1,657 results on '"Keister A"'
Search Results
2. ENSO impacts on ecosystem indicators in the California Current System
- Author
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OHMAN, Mark D, Mantua, Nate, Keister, Julie, Garcia-Reyes, Marisol, and McClatchie, Sam
- Subjects
ENSO ,El Nino ,ecosystem ,Caliifornia Current System ,Harmful Algal Blooms ,phytoplankton ,zooplankton ,euphausiids ,krill ,anchovy ,sardine - Abstract
El Niño-Southern Oscillation (ENSO) events activate long-distance teleconnections through the atmosphere and ocean that can dramatically impact marine ecosystems along the West Coast of NorthAmerica, affecting diverse organisms ranging from plankton to exploitable and protected species. Such ENSO-related changes to marine ecosystems can ultimately affect humans in many ways, including via depressed plankton and fish production, dramatic range shifts formany protected and exploited species, inaccessibility of traditionally fished resources, more prevalent harmful algal blooms, altered oxygen and pH of waters used in mariculture, and proliferation of pathogens. Theprincipal objective of the Forecasting ENSO Impacts on Marine Ecosystems of the US West Coast workshop was to develop a scientific framework for building an ENSO-related forecast system of ecosystem indicators along the West Coast of North America, including major biological and biogeochemical responses. Attendees realized thata quantitative, biologically-focused forecast system is a much more challenging objective than forecasting the physical system alone; it requires an understanding of the ocean-atmospheric physical system and of diverse organism-level, population-level, and geochemicalresponses that, in aggregate, lead to altered ecosystem states.
- Published
- 2023
3. Differences in boundary behavior in the 3D vertex and Voronoi models
- Author
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Lawson-Keister, Elizabeth, Zhang, Tao, and Manning, M. Lisa
- Subjects
Quantitative Biology - Tissues and Organs ,Condensed Matter - Soft Condensed Matter - Abstract
An important open question in the modeling of biological tissues is how to identify the right scale for coarse-graining, or equivalently, the right number of degrees of freedom. For confluent biological tissues, both vertex and Voronoi models, which differ only in their representation of the degrees of freedom, have effectively been used to predict behavior, including fluid-solid transitions and cell tissue compartmentalization, which are important for biological function. However, recent work in 2D has hinted that there may be differences between the two models in systems with heterotypic interfaces between two tissue types, and there is a burgeoning interest in 3D tissue models. Therefore, we compare the geometric structure and dynamic sorting behavior in mixtures of two cell types in both 3D vertex and Voronoi models. We find that while the cell shape indices exhibit similar trends in both models, the registration between cell centers and cell orientation at the boundary are significantly different between the two models. We demonstrate that these macroscopic differences are caused by changes to the cusp-like restoring forces introduced by the different representations of the degrees of freedom at the boundary, and that the Voronoi model is more strongly constrained by forces that are an artifact of the way the degrees of freedom are represented. This suggests that vertex models may be more appropriate for 3D simulations of tissues with heterotypic contacts., Comment: 10 pages, 5 figures
- Published
- 2023
4. Longitudinal Interleaved Residency Training: A Consensus Definition.
- Author
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Zeller, T, Beben, Katherine, Martonffy, Ildi, Patterson, Seth, Deas, Weldon, Heo, Moonseong, Keister, Drew, and Kong, Marianna
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Humans ,Internship and Residency ,Curriculum ,Consensus ,Employment ,Family Practice - Abstract
BACKGROUND AND OBJECTIVES: Cognitive benefits of longitudinal curricula and interleaving have been demonstrated in several disciplines. However, most residency curricula are structured in a block format. There is no consensus definition as to what constitutes a longitudinal program, making comparative research on curricular efficacy a challenge. The objective of our study was to arrive at a consensus definition of Longitudinal Interleaved Residency Training (LIRT) in family medicine. METHODS: A national workgroup was convened and utilized a Delphi method between October 2021 and March 2022 to arrive at a consensus definition. RESULTS: Twenty-four invitations were sent, and 18 participants initially accepted. The final workgroup (n=13) was representative of the nationwide diversity of family medicine residency programs in terms of geographic location (P=.977) and population density (P=.123). The following definition was approved: LIRT is a curricular design and program structure that offers graduated, concurrent clinical experiences in the core competencies of the specialty. LIRT models the comprehensive scope of practice and continuity that defines the specialty; applies training methods that enhance long-term retention of knowledge, skills, and attitudes across all dimensions and locations of care delivery; and accomplishes program objectives through employment of longitudinal curricular scheduling and interleaving with spaced repetition. Additional technical criteria and definitions of terms are elucidated in the body of this article. CONCLUSIONS: A representative national workgroup crafted a consensus definition of Longitudinal Interleaved Residency Training (LIRT) in family medicine, a program structure with a basis in emerging evidence-based cognitive science.
- Published
- 2023
5. Diffusion of activated ATM explains γH2AX and MDC1 spread beyond the DNA damage site
- Author
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Georgi Danovski, Greta Panova, Bradley Keister, Georgi Georgiev, Aleksandar Atemin, Sonya Uzunova, Rumen Stamatov, Petar-Bogomil Kanev, Radoslav Aleksandrov, Krastan B. Blagoev, and Stoyno S. Stoynov
- Subjects
Chromosome organization ,Molecular biology ,Nucleic acids ,Science - Abstract
Summary: During DNA repair, ATM-induced H2AX histone phosphorylation and MDC1 recruitment spread megabases beyond the damage site. While loop extrusion has been suggested to drive this spread, the underlying mechanism remains unclear. Herein, we provide two lines of evidence that loop extrusion is not the only driver of damage-induced γH2AX spread. First, cohesin loader NIPBL and cohesin subunit RAD21 accumulate considerably later than the phosphorylation of H2AX and MDC1 recruitment at micro-IR-induced damage. Second, auxin-induced RAD21 depletion does not affect γH2AX/MDC1 spread following micro-irradiation or DSB induction by zeocin. To determine if diffusion of activated ATM could account for the observed behavior, we measured the exchange rate and diffusion constants of ATM and MDC1 within damaged and unperturbed chromatin. Using these measurements, we introduced a quantitative model in which the freely diffusing activated ATM phosphorylates H2AX. This model faithfully describes the dynamics of ATM and subsequent γH2AX/MDC1 spread at complex DNA lesions.
- Published
- 2024
- Full Text
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6. Diffusion of activated ATM explains γH2AX and MDC1 spread beyond the DNA damage site
- Author
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Danovski, Georgi, Panova, Greta, Keister, Bradley, Georgiev, Georgi, Atemin, Aleksandar, Uzunova, Sonya, Stamatov, Rumen, Kanev, Petar-Bogomil, Aleksandrov, Radoslav, Blagoev, Krastan B., and Stoynov, Stoyno S.
- Published
- 2024
- Full Text
- View/download PDF
7. Review: Preclinical Models of Large‐Vessel Occlusion Stroke
- Author
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Alexander Keister, Arianna Carfora, Mayur S. Patel, Amanda S. Zakeri, Lillian Mannix, Debra G. Wheeler, Paco S. Herson, and Shahid M. Nimjee
- Subjects
animal models ,large‐vessel occlusion ,murine ,preclinical stroke ,stroke ,Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Preclinical models of large‐vessel occlusion (LVO) stroke play an important role in testing novel thrombolytic and neuroprotective agents, as well as assessing endovascular devices for endovascular thrombectomy. Depending on the modality used to model LVO stroke, different aspects of human stroke pathophysiology can be recapitulated. Thus, variables including size and region of the occlusion, composition of the clot, and degree of reperfusion can be controlled. We conducted a thorough literature review of all the preclinical models of stroke used currently. We searched for studies using the PubMed database and included original studies, reviews, systematic reviews, and meta‐analyses. In this review, we describe the considerations in choosing a preclinical model of LVO stroke. We provide an overview of available small‐ and large‐animal LVO stroke models that can be used in stroke research as well as the benefits and limitations of each. We then discuss the current outcome measures that can be evaluated through these models, in terms of both tissue damage and behavioral outcome. We also discuss the advantages and disadvantages of each animal model. Finally, based on this summary, we propose that mice represent the most versatile small‐animal LVO model and dogs are the most appropriate large‐animal LVO stroke model to translate candidate drugs and devices into clinical trials.
