistan, Pakistan's western neighbor. Structured coalescent analysis was undertaken in order to investigate the spatial relationship of HIV-1 transmission among the various cities under study. In general terms, our analysis placed the city of Larkana at the center of the PWID HIV-1 epidemic in Pakistan which is consistent with previous epidemiological data.
- Published
- 2020
16. Impairment of Inhibitory Synapse Formation and Motor Behavior in Mice Lacking the NL2 Binding Partner LHFPL4/GARLH4
- Author
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Hong-Lei Tian, Xiaobo Liu, John Ho Chun Lai, Jun Xia, Shengwang Du, and Min Wu
- Subjects
0301 basic medicine ,Cerebellum ,Cell Adhesion Molecules, Neuronal ,Neurogenesis ,Nerve Tissue Proteins ,Motor behavior ,Motor Activity ,Inhibitory postsynaptic potential ,Hippocampus ,DNA-binding protein ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Postsynaptic potential ,medicine ,Animals ,lcsh:QH301-705.5 ,Cells, Cultured ,Mice, Knockout ,Neurons ,Behavior, Animal ,Chemistry ,Membrane Proteins ,Inhibitory synapse formation ,Neural Inhibition ,Transmembrane protein ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Biology (General) ,Synapses ,Excitatory postsynaptic potential ,Neuroscience ,030217 neurology & neurosurgery ,Protein Binding - Abstract
Summary: Normal brain functions depend on the balanced development of excitatory and inhibitory synapses. Our knowledge of the molecular mechanisms underlying inhibitory synapse formation is limited. Neuroligin-2 (NL2), a transmembrane protein at inhibitory postsynaptic sites, is capable of initiating inhibitory synapse formation. In an effort to search for NL2 binding proteins and the downstream mechanisms responsible for inhibitory synapse development, we identify LHFPL4/GARLH4 as a major NL2 binding partner that is specifically enriched at inhibitory postsynaptic sites. LHFPL4/GARLH4 and NL2 regulate the protein levels and synaptic clustering of each other in the cerebellum. Lhfpl4/Garlh4−/− mice display profound impairment of inhibitory synapse formation as well as prominent motor behavioral deficits and premature death. Our findings highlight the essential role of LHFPL4/GARLH4 in brain functions by regulating inhibitory synapse formation as a major NL2 binding partner. : Wu et al. identify LHFPL4/GARLH4 as a major NL2 binding partner that is specifically enriched at inhibitory postsynaptic sites and regulates inhibitory synapse formation. Deletion of LHFPL4/GARLH4 in mice results in profound impairment of inhibitory synapse formation as well as prominent motor behavioral deficits and premature death. Keywords: LHFPL4/GARLH4, neuroligin-2, inhibitory synapse, GABAAR
- Published
- 2018
17. Effect of processing parameters on the formability of recycle friendly AA5754 alloy
- Author
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Das Sazol Kumar, John Ho, Son Changook, and Matthew Heyen
- Subjects
Materials science ,Metallurgy ,Alloy ,engineering ,Formability ,TA1-2040 ,engineering.material ,Engineering (General). Civil engineering (General) - Abstract
AA5xxx series Al-Mg alloys possess good combination of high specific strength-to-weight ratio, formability and corrosion resistance, which makes them attractive to the automakers for their light weighting needs. Increasingly the automakers are demanding sustainable materials. Developing aluminum alloys with increased recycled content is becoming imperative. However, increasing the recycled content can negatively impact the overall formability and joinability of the alloy. Formability is important in the shaping of complex parts and it is a key requirement in automotive manufacturing. Similarly, the other key requirement for automotive sheet is joinability. Self-piercing riveting (SPR) technology is increasingly being used for joining. In this study, the process optimization of high recycle content AA5754 alloy’s for formability and rivetability will be discussed. Controlling the annealing heat treatment to produce optimum combination of grain size along with balanced recrystallized and rolling texture to improve the SPR joint configuration will be presented.
