8 results on '"Mizeracka, Karolina"'
Search Results
2. Lineage-specific control of convergent differentiation by a Forkhead repressor
- Author
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Mizeracka, Karolina, primary, Rogers, Julia M., additional, Rumley, Jonathan D., additional, Shaham, Shai, additional, Bulyk, Martha L., additional, Murray, John I., additional, and Heiman, Maxwell G., additional
- Published
- 2021
- Full Text
- View/download PDF
3. Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen
- Author
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Bienvenu, Frederic, Jirawatnotai, Siwanon, Elias, Joshua E., Meyer, Clifford A., Mizeracka, Karolina, Marson, Alexander, Frampton, Garrett M., Cole, Megan F., Odom, Duncan T., Odajima, Junko, Geng, Yan, Zagozdzon, Agnieszka, Jecrois, Marie, Young, Richard A., Liu, X. Shirley, Cepko, Constance L., Gygi, Steven P., and Sicinski, Piotr
- Subjects
Physiological aspects ,Research ,Cell cycle -- Research ,Cyclin D -- Physiological aspects -- Research ,Transcription (Genetics) -- Research ,Cyclin D proteins -- Physiological aspects -- Research ,Genetic transcription -- Research - Abstract
To study the molecular functions of cyclin D1 during development and in cancer formation, we generated knock-in mouse strains in which tandem (Flag and haemagglutinin (HA)) tags were inserted into [...], Cyclin D1 belongs to the core cell cycle machinery, and it is frequently overexpressed in human cancers (1,2). The full repertoire of cyclin D1 functions in normal development and oncogenesis is unclear at present. Here we developed Flag- and haemagglutinin-tagged cyclin D1 knock-in mouse strains that allowed a high-throughput mass spectrometry approach to search for cyclin D1-binding proteins in different mouse organs. In addition to cell cycle partners, we observed several proteins involved in transcription. Genome-wide location analyses (chromatin immunoprecipitation coupled to DNA microarray; ChIP-chip) showed that during mouse development cyclin D1 occupies promoters of abundantly expressed genes. In particular, we found that in developing mouse retinas--an organ that critically requires cyclin D1 function (3,4)--cyclin D1 binds the upstream regulatory region of the Notch1 gene, where it serves to recruit CREB binding protein (CBP) histone acetyltransferase. Genetic ablation of cyclin D1 resulted in decreased CBP recruitment, decreased histone acetylation of the Notch1 promoter region, and led to decreased levels of the Notch1 transcript and protein in cyclin D1-null ([Ccnd1.sup.-/-]) retinas. Transduction of an activated allele of Notch1 into [Ccnd1.sup.-/-] retinas increased proliferation of retinal progenitor cells, indicating that upregulation of Notch1 signalling alleviates the phenotype of cyclin D1-deficiency. These studies show that in addition to its well-established cell cycle roles, cyclin D1 has an in vivo transcriptional function in mouse development. Our approach, which we term 'genetic-proteomic', can be used to study the in vivo function of essentially any protein.
- Published
- 2010
- Full Text
- View/download PDF
4. Lineage-specific control of convergent cell identity by a Forkhead repressor
- Author
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Mizeracka, Karolina, Rogers, Julia M., Shaham, Shai, Bulyk, Martha L., and Heiman, Maxwell G.
- Subjects
nervous system ,fungi - Abstract
A central goal in developmental biology is to decipher the molecular events that govern cell fate specification in each developmental lineage. Here, we show that the C. elegans Forkhead transcription factor UNC-130 specifies two glial types that arise from one lineage, but does not affect equivalent glia that are produced in different anatomical regions from other lineages. We show that glial defects correlate with UNC-130:DNA binding, and that UNC-130 acts as a transcriptional repressor via two independent domains. UNC-130 can be functionally replaced by its human homolog, the neural crest lineage determinant FoxD3, and other neural crest factors (UNC-86/Brn3 and RNT-1/Runx) act in the same pathway. We propose that, in contrast to “terminal selectors”, UNC-130 acts as a "lineage selector" to enable molecularly distinct progenitor cells to generate regionally equivalent cell types. This novel mechanism may underlie the recent observation of convergent lineages as a prevalent feature of vertebrate development.