- Published
- 2024
- Full Text
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8. Evaluating Metabarcoding Markers for Identifying Zooplankton and Ichthyoplankton Communities to Species in the Salish Sea: Morphological Comparisons and Rare, Threatened or Invasive Species
- Author
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Carol A. Stepien, Haila K. Schultz, Sean M. McAllister, Emily L. Norton, and Julie E. Keister
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copepods ,genetic marker ,ichthyoplankton ,larvae ,metabarcoding ,MiSeq ,Biochemistry ,QD415-436 - Abstract
Zooplankton and ichthyoplankton community assessments depend on species diagnostics, yet morphological identifications are time-consuming, require taxonomic expertise, and are hampered by a lack of diagnostic characters, particularly for larval stages. Metabarcoding can identify multiple species in communities from short DNA sequences in comparison to reference databases. To evaluate species resolution across phylogenetic groups and food webs of zooplankton and ichthyoplankton, we compare five metabarcode mitochondrial (mt)DNA markers from gene regions of (a) cytochrome c oxidase subunit I, (b) cytochrome b, (c) 16S ribosomal RNA, and (d) 12S ribosomal RNA for DNA extracted from net tows in the Northeastern Pacific Ocean’s Salish Sea across seven sites and two seasons. Species resolved by metabarcoding are compared to invertebrate morphological identifications and biomass estimates. Results indicate that species resolution for different zooplankton and ichthyoplankton taxa can markedly vary among gene regions and markers in comparison to morphological identifications. Thus, researchers seeking “universal” metabarcoding should take caution that several markers and gene regions likely will be needed; all will miss some taxa and yield incomplete overlap. Species resolution requires careful attention to taxon marker selection and coverage in reference sequence repositories. In summary, combined multi-marker metabarcoding and morphological approaches improve broadscale zooplankton diagnostics.
- Published
- 2023
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9. Measurement of the generalized spin polarizabilities of the neutron in the low $Q^2$ region
- Author
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Sulkosky, V., Peng, C., Chen, J. -P., Deur, A., Abrahamyan, S., Aniol, K. A., Armstrong, D. S., Averett, T., Bailey, S. L., Beck, A., Bertin, P., Butaru, F., Boeglin, W., Camsonne, A., Cates, G. D., Chang, C. C., Choi, Seonho, Chudakov, E., Coman, L., Cornejo, J. C, Craver, B., Cusanno, F., De Leo, R., de Jager, C. W., Denton, J. D., Dhamija, S., Feuerbach, R., Finn, J. M., Frullani, S., Fuoti, K., Gao, H., Garibaldi, F., Gayou, O., Gilman, R., Glamazdin, A., Glashausser, C., Gomez, J., Hansen, J. -O., Hayes, D., Hersman, B., Higinbotham, D. W., Holmstrom, T., Humensky, T. B., Hyde, C. E., Ibrahim, H., Iodice, M., Jiang, X., Kaufman, L. J., Kelleher, A., Keister, K. E., Kim, W., Kolarkar, A., Kolb, N., Korsch, W., Kramer, K., Kumbartzki, G., Lagamba, L., Laine, V., Laveissiere, G., Lerose, J. J., Lhuillier, D., Lindgren, R., Liyanage, N., Lu, H. -J., Ma, B., Margaziotis, D. J., Markowitz, P., McCormick, K., Meziane, M., Meziani, Z. -E., Michaels, R., Moffit, B., Monaghan, P., Nanda, S., Niedziela, J., Niskin, M., Pandolfi, R., Paschke, K. D., Potokar, M., Puckett, A., Punjabi, V. A., Qiang, Y., Ransome, R., Reitz, B., Roche, R., Saha, A., Shabetai, A., Sirca, S., Singh, J. T., Slifer, K., Snyder, R., Solvignon, P., Stringer, R., Subedi, R., Tobias, W. A., Ton, N., Ulmer, P. E., Urciuoli, G. M., Vacheret, A., Voutier, E., Wang, K., Wan, L., Wojtsekhowski, B., Woo, S., Yao, H., Yuan, J., Zhan, X., Zheng, X., and Zhu, L.
- Subjects
Nuclear Experiment - Abstract
Understanding the nucleon spin structure in the regime where the strong interaction becomes truly strong poses a challenge to both experiment and theory. At energy scales below the nucleon mass of about 1 GeV, the intense interaction among the quarks and gluons inside the nucleon makes them highly correlated. Their coherent behaviour causes the emergence of effective degrees of freedom, requiring the application of non-perturbative techniques, such as chiral effective field theory. Here, we present measurements of the neutron's generalized spin-polarizabilities that quantify the neutron's spin precession under electromagnetic fields at very low energy-momentum transfer squared down to 0.035 GeV$^2$. In this regime, chiral effective field theory calculations are expected to be applicable. Our data, however, show a strong discrepancy with these predictions, presenting a challenge to the current description of the neutron's spin properties., Comment: V1: initial version submitted to Nature Physics. V2: Published version. 16 pages, 7 figures. Additional material: 4 data tables (18 pages) V3: Typo corrected in author list. Paper content unchanged
- Published
- 2021
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10. Jamming and arrest of cell motion in biological tissues
- Author
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Lawson-Keister, Elizabeth and Manning, M. Lisa
- Subjects
Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter - Abstract
Collective cell motility is crucial to many biological processes including morphogenesis, wound healing, and cancer invasion. Recently, the biology and biophysics communities have begun to use the term cell jamming to describe the collective arrest of cell motion in tissues. Although this term is widely used, the underlying mechanisms are varied. In this review, we highlight three independent mechanisms that can potentially drive arrest of cell motion -- crowding, tension-driven rigidity, and reduction of fluctuations -- and propose a speculative phase diagram that includes all three. Since multiple mechanisms may be operating simultaneously, this emphasizes that experiments should strive to identify which mechanism dominates in a given situation. We also discuss how specific cell-scale and molecular-scale biological processes, such as cell-cell and cell-substrate interactions, control aspects of these underlying physical mechanisms., Comment: 15 pages, 2 figures
- Published
- 2021
11. The complete mitochondrial genome of Cyphocaris challengeri (Amphipoda: Cyphocarididae)
- Author
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Chloe N. Rabinowitz, Shannon D. Brown, Sean M. McAllister, Amanda K. Winans, Julie E. Keister, and Matthew P. Galaska
- Subjects
mitogenome ,mtdna ,next-generation sequencing ,lysianassoidea ,Genetics ,QH426-470 - Abstract
The amphipod Cyphocaris challengeri is a globally distributed, highly abundant species of zooplankton. Here, we report the complete mitochondrial genome of C. challengeri obtained using the Illumina sequencing platform from a specimen collected from Puget Sound, Washington. The mitogenome is a circular DNA molecule with a size of 14,338 bp and 26.7% GC content, with 13 protein-encoding genes, 2 rRNAs, and 22 tRNAs annotated. A maximum likelihood phylogenetic analysis including C. challengeri and all other available mitogenomes from Amphipoda places our mitogenome firmly within the Lysianassoidea superfamily, as expected. The newly described mitochondrial genome of C. challengeri fills a gap in valuable reference data for detecting this organism using molecular methods such as environmental DNA.
- Published
- 2023
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12. Effect of nanosecond pulsed electric fields (nsPEFs) on coronavirus survival
- Author
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Jody C. Cantu, Ronald A. Barnes, Bryan M. Gamboa, Allen S. Keister, Ibtissam Echchgadda, and Bennett L. Ibey
- Subjects
Coronavirus ,Decontamination ,Neutralization ,Nanosecond electric pulses ,Biotechnology ,TP248.13-248.65 ,Microbiology ,QR1-502 - Abstract
Abstract Previous work demonstrated inactivation of influenza virus by GHz frequency electromagnetic fields. Despite theoretical and experimental results, the underlying mechanism driving this inactivation remains unknown. One hypothesis is that the electromagnetic field is causing damage to the virion membrane (and therefore changing spike protein orientation) rendering the virus unable to attach and infect host cells. Towards examining this hypothesis, our group employed nanosecond pulsed electric fields (nsPEFs) as a surrogate to radiofrequency (RF) exposure to enable exploration of dose response thresholds of electric field-induced viral membrane damage. In summary, Bovine coronavirus (BCoV) was exposed, in suspension, to mono and bipolar 600-ns pulsed electric fields (nsPEFs) at two amplitudes (12.5 and 25 kV/cm) and pulse numbers [0 (sham), 1, 5, 10, 100, and 1000] at a 1 Hz (Hz) repetition rate. The temperature rise immediately after exposure(s) was measured using thermocouples to differentiate effects of the electric field (E-field) and heating (i.e., the thermal gradient). Inactivation of BCoV was evaluated by infecting HRT-18G host cells and assessing differences in virus infectivity days after exposure. Our results show that 600 nsPEFs, both bipolar and monopolar, can reduce the infectivity of coronaviruses at various amplitudes, pulse numbers, and pulse polarity. Interestingly, we observed that bipolar exposures appeared to be more efficient at lower exposure intensities than monopolar pulses. Future work should focus on experiments to identify the mechanism underlying nsPEF-induced viral inactivation.