- Published
- 2020
18. 56. Grisel’s syndrome (Non-traumatic atlantoaxial rotatory subluxation), a rare but serious complication of Ehlers Danlos Syndrome
- Author
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John Ho
- Subjects
030203 arthritis & rheumatology ,Subluxation ,medicine.medical_specialty ,business.industry ,medicine.disease ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,Ehlers–Danlos syndrome ,Grisel's syndrome ,Non traumatic ,medicine ,Pharmacology (medical) ,030212 general & internal medicine ,Complication ,business - Published
- 2017
19. Panel: Overtime Compensation an Pay Equity in Higher Education (CLE)
- Author
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John Ho
- Published
- 2017
20. A2 HIV transmission networks among injection drug users in Pakistan
- Author
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Faran Emmanuel, Paul Sandstrom, John Ho, Kiana Kadivar, James F. Blanchard, Hillary McCoubrey, Laura H. Thompson, François Cholette, James Brooks, and John Kim
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Drug ,medicine.medical_specialty ,business.industry ,media_common.quotation_subject ,MEDLINE ,Microbiology ,Text mining ,Virology ,Family medicine ,medicine ,Abstract Overview ,21st International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology ,Hiv transmission ,business ,media_common - Published
- 2017
21. Omohyoid Muscle Syndrome in a Mixed Martial Arts Athlete
- Author
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Alexander D Lee, Shayne B. Young, Patrick J. Battaglia, Alexander Yu, and C. John Ho
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Male ,medicine.medical_specialty ,omohyoid ,Physical Therapy, Sports Therapy and Rehabilitation ,Omohyoid muscle ,neck muscles ,Young Adult ,Physical medicine and rehabilitation ,Swallowing ,Humans ,omohyoid sling syndrome ,sternocleidomastoid ,Medicine ,Orthopedics and Sports Medicine ,Ultrasonography ,Martial arts ,business.industry ,Syndrome ,omohyoid muscle syndrome ,Current Research ,Lateral neck ,Neck muscles ,Deglutition ,Radiography ,martial arts ,Physical therapy ,business - Abstract
Omohyoid muscle syndrome is a rare cause of an X-shaped bulging lateral neck mass that occurs on swallowing. This is a diagnostic case report of a 22-year-old mixed martial arts athlete who acquired this condition.
- Published
- 2014
22. Impairment of Inhibitory Synapse Formation and Motor Behavior in Mice Lacking the NL2 Binding Partner LHFPL4/GARLH4
- Author
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Wu, Min, primary, Tian, Hong-Lei, additional, Liu, Xiaobo, additional, Lai, John Ho Chun, additional, Du, Shengwang, additional, and Xia, Jun, additional
- Published
- 2018
- Full Text
- View/download PDF
23. Panel: The Fair Labor Standards act and Professional Employment on Campus
- Author
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John Ho
- Published
- 2016
24. A novel immune biomarker
- Author
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Benjamin M, Tang, Maryam, Shojaei, Grant P, Parnell, Stephen, Huang, Marek, Nalos, Sally, Teoh, Kate, O'Connor, Stephen, Schibeci, Amy L, Phu, Anand, Kumar, John, Ho, Adrienne F A, Meyers, Yoav, Keynan, Terry, Ball, Amarnath, Pisipati, Aseem, Kumar, Elizabeth, Moore, Damon, Eisen, Kevin, Lai, Mark, Gillett, Robert, Geffers, Hao, Luo, Fahad, Gul, Jens, Schreiber, Sandra, Riedel, David, Booth, Anthony, McLean, and Klaus, Schughart
- Subjects
Male ,Gene Expression ,Membrane Proteins ,Bacterial Infections ,Middle Aged ,Bacterial Physiological Phenomena ,Orthomyxoviridae ,Diagnosis, Differential ,Predictive Value of Tests ,Host-Pathogen Interactions ,Influenza, Human ,Humans ,Female ,Interferons ,Respiratory Tract Infections ,Biomarkers - Abstract
Host response biomarkers can accurately distinguish between influenza and bacterial infection. However, published biomarkers require the measurement of many genes, thereby making it difficult to implement them in clinical practice. This study aims to identify a single-gene biomarker with a high diagnostic accuracy equivalent to multi-gene biomarkers.In this study, we combined an integrated genomic analysis of 1071 individuals with
- Published
- 2015