- Published
- 2019
- Full Text
- View/download PDF
5. Transcriptional role of cyclin D1 in development revealed by a “genetic-proteomic” screen
- Author
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Massachusetts Institute of Technology. Department of Biology, Young, Richard A., Bienvenu, Frederic, Jirawatnotai, Siwanon, Elias, Joshua E., Meyer, Clifford A., Mizeracka, Karolina, Marson, Alexander, Frampton, Garrett M., Cole, Megan F., Odom, Duncan, Odajima, Junko, Geng, Yan, Zagozdzon, Agnieszka, Jecrois, Marie, Liu, X. Shirley, Cepko, Constance L., Gygi, Steven P., Sicinski, Piotr, Massachusetts Institute of Technology. Department of Biology, Young, Richard A., Bienvenu, Frederic, Jirawatnotai, Siwanon, Elias, Joshua E., Meyer, Clifford A., Mizeracka, Karolina, Marson, Alexander, Frampton, Garrett M., Cole, Megan F., Odom, Duncan, Odajima, Junko, Geng, Yan, Zagozdzon, Agnieszka, Jecrois, Marie, Liu, X. Shirley, Cepko, Constance L., Gygi, Steven P., and Sicinski, Piotr
- Abstract
Author manuscript: 2010 September 22., Cyclin D1 belongs to the core cell cycle machinery, and it is frequently overexpressed in human cancers[superscript 1, 2]. The full repertoire of cyclin D1 functions in normal development and oncogenesis is unclear at present. Here we developed Flag- and haemagglutinin-tagged cyclin D1 knock-in mouse strains that allowed a high-throughput mass spectrometry approach to search for cyclin D1-binding proteins in different mouse organs. In addition to cell cycle partners, we observed several proteins involved in transcription. Genome-wide location analyses (chromatin immunoprecipitation coupled to DNA microarray; ChIP-chip) showed that during mouse development cyclin D1 occupies promoters of abundantly expressed genes. In particular, we found that in developing mouse retinas—an organ that critically requires cyclin D1 function[superscript 3, 4]—cyclin D1 binds the upstream regulatory region of the Notch1 gene, where it serves to recruit CREB binding protein (CBP) histone acetyltransferase. Genetic ablation of cyclin D1 resulted in decreased CBP recruitment, decreased histone acetylation of the Notch1 promoter region, and led to decreased levels of the Notch1 transcript and protein in cyclin D1-null (Ccnd1-/-) retinas. Transduction of an activated allele of Notch1 into Ccnd1-/- retinas increased proliferation of retinal progenitor cells, indicating that upregulation of Notch1 signalling alleviates the phenotype of cyclin D1-deficiency. These studies show that in addition to its well-established cell cycle roles, cyclin D1 has an in vivo transcriptional function in mouse development. Our approach, which we term ‘genetic–proteomic’, can be used to study the in vivo function of essentially any protein.
- Published
- 2012
6. Notch1 is required in newly postmitotic cells to inhibit the rod photoreceptor fate
- Author
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Mizeracka, Karolina, primary, DeMaso, Christina R., additional, and Cepko, Constance L., additional
- Published
- 2013
- Full Text
- View/download PDF
7. 21-P008 Role of Notch signaling in retinal development
- Author
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Mizeracka, Karolina, primary and Cepko, Connie, additional
- Published
- 2009
- Full Text
- View/download PDF
8. Functional Analysis of Notch Signaling during Vertebrate Retinal Development
- Author
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Mizeracka, Karolina and Cepko, Connie
- Subjects
progenitor cells ,retina ,neurosciences ,developmental biology ,notch signaling - Abstract
The process of cell fate determination, which establishes the vastly diverse set of neural cell types found in the central nervous system, remains poorly understood. During retinal development, multipotent retinal progenitor cells generate seven major cell types, including photoreceptors, interneurons, and glia, in an ordered temporal sequence. The behavior of these progenitor cells is influenced by the Notch pathway, a widely utilized signal during embryogenesis which can regulate proliferation and cell fate decisions. To examine the underlying genetic changes that occur when Notch1 is removed from individual retinal cells, microarray analysis of single cells from wild type or Notch1 conditional knockout retinas was performed. Notch1 deficient cells downregulated progenitor and cell cycle marker genes, while robustly upregulating genes associated with rod genesis. Single wild type cells expressed markers of both rod photoreceptors and interneurons, suggesting that these cells were in a transitional state. In order to examine the role of Notch signaling in cell fate specification separate from its role in proliferation, Notch1 was genetically removed specifically from newly postmitotic cells. Notch1 deficient cells preferentially became cone photoreceptors at embryonic stages, and rod photoreceptors at postnatal stages. In both cases, this cell fate change occurred at the expense of the other cell types normally produced at that time. In addition, single cell profiling revealed that Inhibitor of differentiation 1 and 3 genes were robustly downregulated in Notch1 deficient cells. Ectopic expression of these genes during postnatal development in wild type retinas was sufficient to drive production of progenitor/Müller glial cells. Moreover, Id1 and 3 partially rescued the production of Müller glial cells and bipolar cells in the absence of Notch1, even in newly postmitotic cells. We propose that after cell cycle exit, retinal precursor cells transition through a period in which they express marker genes of several different cell types as they commit to a fate, likely endowed by their progenitor cell. Specifically, cells that will become bipolars or Müller glia depend on Id-mediated Notch signaling during this transitional state to take on their respective fates.
- Published
- 2013
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