- Published
- 2023
- Full Text
- View/download PDF
13. A novel technique for decortication of the lumbar facet joints for posterolateral fusion with percutaneous exposure: A cadaveric feasibility study
- Author
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Alexander Keister, Olivia Duru, Andrew Grossbach, and David S. Xu
- Subjects
Interbody fusion ,Percutaneous ,Minimally invasive ,Facet joint ,Decortication ,Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Percutaneous approaches to the spine have been explored recently for various procedures, including transforaminal lumbar interbody fusion. It is known that facet decortication leads to higher rates of fusion, but effective percutaneous approaches have not been well documented. There are a set of instruments used in the cervical spine for percutaneous decortication, the CORUS™ Spinal System-X (DI# 00852776006508), which may be useful in this setting. Our aim was to investigate the feasibility of decorticating the lumbar facet joints with these instruments in cadavers to aid in minimally invasive lumbar fusion. Methods: We performed percutaneous facet joint decortication at each facet joint in the lumbar spine in two adult cadavers. We tested varying degrees of laterality for entry points and angulation for access at each level to optimize the innovative procedure. Results: When using the CORUS™ Spinal System-X to obtain percutaneous access for facet decortication in the lumbar spine, we successfully dissected down to the facet joint without neurovascular injury. At the L1-L2 and L2-L3 levels, access was best obtained at 4 cm from midline with an angulation of 10°. At the L3-L4 and L4-L5 level, access was best obtained at 4 cm from midline with an angulation of 20°. Conclusions: This study demonstrates that percutaneous lumbar facet joint decortication is feasible with the CORUS™ Spinal System-X instruments, and warrants further, comparative study in the clinical setting
- Published
- 2024
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14. Effect of nanosecond pulsed electric fields (nsPEFs) on coronavirus survival
- Author
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Cantu, Jody C., Barnes, Ronald A., Gamboa, Bryan M., Keister, Allen S., Echchgadda, Ibtissam, and Ibey, Bennett L.
- Published
- 2023
- Full Text
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15. Heterotrophy, microbiome, and location effects on restoration efficacy of the threatened coral Acropora palmata
- Author
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Chapron, Leila, Kuffner, Ilsa B., Kemp, Dustin W., Hulver, Ann M., Keister, Elise F., Stathakopoulos, Anastasios, Bartlett, Lucy A., Lyons, Erin O., and Grottoli, Andréa G.
- Published
- 2023
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- View/download PDF
16. Similarities in biomass and energy reserves among coral colonies from contrasting reef environments
- Author
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Keister, Elise F., Gantt, Shelby E., Reich, Hannah G., Turnham, Kira E., Bateman, Timothy G., LaJeunesse, Todd C., Warner, Mark E., and Kemp, Dustin W.
- Published
- 2023
- Full Text
- View/download PDF
17. ENSO impacts on ecosystem indicators in the California Current System
- Author
-
OHMAN, Mark D, Mantua, Nate, Keister, Julie, Garcia-Reyes, Marisol, and McClatchie, Sam
- Subjects
ENSO ,El Nino ,ecosystem ,Caliifornia Current System ,Harmful Algal Blooms ,phytoplankton ,zooplankton ,euphausiids ,krill ,anchovy ,sardine - Abstract
El Niño-Southern Oscillation (ENSO) events activate long-distance teleconnections through the atmosphere and ocean that can dramatically impact marine ecosystems along the West Coast of NorthAmerica, affecting diverse organisms ranging from plankton to exploitable and protected species. Such ENSO-related changes to marine ecosystems can ultimately affect humans in many ways, including via depressed plankton and fish production, dramatic range shifts formany protected and exploited species, inaccessibility of traditionally fished resources, more prevalent harmful algal blooms, altered oxygen and pH of waters used in mariculture, and proliferation of pathogens. Theprincipal objective of the Forecasting ENSO Impacts on Marine Ecosystems of the US West Coast workshop was to develop a scientific framework for building an ENSO-related forecast system of ecosystem indicators along the West Coast of North America, including major biological and biogeochemical responses. Attendees realized thata quantitative, biologically-focused forecast system is a much more challenging objective than forecasting the physical system alone; it requires an understanding of the ocean-atmospheric physical system and of diverse organism-level, population-level, and geochemicalresponses that, in aggregate, lead to altered ecosystem states.
- Published
- 2021
18. Heterotrophy, microbiome, and location effects on restoration efficacy of the threatened coral Acropora palmata
- Author
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Leila Chapron, Ilsa B. Kuffner, Dustin W. Kemp, Ann M. Hulver, Elise F. Keister, Anastasios Stathakopoulos, Lucy A. Bartlett, Erin O. Lyons, and Andréa G. Grottoli
- Subjects
Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract The iconic and threatened Caribbean coral, Acropora palmata, is an essential reef-ecosystem engineer. Understanding the processes underpinning this coral’s survival and growth is essential to restoring this foundational species. Here, we compared replicate A. palmata colonies transplanted along 350 km of Florida’s offshore coral reef to determine holobiont and/or environmental variables that predict transplant success. We found a west-to-east gradient in coral physiology coupled with site-specific coral-associated microbiomes. Interestingly, no variables were linked to coral genet. Our results suggest that the unique oceanographic conditions with periodic upwelling events in the Dry Tortugas provide corals with greater opportunity for heterotrophy that in turn enhances coral growth and survivorship, and positively influences the microbiome. Our findings indicate that restoration efforts in the Dry Tortugas, and other places exhibiting higher food availability, could be most effective for A. palmata.
- Published
- 2023
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19. Rural Kids and Wealth
- Author
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KEISTER, LISA A., MOODY, JAMES W., and WOLFF, TOM
- Published
- 2022
20. Elevated heterotrophic capacity as a strategy for Mediterranean corals to cope with low pH at CO2 vents.
- Author
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Ann Marie Hulver, Chloé Carbonne, Nuria Teixidó, Steeve Comeau, Dustin W Kemp, Elise F Keister, Jean-Pierre Gattuso, and Andréa G Grottoli
- Subjects
Medicine ,Science - Abstract
The global increase in anthropogenic CO2 is leading to ocean warming and acidification, which is threatening corals. In Ischia, Italy, two species of Mediterranean scleractinian corals-the symbiotic Cladocora caespitosa and the asymbiotic Astroides calycularis-were collected from ambient pH sites (average pHT = 8.05) and adjacent CO2 vent sites (average pHT = 7.8) to evaluate their response to ocean acidification. Coral colonies from both sites were reared in a laboratory setting for six months at present day pH (pHT ~ 8.08) or low pH (pHT ~7.72). Previous work showed that these corals were tolerant of low pH and maintained positive calcification rates throughout the experiment. We hypothesized that these corals cope with low pH by increasing their heterotrophic capacity (i.e., feeding and/or proportion of heterotrophically derived compounds incorporated in their tissues), irrespective of site of origin, which was quantified indirectly by measuring δ13C, δ15N, and sterols. To further characterize coral health, we quantified energy reserves by measuring biomass, total lipids, and lipid classes. Additional analysis for C. caespitosa included carbohydrates (an energy reserve) and chlorophyll a (an indicator of photosynthetic capacity). Isotopic evidence shows that ambient-sourced Mediterranean corals, of both species, decreased heterotrophy in response to six months of low pH. Despite maintaining energy reserves, lower net photosynthesis (C. caespitosa) and a trend of declining calcification (A. calycularis) suggest a long-term cost to low heterotrophy under ocean acidification conditions. Conversely, vent-sourced corals maintained moderate (C. caespitosa) or high (A. calycularis) heterotrophic capacity and increased photosynthesis rates (C. caespitosa) in response to six months at low pH, allowing them to sustain themselves physiologically. Provided there is sufficient zooplankton and/or organic matter to meet their heterotrophic needs, vent-sourced corals are more likely to persist this century and potentially be a source for new corals in the Mediterranean.
- Published
- 2024
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21. Differences in boundary behavior in the 3D vertex and Voronoi models.