25. A novel immune biomarker IFI27 discriminates between influenza and bacteria in patients with suspected respiratory infection
- Author
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Stephen Huang, Sandra Riedel, Kate S. O'Connor, Elizabeth Moore, Sally Teoh, Marek Nalos, Maryam Shojaei, Terry B. Ball, Anthony S. McLean, Anand Kumar, Adrienne F. A. Meyers, Mark Gillett, John Ho, Kevin Lai, Aseem Kumar, David R. Booth, Stephen D. Schibeci, Grant P Parnell, Amy Phu, Fahad Gul, Damon P. Eisen, Amarnath Pisipati, Jens Schreiber, Benjamin Tang, Robert Geffers, Yoav Keynan, Hao Luo, and Klaus Schughart
- Subjects
0301 basic medicine ,Pulmonary and Respiratory Medicine ,business.industry ,Respiratory infection ,TLR7 ,Human genetics ,Virus ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Immune system ,In vivo ,030220 oncology & carcinogenesis ,Immunology ,Medicine ,Biomarker (medicine) ,business ,Prospective cohort study - Abstract
Host response biomarkers can accurately distinguish between influenza and bacterial infection. However, published biomarkers require the measurement of many genes, thereby making it difficult to implement them in clinical practice. This study aims to identify a single-gene biomarker with a high diagnostic accuracy equivalent to multi-gene biomarkers.In this study, we combined an integrated genomic analysis of 1071 individuals with in vitro experiments using well-established infection models.We identified a single-gene biomarker, IFI27, which had a high prediction accuracy (91%) equivalent to that obtained by multi-gene biomarkers. In vitro studies showed that IFI27 was upregulated by TLR7 in plasmacytoid dendritic cells, antigen-presenting cells that responded to influenza virus rather than bacteria. In vivo studies confirmed that IFI27 was expressed in influenza patients but not in bacterial infection, as demonstrated in multiple patient cohorts (n=521). In a large prospective study (n=439) of patients presented with undifferentiated respiratory illness (aetiologies included viral, bacterial and non-infectious conditions), IFI27 displayed 88% diagnostic accuracy (AUC) and 90% specificity in discriminating between influenza and bacterial infections.IFI27 represents a significant step forward in overcoming a translational barrier in applying genomic assay in clinical setting; its implementation may improve the diagnosis and management of respiratory infection.
- Published
- 2017
26. Abstract 12059: High Cardiorespiratory Fitness is Associated With Larger Coronary Artery Diameters
- Author
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John Ho, John Cannaday, Carrie Finley, Carolyn Barlow, Wendy Wade, Dale Reinhardt, Joe Ellis, Laura DeFina, Larry Gibbons, and Kenneth Cooper
- Subjects
Physiology (medical) ,Cardiology and Cardiovascular Medicine - Abstract
Introduction: Cardiorespiratory fitness is inversely associated with morbidity and mortality even after adjustment for traditional risk factors. The biological mechanism for the protective effect of high fitness is largely unknown. Hypothesis: We hypothesized that high fitness would be associated with larger coronary artery diameters independent of traditional risk factors. Methods: In this study, 500 men with a coronary artery calcium score (CACS) < 10 were evaluated, with 100 from each age-adjusted fitness quintile (very poor, 1-20%; poor, 21-39%; fair, 40-59%; good, 60-79%; and excellent, 80-100%). Each participant had undergone fitness assessment with an exercise treadmill test on the day of CACS. Blinded to the fitness category, one of us measured the proximal diameters of the left main (LM), left anterior descending (LAD), left circumflex (LCx), and the right coronary (RCA) arteries. Spearman correlations were calculated for the diameters of each coronary artery with treadmill time and for the sum of artery diameters with treadmill time. Linear mixed-effects regression was used to estimate the association between fitness and coronary artery diameters while adjusting for potential confounders. Results: Each coronary artery diameter (LM r=0.12, p=0.009; LAD r=0.11, p=0.02; LCx r=0.10, p=0.02; RCA r=0.18, p Conclusion: Higher fitness is positively associated with larger coronary artery diameters.