- Author
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Elizabeth Lawson-Keister, Tao Zhang, Fatemeh Nazari, François Fagotto, and M Lisa Manning
- Subjects
Biology (General) ,QH301-705.5 - Abstract
An important open question in the modeling of biological tissues is how to identify the right scale for coarse-graining, or equivalently, the right number of degrees of freedom. For confluent biological tissues, both vertex and Voronoi models, which differ only in their representation of the degrees of freedom, have effectively been used to predict behavior, including fluid-solid transitions and cell tissue compartmentalization, which are important for biological function. However, recent work in 2D has hinted that there may be differences between the two models in systems with heterotypic interfaces between two tissue types, and there is a burgeoning interest in 3D tissue models. Therefore, we compare the geometric structure and dynamic sorting behavior in mixtures of two cell types in both 3D vertex and Voronoi models. We find that while the cell shape indices exhibit similar trends in both models, the registration between cell centers and cell orientation at the boundary are significantly different between the two models. We demonstrate that these macroscopic differences are caused by changes to the cusp-like restoring forces introduced by the different representations of the degrees of freedom at the boundary, and that the Voronoi model is more strongly constrained by forces that are an artifact of the way the degrees of freedom are represented. This suggests that vertex models may be more appropriate for 3D simulations of tissues with heterotypic contacts.
- Published
- 2024
- Full Text
- View/download PDF
22. Measurement of the 3He Spin-Structure Functions and of Neutron (3He) Spin-Dependent Sum Rules at 0.035<Q^2<0.24 GeV^2
- Author
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Sulkosky, V., Singh, J. T., Peng, C., Chen, J. -P., Deur, A., Abrahamyan, S., Aniol, K. A., Armstrong, D. S., Averett, T., Bailey, S. L., Beck, A., Bertin, P., Butaru, F., Boeglin, W., Camsonne, A., Cates, G. D., Chang, C. C., Choi, Seonho, Chudakov, E., Coman, L., Cornejo, J. C, Craver, B., Cusanno, F., De Leo, R., de Jager, C. W., Denton, J. D., Dhamija, S., Feuerbach, R., Finn, J. M., Frullani, S., Fuoti, K., Gao, H., Garibaldi, F., Gayou, O., Gilman, R., Glamazdin, A., Glashausser, C., Gomez, J., Hansen, J. -O., Hayes, D., Hersman, B., Higinbotham, D. W., Holmstrom, T., Humensky, T. B., Hyde, C. E., Ibrahim, H., Iodice, M., Jiang, X., Kaufman, L. J., Kelleher, A., Keister, K. E., Kim, W., Kolarkar, A., Kolb, N., Korsch, W., Kramer, K., Kumbartzki, G., Lagamba, L., Laine, V., Laveissiere, G., Lerose, J. J., Lhuillier, D., Lindgren, R., Liyanage, N., Lu, H. -J., Ma, B., Margaziotis, D. J., Markowitz, P., McCormick, K., Meziane, M., Meziani, Z. -E., Michaels, R., Moffit, B., Monaghan, P., Nanda, S., Niedziela, J., Niskin, M., Pandolfi, R., Paschke, K. D., Potokar, M., Puckett, A., Punjabi, V. A., Qiang, Y., Ransome, R., Reitz, B., Roche, R., Saha, A., Shabetai, A., Sirca, S., Slifer, K., Snyder, R., Solvignon, P., Stringer, R., Subedi, R., Tobias, W. A., Ton, N., Ulmer, P. E., Urciuoli, G. M., Vacheret, A., Voutier, E., Wang, K., Wan, L., Wojtsekhowski, B., Woo, S., Yao, H., Yuan, J., Zhan, X., Zheng, X., and Zhu, L.
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Nuclear Experiment ,High Energy Physics - Experiment - Abstract
The spin-structure functions $g_1$ and $g_2$, and the spin-dependent partial cross-section $\sigma_\mathrm{TT}$ have been extracted from the polarized cross-sections differences, $\Delta \sigma_{\parallel}\hspace{-0.06cm}\left(\nu,Q^{2}\right)$ and $\Delta \sigma_{\perp}\hspace{-0.06cm}\left(\nu,Q^{2}\right)$ measured for the $\vec{^\textrm{3}\textrm{He}}(\vec{\textrm{e}},\textrm{e}')\textrm{X}$ reaction, in the E97-110 experiment at Jefferson Lab. Polarized electrons with energies from 1.147 to 4.404 GeV were scattered at angles of 6$^{\circ}$ and 9$^{\circ}$ from a longitudinally or transversely polarized $^{3}$He target. The data cover the kinematic regions of the quasi-elastic, resonance production and beyond. From the extracted spin-structure functions, the first moments $\overline{\Gamma_1}\hspace{-0.06cm}\left(Q^{2}\right)$, $\Gamma_2\hspace{-0.06cm}\left(Q^{2}\right)$ and $I_{\mathrm{TT}}\hspace{-0.06cm}\left(Q^{2}\right)$ are evaluated with high precision for the neutron in the $Q^2$ range from 0.035 to 0.24~GeV$^{2}$. The comparison of the data and the chiral effective field theory predictions reveals the importance of proper treatment of the $\Delta$ degree of freedom for spin observables., Comment: 7 pages, 5 figures, 3 tables. Version published in Phys. Lett. B
- Published
- 2019
- Full Text
- View/download PDF
23. Similarities in biomass and energy reserves among coral colonies from contrasting reef environments
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Elise F. Keister, Shelby E. Gantt, Hannah G. Reich, Kira E. Turnham, Timothy G. Bateman, Todd C. LaJeunesse, Mark E. Warner, and Dustin W. Kemp
- Subjects
Medicine ,Science - Abstract
Abstract Coral reefs are declining worldwide, yet some coral populations are better adapted to withstand reductions in pH and the rising frequency of marine heatwaves. The nearshore reef habitats of Palau, Micronesia are a proxy for a future of warmer, more acidic oceans. Coral populations in these habitats can resist, and recover from, episodes of thermal stress better than offshore conspecifics. To explore the physiological basis of this tolerance, we compared tissue biomass (ash-free dry weight cm−2), energy reserves (i.e., protein, total lipid, carbohydrate content), and several important lipid classes in six coral species living in both offshore and nearshore environments. In contrast to expectations, a trend emerged of many nearshore colonies exhibiting lower biomass and energy reserves than colonies from offshore sites, which may be explained by the increased metabolic demand of living in a warmer, acidic, environment. Despite hosting different dinoflagellate symbiont species and having access to contrasting prey abundances, total lipid and lipid class compositions were similar in colonies from each habitat. Ultimately, while the regulation of colony biomass and energy reserves may be influenced by factors, including the identity of the resident symbiont, kind of food consumed, and host genetic attributes, these independent processes converged to a similar homeostatic set point under different environmental conditions.
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- 2023
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24. Forecasting ENSO impacts on marine ecosystems of the US West Coast: A joint US CLIVAR and OCB workshop report, 2019-1
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Di Lorenzo, Emanuele, Miller, A, Anderson, Clarissa, Karnuaskas, K, Keister, Julie, OHMAN, Mark D, and Subramanian, Aneesh
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ENSO ,El Nino ,marine ecosystems ,forecasting - Published
- 2019
25. Household Wealth and Child Body Mass Index: Patterns and Mechanisms
- Author
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Boen, Courtney, Keister, Lisa A., and Graetz, Nick
- Published
- 2021
- Full Text
- View/download PDF
26. Collective chemotaxis in a Voronoi model for confluent clusters
- Author
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Lawson-Keister, E. and Manning, M.L.
- Published
- 2022
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- View/download PDF
27. Temporal characteristics of plankton indicators in coastal waters: High-frequency data from PlanktonScope
- Author
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Bi, Hongsheng, Song, Junting, Zhao, Jian, Liu, Hui, Cheng, Xuemin, Wang, Linlin, Cai, Zhonghua, Benfield, Mark C., Otto, Saskia, Goberville, Eric, Keister, Julie, Yang, Yong, Yu, Xinglong, Cai, Jun, Ying, Kezhen, and Conversi, Alessandra
- Published
- 2022
- Full Text
- View/download PDF
28. Implementation of a Virtual Interprofessional ICU Learning Collaborative: Successes, Challenges, and Initial Reactions From the Structured Team-Based Optimal Patient-Centered Care for Virus COVID-19 Collaborators
- Author
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Simon Zec, MD, Nika Zorko Garbajs, MD, Yue Dong, MD, Ognjen Gajic, MD, Christina Kordik, MA, Lori Harmon, RRT, MBA, CPHQ, Marija Bogojevic, MD, Romil Singh, MD, Yuqiang Sun, MD, Vikas Bansal, MD, Linh Vu, MD, Kelly Cawcutt, MD, John M. Litell, DO, Sarah Redmond, PhD, Eleanor Fitzpatrick, RN, Kirstin J. Kooda, PharmD, Michelle Biehl, MD, Neha S. Dangayach, MD, Viren Kaul, MD, June M. Chae, MD, Aaron Leppin, MD, Mathew Siuba, MD, Rahul Kashyap, MBBS, Allan J. Walkey, MD, Alexander S. Niven, MD, on behalf of the Structured Team-based Optimal Patient-Centered Care for Virus COVID-19 (STOP-VIRUS) Collaborative, Anthony Martinez, MD, Dean Meadows, MD, Helen Stinnett, BA, RRT, Michael Allison, MD, Olubukola Adeyemi, PharmD, Terry Herbert, BSN, RN, Gerald L. Weinhouse, MD, Namrata Patil, MD, MPH, Gaspar Hacobian, PharmD, BCPS, Kamen Rangelov, MD, Jillian Parker, RRT, Michael P. Smith, PharmD, BCCCP, Rachel Smith, RN, MSN, MBA, CCRN, Eliza Deery, MD, Andrea Harper, MS, Emily Davis, RN, CCRN, Grace M. Arteaga, MD, FAAP, FCCM, Jennifer L. Fleegel, RN, CCRN, Julie M. Duncan, RN, Kevin K. Graner, RPh, Tammy J. Schultz, RRT, LRT, Abhishek Giri, MBBS, Ashley Gill, RRT, Catherine L. Mielke, MS, APRN, CNS, Devang Sanghavi, MD, MHA, Jonathan K. Clark, RRT, Julie Shimp, RN, Lisa Marshall, MSN, RN, Michael Spiros, MSN, RN, Nirmaljot Kaur, MD, Sean P. Kiley, MD, Siva Naga Yarrarapu, MBBS, Teresa Keister, RN, Gage Stroope, LRT, CRT, Jackie Stark, PharmD, BCPS, Jessica Poehler, RN, Juan Pablo, Domecq Garces, MD, Nitesh Kumar Jain, MD, MBBS, Syed Anjum Khan, MD, Thoyaja Koritala, MD, Abigail La Nou, MD, FACEP, Christina Hall, MS, RN, Cindy Christensen, MSN, RN, FNP-BC, Kirsten Holbrook, RRT, Sara Toufar, PharmD, RPh, Sarah Normand, PharmD, RPh, Amy Spitzner, RN, CCRN, Carissa Quinn, APRN, CNS, DNP, Christina Xia, PharmD, BCCCP, Holly D. Behrns, LRT, RRT, Erin Barreto, PharmD, RPh, Jennifer Elmer, APRN, CNS, DNP, Sarah Chalmers, MD, PCCM, Macy Cooper, RN, Aaron Harthan, PharmD, BCPPS, Edmundo A. Martinez, MD, Jennifer A. Bandy, RN, BSN, John Sanford, RRT-ACCS, RRT-NPS, Jackie A. Guiliani, BSRT, RRT-NPS, Megan Kupferschmid, MSN, RN, P-CCRN, Anand Pariyadath, MD, Brandy Vitielliss, BSN, RN, Daniel Temas, MD, Smith F. Heavner, MS, RN, PCCN, Amanda Frary, MSN, RN, Murtaza Akhter, MD, Rania Rahman, MD, Mary Mulrow, RN, MN, CCRP, Tracy Cooper, RN, John M. Litell, DO, FACEP, June Mee Chae, MD, Kelly Cawcutt, MD, MS, FACP, FIDSA, Kirstin J. Kooda, PharmD, RPh, Neha S. Dangayach, MD, MSCR, Matthew Siuba, DO, Aaron B. Holley, MD, Alexander A. Kon, MD, MS, Amita Avadhani, PhD, DNP, CNE, DCC, ACNP-BC, NP-C, CCRN, FAANP, FCCM, Amy L. Dzierba, PharmD, FCCP, BCCCP, FCCM, Andre C. Kalil, MD, MPH, FACP, Ashley D. DePriest, MS, RDN, CNSC, Bradley Peters, PharmD, RPh, BCSP, BCCCP, Brenda T. Pun, DNP, RN, FCCM, Courtney E. Bennett, DO, Eric Kriner, BS, RRT, Erin S. DeMartino, MD, Erin Strong, BSN, RN, CCRN, Giora Netzer, MD, Greg S. Martin, MD, MSc, FCCM, Jerry J. Zimmerman, MD, PhD, FCCM, Julia Taylor, MD, MA, HEC-C, Karen A. Korzick, MD, MA, FCCP, FACP, FCCM, Katherine Fischkoff, MD, MPA, FACS, Lewis J. Kaplan, MD, FACS, FCCM, Marlies Ostermann, MD, PhD, Mary Susan Gaeta, MD, FACP, Mary Faith Marshall, HEC-C, PhD, Nahreen Ahmed, MD, MPH, Paul Alan Nyquist, MD, MPH, Pooja A. Nawathe, MD, FAAP, CHSE-A, CHSOS, FCCM, Preeti R. John, MD, MPH, FACS, CPE, HEC-C, and Uzma Syed, DO, FIDSA
- Subjects
Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
IMPORTANCE:. Initial Society of Critical Care Medicine Discovery Viral Infection and Respiratory illness Universal Study (VIRUS) Registry analysis suggested that improvements in critical care processes offered the greatest modifiable opportunity to improve critically ill COVID-19 patient outcomes. OBJECTIVES:. The Structured Team-based Optimal Patient-Centered Care for Virus COVID-19 ICU Collaborative was created to identify and speed implementation of best evidence based COVID-19 practices. DESIGN, SETTING, AND PARTICIPANTS:. This 6-month project included volunteer interprofessional teams from VIRUS Registry sites, who received online training on the Checklist for Early Recognition and Treatment of Acute Illness and iNjury approach, a structured and systematic method for delivering evidence based critical care. Collaborators participated in weekly 1-hour videoconference sessions on high impact topics, monthly quality improvement (QI) coaching sessions, and received extensive additional resources for asynchronous learning. MAIN OUTCOMES AND MEASURES:. Outcomes included learner engagement, satisfaction, and number of QI projects initiated by participating teams. RESULTS:. Eleven of 13 initial sites participated in the Collaborative from March 2, 2021, to September 29, 2021. A total of 67 learners participated in the Collaborative, including 23 nurses, 22 physicians, 10 pharmacists, nine respiratory therapists, and three nonclinicians. Site attendance among the 11 sites in the 25 videoconference sessions ranged between 82% and 100%, with three sites providing at least one team member for 100% of sessions. The majority reported that topics matched their scope of practice (69%) and would highly recommend the program to colleagues (77%). A total of nine QI projects were initiated across three clinical domains and focused on improving adherence to established critical care practice bundles, reducing nosocomial complications, and strengthening patient- and family-centered care in the ICU. Major factors impacting successful Collaborative engagement included an engaged interprofessional team; an established culture of engagement; opportunities to benchmark performance and accelerate institutional innovation, networking, and acclaim; and ready access to data that could be leveraged for QI purposes. CONCLUSIONS AND RELEVANCE:. Use of a virtual platform to establish a learning collaborative to accelerate the identification, dissemination, and implementation of critical care best practices for COVID-19 is feasible. Our experience offers important lessons for future collaborative efforts focused on improving ICU processes of care.
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- 2023
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29. Rural Kids and Wealth
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Lisa A. Keister, James W. Moody, and Tom Wolff
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wealth inequality ,rural ,homeownership ,debt ,Social Sciences - Abstract
Wealth ownership is a critical component of economic well-being, and wealth in early adulthood provides important clues about the trajectories along which individuals move throughout their lives. Using data from the National Longitudinal Study of Adolescent Health (Add Health), we find an association between growing up rural and adult wealth that varies across the components of wealth. We also find that growing up rural has unique implications for young adult wealth ownership that differ from growing up in other geographic regions, particularly in urban areas. Our results highlight an important outcome that is conditioned by growing up rural and underscores the importance of context for understanding how families save and accumulate wealth.