- Published
- 2014
27. Cu2ZnSn(S,Se)4 kesterite solar cell with 5.1% efficiency using spray pyrolysis of aqueous precursor solution followed by selenization
- Author
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Xiaodong Chen, Lydia Helena Wong, Tze Chien Sum, Chun Wan John Ho, Alfred Huan, Tianliang Zhang, Kong Fai Tai, Xin Zeng, School of Materials Science & Engineering, School of Physical and Mathematical Sciences, and Energy Research Institute @ NTU (ERI@N)
- Subjects
Aqueous solution ,Materials science ,Renewable Energy, Sustainability and the Environment ,Energy conversion efficiency ,Mineralogy ,engineering.material ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,law.invention ,Engineering::Materials [DRNTU] ,chemistry.chemical_compound ,symbols.namesake ,chemistry ,Chemical engineering ,law ,Solar cell ,engineering ,symbols ,CZTS ,Kesterite ,Raman spectroscopy ,Pyrolysis ,Stoichiometry - Abstract
Kesterite thin film solar cell has been fabricated by chemical spray pyrolysis (CSP) of an aqueous solution followed by high temperature selenization. The pyrolysis formation of Cu2ZnSnS4 was conducted in atmospheric condition with substrate temperature of 280 °C. X-ray diffraction and Raman spectroscopy study confirmed the formation of the single phase Cu2ZnSn(S,Se)4 kesterite structure after selenization without traceable secondary phases. FESEM image shows a uniform absorber layer without carbon layer formed between CZTSSe and Mo. Power conversion efficiency of 5.1% was obtained with different amounts of selenium incorporation. Power dependent and temperature dependent photoluminescence (PL) study revealed donor-to-acceptor pairs (DAP) transition at low temperature. Severe PL quenching at temperatures above 41 K is attributed to the opening of non-radiative recombination channels from the defects associated with non-stoichiometric elemental ratio. Therefore, further enhancement of power conversion efficiency can be achieved by better control of stoichiometry. Accepted version
- Published
- 2014
28. The large area radio galaxy evolution spectroscopic survey (LARGESS)
- Author
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Ching, John Ho Yuen
- Subjects
Astrophysics::High Energy Astrophysical Phenomena ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Astrophysics::Galaxy Astrophysics - Abstract
This thesis describes the construction of the Large Area Radio Galaxy Evolution Spectroscopic Survey (LARGESS) sample, which is designed to study the population of high- and low- excitation radio galaxies (HERGs and LERGs respectively) out to moderate redshifts (z
- Published
- 2014
29. GATA1-mutant clones are frequent and often unsuspected in babies with Down syndrome: identification of a population at risk of leukemia
- Author
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Irene, Roberts, Kate, Alford, Georgina, Hall, Gaetan, Juban, Helen, Richmond, Alice, Norton, Grant, Vallance, Kelly, Perkins, Emanuele, Marchi, Simon, McGowan, Anindita, Roy, Gillian, Cowan, Mark, Anthony, Amit, Gupta, John, Ho, Sabita, Uthaya, Anna, Curley, Shree Vishna, Rasiah, Timothy, Watts, Richard, Nicholl, Alison, Bedford-Russell, Raoul, Blumberg, Angela, Thomas, Brenda, Gibson, Chris, Halsey, Pek-Wan, Lee, Sunit, Godambe, Connor, Sweeney, Neha, Bhatnagar, Anne, Goriely, Peter, Campbell, and Paresh, Vyas
- Subjects
Myelopoiesis ,Clinical Trials and Observations ,DNA Mutational Analysis ,Infant, Newborn ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,Neoplastic Cells, Circulating ,Sensitivity and Specificity ,Clone Cells ,Cell Transformation, Neoplastic ,Neonatal Screening ,Leukemia, Myeloid ,Risk Factors ,Acute Disease ,Mutation ,Preleukemia ,Humans ,GATA1 Transcription Factor ,Genetic Testing ,Down Syndrome ,Chromatography, High Pressure Liquid - Abstract
Transient abnormal myelopoiesis (TAM), a preleukemic disorder unique to neonates with Down syndrome (DS), may transform to childhood acute myeloid leukemia (ML-DS). Acquired GATA1 mutations are present in both TAM and ML-DS. Current definitions of TAM specify neither the percentage of blasts nor the role of GATA1 mutation analysis. To define TAM, we prospectively analyzed clinical findings, blood counts and smears, and GATA1 mutation status in 200 DS neonates. All DS neonates had multiple blood count and smear abnormalities. Surprisingly, 195 of 200 (97.5%) had circulating blasts. GATA1 mutations were detected by Sanger sequencing/denaturing high performance liquid chromatography (Ss/DHPLC) in 17 of 200 (8.5%), all with blasts >10%. Furthermore low-abundance GATA1 mutant clones were detected by targeted next-generation resequencing (NGS) in 18 of 88 (20.4%; sensitivity ∼0.3%) DS neonates without Ss/DHPLC-detectable GATA1 mutations. No clinical or hematologic features distinguished these 18 neonates. We suggest the term "silent TAM" for neonates with DS with GATA1 mutations detectable only by NGS. To identify all babies at risk of ML-DS, we suggest GATA1 mutation and blood count and smear analyses should be performed in DS neonates. Ss/DPHLC can be used for initial screening, but where GATA1 mutations are undetectable by Ss/DHPLC, NGS-based methods can identify neonates with small GATA1 mutant clones.