- Published
- 2022
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30. Implementation of a Virtual Interprofessional ICU Learning Collaborative: Successes, Challenges, and Initial Reactions From the Structured Team-Based Optimal Patient-Centered Care for Virus COVID-19 Collaborators
- Author
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Zec, Simon, Zorko Garbajs, Nika, Dong, Yue, Gajic, Ognjen, Kordik, Christina, Harmon, Lori, Bogojevic, Marija, Singh, Romil, Sun, Yuqiang, Bansal, Vikas, Vu, Linh, Cawcutt, Kelly, Litell, John M., Redmond, Sarah, Fitzpatrick, Eleanor, Kooda, Kirstin J., Biehl, Michelle, Dangayach, Neha S., Kaul, Viren, Chae, June M., Leppin, Aaron, Siuba, Mathew, Kashyap, Rahul, Walkey, Allan J., Niven, Alexander S., Martinez, Anthony, Meadows, Dean, Stinnett, Helen, Allison, Michael, Adeyemi, Olubukola, Herbert, Terry, Weinhouse, Gerald L., Patil, Namrata, Hacobian, Gaspar, Rangelov, Kamen, Parker, Jillian, Smith, Michael P., Smith, Rachel, Deery, Eliza, Harper, Andrea, Davis, Emily, Arteaga, Grace M., Fleegel, Jennifer L., Duncan, Julie M., Graner, Kevin K., Schultz, Tammy J., Giri, Abhishek, Gill, Ashley, Mielke, Catherine L., Sanghavi, Devang, Clark, Jonathan K., Shimp, Julie, Marshall, Lisa, Spiros, Michael, Kaur, Nirmaljot, Kiley, Sean P., Yarrarapu, Siva Naga, Keister, Teresa, Stroope, Gage, Stark, Jackie, Poehler, Jessica, Pablo, Juan, Garces, Domecq, Jain, Nitesh Kumar, Khan, Syed Anjum, Koritala, Thoyaja, La Nou, Abigail, Hall, Christina, Christensen, Cindy, Holbrook, Kirsten, Toufar, Sara, Normand, Sarah, Spitzner, Amy, Quinn, Carissa, Xia, Christina, Behrns, Holly D., Barreto, Erin, Elmer, Jennifer, Chalmers, Sarah, Cooper, Macy, Harthan, Aaron, Martinez, Edmundo A., Bandy, Jennifer A., Sanford, John, Guiliani, Jackie A., Kupferschmid, Megan, Pariyadath, Anand, Vitielliss, Brandy, Temas, Daniel, Heavner, Smith F., Frary, Amanda, Akhter, Murtaza, Rahman, Rania, Mulrow, Mary, Cooper, Tracy, Litell, John M., Chae, June Mee, Cawcutt, Kelly, Kooda, Kirstin J., Biehl, Michelle, Dangayach, Neha S., Redmond, Sarah, Kaul, Viren, Siuba, Matthew, Holley, Aaron B., Kon, Alexander A., Avadhani, Amita, Dzierba, Amy L., Kalil, Andre C., Cawcutt, Kelly, DePriest, Ashley D., Peters, Bradley, Pun, Brenda T., Bennett, Courtney E., Kriner, Eric, DeMartino, Erin S., Strong, Erin, Netzer, Giora, Martin, Greg S., Zimmerman, Jerry J., Taylor, Julia, Korzick, Karen A., Fischkoff, Katherine, Kaplan, Lewis J., Ostermann, Marlies, Gaeta, Mary Susan, Marshall, Mary Faith, Ahmed, Nahreen, Nyquist, Paul Alan, Nawathe, Pooja A., John, Preeti R., and Syed, Uzma
- Published
- 2023
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31. Impact of COVID-19 on patient and healthcare professional attitudes, beliefs, and behaviors toward the healthcare system and on the dynamics of the healthcare pathway
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Katarzyna Bernacki, Angie Keister, Nadia Sapiro, Jin Su Joo, and Lisa Mattle
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Attitudes ,Behaviors ,Beliefs ,COVID-19 ,Healthcare pathway ,Patient feedback ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background COVID-19 has dramatically changed how healthcare is delivered and experienced. Methods One-on-one interviews and a virtual ethnographic roundtable were conducted among 45 patients, caregivers, and healthcare professionals (HCPs) in 4 therapeutic areas from the United States and Japan: overactive bladder, vasomotor symptoms, prostate cancer, and metastatic urothelial carcinoma. The goal was to identify the impact of COVID-19 on patient/caregiver and HCP attitudes, interactions, beliefs, and behaviors toward the healthcare system and care pathway. Results Four foundational themes were identified: 1) COVID-19 risk is relative; 2) isolation is collateral damage; 3) telehealth is a parallel universe; and 4) COVID-19 is destabilizing the foundations of healthcare. Numerous insights, influenced by diverse cultural, social, and psychological factors, were identified within each theme. Conclusions The impacts of COVID-19 were noticeable at multiple points of care during the “universal” care pathway, including at initial screening, referral to specialists, diagnosis, treatment initiation/surgery, and during ongoing care. Greater appreciation of the short- and long-term impacts of COVID-19 and resulting gaps in care may act as a catalyst for positive change in future patient care.
- Published
- 2021
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32. Unexpected food web responses to low dissolved oxygen in an estuarine fjord
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Moriarty, Pamela E., Essington, Timothy E., Horne, John K., Keister, Julie E., Li, Lingbo, Parker-Stetter, Sandra L., and Sato, Mei
- Published
- 2020
33. Provider Bias in prescribing opioid analgesics: a study of electronic medical Records at a Hospital Emergency Department
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Lisa A. Keister, Chad Stecher, Brian Aronson, William McConnell, Joshua Hustedt, and James W. Moody
- Subjects
Opioids ,Prescription bias ,Emergency departments ,Electronic medical records ,Undertreatment ,Crowding ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Physicians do not prescribe opioid analgesics for pain treatment equally across groups, and such disparities may pose significant public health concerns. Although research suggests that institutional constraints and cultural stereotypes influence doctors’ treatment of pain, prior quantitative evidence is mixed. The objective of this secondary analysis is therefore to clarify which institutional constraints and patient demographics bias provider prescribing of opioid analgesics. Methods We used electronic medical record data from an emergency department of a large U.S hospital during years 2008–2014. We ran multi-level logistic regression models to estimate factors associated with providing an opioid prescription during a given visit while controlling for ICD-9 diagnosis codes and between-patient heterogeneity. Results A total of 180,829 patient visits for 63,513 unique patients were recorded during the period of analysis. Overall, providers were significantly less likely to prescribe opioids to the same individual patient when the visit occurred during higher rates of emergency department crowding, later times of day, earlier in the week, later years in our sample, and when the patient had received fewer previous opioid prescriptions. Across all patients, providers were significantly more likely to prescribe opioids to patients who were middle-aged, white, and married. We found no bias towards women and no interaction effects between race and crowding or between race and sex. Conclusions Providers tend to prescribe fewer opioids during constrained diagnostic situations and undertreat pain for patients from high-risk and marginalized demographic groups. Potential harms resulting from previous treatment decisions may accumulate by informing future treatment decisions.
- Published
- 2021
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34. Household Wealth and Child Body Mass Index: Patterns and Mechanisms
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Courtney Boen, Lisa A. Keister, and Nick Graetz
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wealth ,child health ,health disparities ,Social Sciences - Abstract
Wealth plays a unique role in shaping later-life health risk, but the relationship between wealth and child health remains largely unexplored. Using longitudinal data from the Panel Study of Income Dynamics (PSID) (1994–2013), this study uses multilevel mixed-effects models and the parametric g-formula approach to both assess the relationship between household wealth and child body mass index (BMI) and identify the mechanisms linking wealth to child BMI. We find that household wealth is negatively associated with childhood BMI. In addition to finding a strong, direct association, we also find that household wealth indirectly patterns child BMI and obesity risk through household spending and family stress processes. These findings provide new insights into the links between wealth, child health, and early-life population health disparities.
- Published
- 2021
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35. ENSO impacts on ecosystem indicators in the California Current System
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OHMAN, Mark D, Mantua, Nate, Keister, Julie, Garcia-Reyes, Marisol, and McClatchie, Sam
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ENSO ,El Nino ,California Current System ,Harmful Algal Blooms ,Phytoplankton ,Zooplankton ,euphausiids ,krill ,sardine ,anchovy - Abstract
El Niño-Southern Oscillation (ENSO) events activate long-distance teleconnections through theatmosphere and ocean that can dramatically impact marine ecosystems along the West Coast of NorthAmerica, affecting diverse organisms ranging from plankton to exploitable and protected species. Such ENSOrelatedchanges to marine ecosystems can ultimately affect humans in many ways, including via depressedplankton and fish production, dramatic range shifts for many protected and exploited species, inaccessibility oftraditionally fished resources, more prevalent harmful algal blooms, altered oxygen and pH of waters usedin mariculture, and proliferation of pathogens. The principal objective of the Forecasting ENSO Impacts onMarine Ecosystems of the US West Coast workshop was to develop a scientific framework for building an ENSOrelatedforecast system of ecosystem indicators along the West Coast of North America, including major biologicaland biogeochemical responses. Attendees realized that a quantitative, biologically-focused forecast system is amuch more challenging objective than forecasting the physical system alone; it requires an understanding ofthe ocean-atmospheric physical system and of diverse organism-level, population-level, and geochemicalresponses that, in aggregate, lead to altered ecosystem states.
- Published
- 2017
36. Projections of algae, eelgrass, and zooplankton ecological interactions in the inner Salish Sea – for future climate, and altered oceanic states
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Khangaonkar, Tarang, Nugraha, Adi, Premathilake, Lakshitha, Keister, Julie, and Borde, Amy
- Published
- 2021
- Full Text
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37. Net Worth Poverty and Child Development
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Christina Gibson-Davis, Lisa A. Keister, Lisa A. Gennetian, and Warren Lowell
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Social Sciences ,Sociology (General) ,HM401-1281 - Abstract
The authors investigate whether net worth poverty (NWP) reduces children’s well-being. NWP—having wealth (assets minus debts) less than one fourth of the federal poverty line—is both theoretically and empirically distinct from income poverty (IP) and is the modal form of poverty among children. Data come from the Panel Study of Income Dynamics and its Child Development Supplement on children ages 3 to 17 years observed between 2002 and 2019. The authors use linear mixed-effects models to investigate the associations among NWP, IP, and four cognitive and behavioral outcomes. NWP reduces children’s cognitive scores and was associated with increases in both problem behavior scores. Negative associations for NWP are similar in magnitude to those found for IP. Much of the NWP effect operates through asset deprivation rather than high debt. The results illustrate the potential risks many children, previously overlooked in studies of IP, face because of wealth deprivation.
- Published
- 2022
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38. Cellular dormancy in minimal residual disease following targeted therapy
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Jason R. Ruth, Dhruv K. Pant, Tien-chi Pan, Hans E. Seidel, Sanjeethan C. Baksh, Blaine A. Keister, Rita Singh, Christopher J. Sterner, Suzanne J. Bakewell, Susan E. Moody, George K. Belka, and Lewis A. Chodosh
- Subjects
Quiescence ,Dormancy ,Residual disease ,Recurrence ,Gene expression ,Breast cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Breast cancer mortality is principally due to tumor recurrence, which can occur following extended periods of clinical remission that may last decades. While clinical latency has been postulated to reflect the ability of residual tumor cells to persist in a dormant state, this hypothesis remains unproven since little is known about the biology of these cells. Consequently, defining the properties of residual tumor cells is an essential goal with important clinical implications for preventing recurrence and improving cancer outcomes. Methods To identify conserved features of residual tumor cells, we modeled minimal residual disease using inducible transgenic mouse models for HER2/neu and Wnt1-driven tumorigenesis that recapitulate cardinal features of human breast cancer progression, as well as human breast cancer cell xenografts subjected to targeted therapy. Fluorescence-activated cell sorting was used to isolate tumor cells from primary tumors, residual lesions following oncogene blockade, and recurrent tumors to analyze gene expression signatures and evaluate tumor-initiating cell properties. Results We demonstrate that residual tumor cells surviving oncogenic pathway inhibition at both local and distant sites exist in a state of cellular dormancy, despite adequate vascularization and the absence of adaptive immunity, and retain the ability to re-enter the cell cycle and give rise to recurrent tumors after extended latency periods. Compared to primary or recurrent tumor cells, dormant residual tumor cells possess unique features that are conserved across mouse models for human breast cancer driven by different oncogenes, and express a gene signature that is strongly associated with recurrence-free survival in breast cancer patients and similar to that of tumor cells in which dormancy is induced by the microenvironment. Although residual tumor cells in both the HER2/neu and Wnt1 models are enriched for phenotypic features associated with tumor-initiating cells, limiting dilution experiments revealed that residual tumor cells are not enriched for cells capable of giving rise to primary tumors, but are enriched for cells capable of giving rise to recurrent tumors, suggesting that tumor-initiating populations underlying primary tumorigenesis may be distinct from those that give rise to recurrence following therapy. Conclusions Residual cancer cells surviving targeted therapy reside in a well-vascularized, desmoplastic microenvironment at both local and distant sites. These cells exist in a state of cellular dormancy that bears little resemblance to primary or recurrent tumor cells, but shares similarities with cells in which dormancy is induced by microenvironmental cues. Our observations suggest that dormancy may be a conserved response to targeted therapy independent of the oncogenic pathway inhibited or properties of the primary tumor, that the mechanisms underlying dormancy at local and distant sites may be related, and that the dormant state represents a potential therapeutic target for preventing cancer recurrence.
- Published
- 2021
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39. In situ observations of zooplankton show changes in abundance and swimming speed in response to hypoxia and acidification.
- Author
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Wyeth, Amy C., Grünbaum, Daniel, Keister, Julie E., Crouser, Deana, and Roberts, Paul
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BEHAVIOR modification ,AVOIDANCE conditioning ,STARTLE reaction ,COASTAL changes ,BEHAVIORAL assessment ,PREDATION - Abstract
Zooplankton exhibit diverse swimming behaviors to reposition themselves in the water column, feed, find mates, and avoid predation. Environmental stressors that modify behavior can have cascading effects on population distributions and predator–prey interactions. Understanding zooplankton population dynamics is challenging, largely because traditional methods for quantifying zooplankton distributions are costly, limited in scope, and require extended analysis by trained analysts. We developed a novel methodology that combined remotely deployed camera systems, machine learning‐based identification of zooplankton, and video‐based tracking technology to quantify copepod and amphipod in situ swimming behavior in Hood Canal, WA, USA, a seasonally hypoxic and acidified fjord. Behavioral analysis showed copepods of all sizes swam on average 24% slower in stressful (hypoxic and acidified) waters relative to non‐stressful waters. Copepods exhibited less frequent escape responses in stressful waters, with a 68% decrease in the amount of time spent "jumping" for copepods 1–2 mm in length. Interestingly, abundances of small copepods increased in stressful waters, with 56% more 1–2 mm long copepods in stressful vs. non‐stressful conditions. In contrast, amphipods' average "darting" speeds did not differ between environmental conditions, but the abundance of amphipods significantly decreased in stressful waters relative to non‐stressful waters, suggesting avoidance of stressful conditions. Changes in swimming behavior are informative metrics in understanding ecosystem impacts of environmental stress because swimming speed has individual, population, and community‐level implications. Our results suggest that, among copepods, in situ behaviors may be useful proxies in monitoring the impacts of climate change on coastal ecosystems. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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40. Subsidence Rates Associated With Porous 3D-Printed Versus Solid Titanium Cages in Transforaminal Lumbar Interbody Fusion.
- Author
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Toop, Nathaniel, Dhaliwal, Joravar, Grossbach, Andrew, Gibbs, David, Reddy, Nihaal, Keister, Alexander, Mallory, Noah, Xu, David, and Viljoen, Stephanus
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PATIENT reported outcome measures ,BODY mass index ,SPINAL fusion ,LAND subsidence ,MULTIVARIATE analysis - Abstract
Study Design: Retrospective Cohort Study. Objective: To determine whether 3D-printed porous titanium (3DPT) interbody cages offer any clinical or radiographic advantage over standard solid titanium (ST) interbody cages in transforaminal lumbar interbody fusions (TLIF). Methods: A consecutive series of adult patients undergoing one- or two-level TLIF with either 3DPT or ST "banana" cages were analyzed for patient reported outcome measures (PROMs), radiographic complications, and clinical complications. Exclusion criteria included clinical or radiographic follow-up less than 1 year. Results: The final cohort included 90 ST interbody levels from 74 patients, and 73 3DPT interbody levels from 50 patients for a total of 124 patients. Baseline demographic variables and comorbidity rates were similar between groups (P >.05). Subsidence of any grade occurred more frequently in the ST group compared with the 3DPT group (24.4% vs 5.5%, respectively, P =.001). Further, the ST group was more likely to have higher grades of subsidence than the 3DPT group (P =.009). All PROMs improved similarly after surgery and revision rates did not differ between groups (both P >.05). On multivariate analysis, significant positive correlators with increasing subsidence grade included greater age (P =.015), greater body mass index (P =.043), osteoporosis/osteopenia (P <.027), and ST cage type (P =.019). Conclusions: When considering interbody material for TLIF, both ST and 3DPT cages performed well; however, 3DPT cages were associated with lower rates of subsidence. The clinical relevance of these findings deserves further randomized, prospective investigation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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41. Preliminary photographs and improved positives: discovering the New York Public Library’s Arctic Exploration album
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Elena Basso, Federica Pozzi, Jessica Keister, and Elizabeth Cronin
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Expeditionary photography ,Photographs ,Arctic expeditions ,Late 19th and early 20th centuries ,Silver‐gelatin paper ,Silver halides ,Fine Arts ,Analytical chemistry ,QD71-142 - Abstract
Abstract In the late 19th and early 20th centuries, original photographs were sent to publishers so that they could be reproduced in print. The photographs often needed to be reworked with overpainting and masking, and such modifications were especially necessary for low-contrast photographs to be reproduced as a letterpress halftone. As altered objects, many of these marked-up photographs were simply discarded after use. An album at The New York Public Library, however, contains 157 such photographs, all relating to the Jackson–Harmsworth expedition to Franz Josef Land, from 1894 to 1897. Received as gifts from publishers, the photographs are heavily retouched with overpainting and masking, as well as drawn and collaged elements. The intense level of overpainting on many of the photographs, but not on others, raised questions about their production and alteration. Jackson’s accounts attested to his practice of developing and printing photographs on site, testing different materials and techniques—including platino-bromide and silver-gelatin papers—to overcome the harsh environmental conditions. In this context, sixteen photographs from the album were analyzed through a combination of non-invasive and micro-invasive techniques, including X-ray fluorescence (XRF) spectroscopy, fiber optics reflectance spectroscopy (FORS), Raman and Fourier-transform infrared (FTIR) spectroscopies, and scanning electron microscopy with energy-dispersive X-ray spectroscopy (SEM/EDS). This analytical campaign aimed to evaluate the possible residual presence of silver halides in any of the preliminary and improved photographs. The detection of these compounds would be one of several factors supporting a hypothesis that some of the photographs in the album were indeed printed on site, in the Arctic, and, as a result, may have been impacted by the extreme environment. Additional goals of the study included the evaluation of the extent of retouching, providing a full characterization of the pigments and dyes used in overpainted prints, and comparing the results with contemporaneous photographic publications that indicate which coloring materials were available at the time. Further analyses shed light on the organic components present in the binders and photographic emulsions. This research has increased our knowledge of photographic processes undertaken in a hostile environment such as the Arctic, and shed light on the technical aspects of photographically illustrating books during the late 19th and early 20th centuries.