- Published
- 2013
30. Viewpoint: management of the patient with an 'incidentally' raised troponin
- Author
-
John Ho
- Subjects
Acute coronary syndrome ,medicine.medical_specialty ,Chest Pain ,Myocardial Infarction ,Context (language use) ,macromolecular substances ,Critical Care and Intensive Care Medicine ,Chest pain ,Troponin T ,Internal Medicine ,medicine ,Humans ,Acute Coronary Syndrome ,Intensive care medicine ,biology ,business.industry ,Myocardium ,Troponin I ,General Medicine ,musculoskeletal system ,medicine.disease ,Troponin ,Risk stratification ,Emergency Medicine ,biology.protein ,medicine.symptom ,business ,Biomarkers - Abstract
Troponin assays are a valuable tool in early risk stratification of patients with ischaemic sounding chest pain. However, troponin is often measured outside of this clinical context. The finding of a raised troponin value may be misinterpreted as an acute coronary syndrome leading to unnecessary and sometimes dangerous anticoagulation. This article looks at some of the considerations which need to be made when interpreting the significance of a raised troponin value.
- Published
- 2011
31. Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals
- Author
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Ding, Yu, primary, Wang, Juan, additional, Chun Lai, John Ho, additional, Ling Chan, Vivian Hoi, additional, Wang, Xiangfeng, additional, Cai, Yi, additional, Tan, Xiaoyun, additional, Bao, Yiqun, additional, Xia, Jun, additional, Robinson, David G., additional, and Jiang, Liwen, additional
- Published
- 2014
- Full Text
- View/download PDF
32. Naturally occurring protease inhibitor resistance mutations and their frequencies in HIV proviral sequences of drug-naïve sex workers in Nairobi, Kenya
- Author
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Binhua Liang, Terry B. Ball, David La, Elnaz Shadabi, Joshua Kimani, Ma Luo, Francis A. Plummer, Raghavan Sampathkumar, and John Ho
- Subjects
Mutation ,business.industry ,virus diseases ,Lopinavir ,Fosamprenavir ,Drug resistance ,medicine.disease_cause ,Virology ,Drug-naïve ,Nelfinavir ,Infectious Diseases ,Indinavir ,Immunology ,Poster Presentation ,medicine ,Protease inhibitor (pharmacology) ,business ,medicine.drug - Abstract
Sub-Saharan Africa accounts for 69% of the people living with HIV globally. An estimated 1,600,000 Kenyans are living with HIV-1. Antiretroviral therapy (ART) has saved 9 million life-years in Sub-Saharan Africa. However, drug resistance mutations reduce the effectiveness of ART, and need to be monitored for effective ART. Naturally occurring primary antiretroviral drug resistance mutations have not been well analyzed in ART naive HIV+ patients in Kenya. Here we have examined protease inhibitor (PI) resistance mutations in ART naive HIV-1 seropositive women in Pumwani sex worker cohort established in Nairobi, Kenya, wherein HIV-1 infection is predominantly caused by subtypes A and D viruses. We have analyzed consensus sequences of HIV protease from 109 drug-naive patients, as a part of HIV-1 whole-genome sequencing using 454 sequencing methodology. Analysis using HIVdb program revealed a prevalence of 22% (24/109) PI resistance mutations among the study subjects. D30N (3.7%), M46I (0.9%) and V82F (0.9%) are the major mutations observed. D30N mutation is known to confer high-level resistance to nelfinavir. M46I and V82F confer resistance to indinavir, lopinavir, fosamprenavir and nelfinavir. In addition, many minor mutations were found at seven different drug resistance sites. It is important to study the implications of these mutations to the effectiveness of specific PI drug treatment. This study provides valuable data pertaining to primary drug resistance in Kenyan HIV-1 infected patients before ART became available.
- Published
- 2014
33. An Unusual Case of Fever and Lymphadenopathy
- Author
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John Ho
- Subjects
medicine.medical_specialty ,Unusual case ,Axillary lymph nodes ,business.industry ,General Medicine ,Critical Care and Intensive Care Medicine ,Surgery ,chemistry.chemical_compound ,medicine.anatomical_structure ,Silicone ,chemistry ,Emergency Medicine ,Internal Medicine ,medicine ,Medical team ,Silicone breast implant ,Presentation (obstetrics) ,business ,Radiological imaging - Abstract
A 62 year old female presented to the acute medical team with headache, fevers and enlarged axillary lymph nodes. Initial biochemical, microbiological and immunological investigations were normal. However, radiological imaging revealed that her silicone breast implants had ruptured, which may have been responsible for her presentation. A brief overview of the clinical features and management of silicone breast implant rupture is provided.