- Published
- 2021
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42. Ageing of routine jobs in Europe
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Lewandowski, Piotr, Keister, Roma, Hardy, Wojciech, and Górka, Szymon
- Published
- 2020
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43. Review: Preclinical Models of Large‐Vessel Occlusion Stroke
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Keister, Alexander, primary, Carfora, Arianna, additional, Patel, Mayur S., additional, Zakeri, Amanda S., additional, Mannix, Lillian, additional, Wheeler, Debra G., additional, Herson, Paco S., additional, and Nimjee, Shahid M., additional
- Published
- 2024
- Full Text
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44. Numerical and Physical Stability of Supernova Neutrino Flavor Evolution
- Author
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Keister, B. D.
- Subjects
Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics ,Nuclear Theory - Abstract
This paper examines neutrino flavor evolution outside a supernova neutrinosphere using a one-dimensional model that retains the non-linear nature of neutrino-neutrino interactions as well as some aspects of the full geometry. In some limiting cases analytic results can be obtained that display different behavior from their counterparts in (linear) solar neutrino flavor evolution. For more general cases, numerical solutions require extended numerical algorithms to achieve stable solutions, and these solutions exhibit standard chaotic behavior., Comment: Title and text revisions, conclusions unchanged
- Published
- 2014
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45. High School Employment and Academic Achievement: A Note for Educators
- Author
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Keister, Mary and Hall, Joshua
- Abstract
Educators are often in a position to affect student decisions to work during the school term. This study reviews and summarizes the literature on the effect that employment during high school has on academic achievement. The available evidence suggests that part-time jobs for high school students are beneficial as long as the number of hours worked per week stays under 20.
- Published
- 2010
46. Observation and control of shock waves in individual nanoplasmas
- Author
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Hickstein, Daniel D., Dollar, Franklin, Gaffney, Jim A., Foord, Mark E., Petrov, George M., Palm, Brett B., Keister, K. Ellen, Ellis, Jennifer L., Ding, Chengyuan, Libby, Stephen B., Jimenez, Jose L., Kapteyn, Henry C., Murnane, Margaret M., and Xiong, Wei
- Subjects
Physics - Plasma Physics ,Physics - Atomic and Molecular Clusters - Abstract
In a novel experiment that images the momentum distribution of individual, isolated 100-nm-scale plasmas, we make the first experimental observation of shock waves in nanoplasmas. We demonstrate that the introduction of a heating pulse prior to the main laser pulse increases the intensity of the shock wave, producing a strong burst of quasi-monochromatic ions with an energy spread of less than 15%. Numerical hydrodynamic calculations confirm the appearance of accelerating shock waves, and provide a mechanism for the generation and control of these shock waves. This observation of distinct shock waves in dense plasmas enables the control, study, and exploitation of nanoscale shock phenomena with tabletop-scale lasers., Comment: 8 pages of manuscript, 9 pages of supplemental information, total 17 pages
- Published
- 2013
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47. Propagation of the 2014–2016 Northeast Pacific Marine Heatwave Through the Salish Sea
- Author
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Tarang Khangaonkar, Adi Nugraha, Su Kyong Yun, Lakshitha Premathilake, Julie E. Keister, and Julia Bos
- Subjects
marine heatwave ,Salish Sea ,water quality impacts ,temperature anomaly (blob) ,biogeochemical response ,primary production ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Effects and impacts of the Northeast Pacific marine heatwave of 2014–2016 on the inner coastal estuarine waters of the Salish Sea were examined using a combination of monitoring data and an established three-dimensional hydrodynamic and biogeochemical model of the region. The anomalous high temperatures reached the U.S. Pacific Northwest continental shelf toward the end of 2014 and primarily entered the Salish Sea waters through an existing strong estuarine exchange. Elevated temperatures up to + 2.3°C were observed at the monitoring stations throughout 2015 and 2016 relative to 2013 before dissipating in 2017. The hydrodynamic and biogeochemical responses to this circulating high-temperature event were examined using the Salish Sea Model over a 5-year window from 2013 to 2017. Responses of conventional water-quality indicator variables, such as temperature and salinity, nutrients and phytoplankton, zooplankton, dissolved oxygen, and pH, were evaluated relative to a baseline without the marine heatwave forcing. The simulation results relative to 2014 show an increase in biological activity (+14%, and 6% Δ phytoplankton biomass, respectively) during the peak heatwave year 2015 and 2016 propagating toward higher zooplankton biomass (+14%, +18% Δ mesozooplankton biomass). However, sensitivity tests show that this increase was a direct result of higher freshwater and associated nutrient loads accompanied by stronger estuarine exchange with the Pacific Ocean rather than warming due to the heatwave. Strong vertical circulation and mixing provided mitigation with only ≈+0.6°C domain-wide annual average temperature increase within Salish Sea, and served as a physical buffer to keep waters cooler relative to the continental shelf during the marine heatwave.
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- 2021
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48. Community Effectiveness of Masks and Vaccines
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James W. Moody, Lisa A. Keister, and Dana K. Pasquale
- Subjects
Social Sciences ,Sociology (General) ,HM401-1281 - Abstract
Recent controversies about wearing masks and getting vaccinated to slow the spread of coronavirus disease 2019 highlight the potential for individual rights and decision making to create widespread community-level outcomes. There is little work demonstrating the collective spillover effects of pandemic mitigation efforts. The authors contribute by visualizing the proportion of unvaccinated people who would become infected at different combinations of mask wearing and vaccination in a hypothetical community. A common pattern emerges across all assumptions: below some joint threshold of mask and vaccination rates, almost all unvaccinated people will eventually become infected, and beyond that threshold there is a steep drop leading to widespread community-level protection. What differs across settings is the timing and shape of the drop-off after crossing the threshold. The authors conclude that masking and vaccination are sensible and in the best interest of the population.
- Published
- 2021
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49. Cellular dormancy in minimal residual disease following targeted therapy
- Author
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Ruth, Jason R., Pant, Dhruv K., Pan, Tien-chi, Seidel, Hans E., Baksh, Sanjeethan C., Keister, Blaine A., Singh, Rita, Sterner, Christopher J., Bakewell, Suzanne J., Moody, Susan E., Belka, George K., and Chodosh, Lewis A.
- Published
- 2021
- Full Text
- View/download PDF
50. Preliminary photographs and improved positives: discovering the New York Public Library’s Arctic Exploration album
- Author
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Basso, Elena, Pozzi, Federica, Keister, Jessica, and Cronin, Elizabeth
- Published
- 2021
- Full Text
- View/download PDF
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