- Published
- 2009
34. Layer Area, Few-Layer Graphene Films on Arbitrary Substrates by Chemical Vapor Deposition
- Author
-
Alfonso Reina, Xiaoting Jia, John Ho, Daniel Nezich, Hyungbin Son, Vladimir Bulovic, Mildred S. Dresselhaus, and Jing Kong
- Subjects
Mechanical Engineering ,General Materials Science ,Bioengineering ,General Chemistry ,Condensed Matter Physics - Published
- 2009
35. Staphylococcal enterotoxins G and I: A cause of severe neonatal enteropathy?
- Author
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Sandhia Naik, N Meadows, Fabienne Smith, John Ho, Nicholas M. Croft, Paola Domizio, Elisabeth Price, and Ian R. Sanderson
- Subjects
Hepatology ,business.industry ,Staphylococcal Enterotoxins ,Immunology ,Gastroenterology ,Medicine ,Enteropathy ,business ,medicine.disease - Published
- 2003
36. Constitutive modeling of thermomechanical response of materials in semiconductor devices with emphasis on interface behavior.
- Author
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Kundu, T., Prince, J., Budhu, M., Armaleh, Sonia Hanna, Chia, John-Ho, Kundu, T., Prince, J., Budhu, M., Armaleh, Sonia Hanna, and Chia, John-Ho
- Abstract
A unified constitutive modeling approach is developed based on the disturbed state concept (DSC) with the hierarchical single yield surface plasticity (HiSS) based models. With this approach, various factors such as elastic, plastic, and creep strain, as well as damage due to microcracking and fracture are considered as disturbances, and incorporated in a basic model in a hierarchical manner. As a result, the approach provides flexibility to adopt various versions of the model depending on the need of users. Two thermomechanical constitutive models are developed as the special versions of the reference DSC model. The thermoplastic model, δ(θ), presented here describes the hardening response of materials/interfaces during monotonic as well as cyclic thermomechanical loads. In addition to the thermoplastic model, a thermoviscoplastic model, δ(vθ), presented here is used to simulate creep and stress relaxation mechanisms at elevated temperatures; here the rate effect on the hysteresis response is incorporated in the incremental constitutive equations. This model can allow for arbitrary stress-strain histories and can be used for investigation of the time dependence of low-cycle fatigue life prediction of solder materials. The temperature dependence of material constants are found using available laboratory tests, and are expressed by using simple power functions. These models have the merit of being relatively simple, and they can be readily adapted in nonlinear finite element codes. Verifications and applications of different versions of DSC model are obtained for solder materials in semiconductor devices. Novel applications in fatigue life prediction are described, including different fatigue failure criteria that may not be readily captured by most previously proposed constitutive models.
- Published
- 1994
37. The frequencies of naturally occurring protease inhibitor resistance mutations in HIV proviral sequences of drug naïve sex workers in Nairobi, Kenya and their correlation with host immune response driven positively selected mutations in HIV-1
- Author
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Raghavan Sampathkumar, Elnaz Shadabi, Ma Luo, John Ho, David La, Francis A. Plummer, Joshua Kimani, and Binhua Liang
- Subjects
medicine.medical_specialty ,Veterinary medicine ,Host (biology) ,Human immunodeficiency virus (HIV) ,Drug resistance ,Biology ,medicine.disease_cause ,Virology ,Drug-naïve ,Medical microbiology ,Immune system ,Infectious Diseases ,Parasitology ,parasitic diseases ,medicine ,Oral Presentation ,Protease inhibitor (pharmacology) ,medicine.drug - Abstract
Background Sub Saharan Africa accounts for 69% of the people living with HIV globally. Antiretroviral therapy (ART) has saved 9 million life years in Sub Saharan Africa. However, drug resistance mutations reduce the effectiveness of ART, and need to be monitored for effective ART. Naturally occurring primary antiretroviral drug resistance mutations have not been well analyzed in ART naive HIV+ patients from Kenya.
- Full Text
- View/download PDF
38. Reply to Ojha et al.
- Author
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Machado, Paulo, John Ho, Heejung Bang, Guimarães, Luiz, and Carvalho, Edgar M.
- Subjects
- *
LETTERS to the editor , *PENTOXIFYLLINE - Abstract
A response by P.R. Machado to a letter to the editor about his article on the effectiveness of oral pentoxifylline and pentavalent antimony therapy in treating leishmaniasis is presented.
- Published
- 2007
- Full Text
- View/download PDF
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