1. FORCETRACKER: A versatile tool for standardized assessment of tissue contractile properties in 3D Heart-on-Chip platforms.
- Author
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Rivera-Arbeláez JM, Dostanić M, Windt LM, Stein JM, Cofiño-Fabres C, Boonen T, Wiendels M, van den Berg A, Segerink LI, Mummery CL, Sarro PM, van Meer BJ, Ribeiro MC, Mastrangeli M, and Passier R
- Subjects
- Humans, Tissue Engineering methods, Myocytes, Cardiac physiology, Lab-On-A-Chip Devices, Heart physiology, Myocardial Contraction physiology, Software, Algorithms
- Abstract
Engineered heart tissues (EHTs) have shown great potential in recapitulating tissue organization, functions, and cell-cell interactions of the human heart in vitro. Currently, multiple EHT platforms are used by both industry and academia for different applications, such as drug discovery, disease modelling, and fundamental research. The tissues' contractile force, one of the main hallmarks of tissue function and maturation level of cardiomyocytes, can be read out from EHT platforms by optically tracking the movement of elastic pillars induced by the contractile tissues. However, existing optical tracking algorithms which focus on calculating the contractile force are customized and platform-specific, often not available to the broad research community, and thus hamper head-to-head comparison of the model output. Therefore, there is the need for robust, standardized and platform-independent software for tissues' force assessment. To meet this need, we developed ForceTracker: a standalone and computationally efficient software for analyzing contractile properties of tissues in different EHT platforms. The software uses a shape-detection algorithm to single out and track the movement of pillars' tips for the most common shapes of EHT platforms. In this way, we can obtain information about tissues' contractile performance. ForceTracker is coded in Python and uses a multi-threading approach for time-efficient analysis of large data sets in multiple formats. The software efficiency to analyze circular and rectangular pillar shapes is successfully tested by analyzing different format videos from two EHT platforms, developed by different research groups. We demonstrate robust and reproducible performance of the software in the analysis of tissues over time and in various conditions. ForceTracker's detection and tracking shows low sensitivity to common incidental defects, such as alteration of tissue shape or air bubbles. Detection accuracy is determined via comparison with manual measurements using the software ImageJ. We developed ForceTracker as a tool for standardized analysis of contractile performance in EHT platforms to facilitate research on disease modeling and drug discovery in academia and industry., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: R.P. is a co-founder of Pluriomics (Ncardia) and River BioMed-ics BV. M.C.R. is a co-founder of River BioMedics BV. A.v.d.B. is a scientific advisor of River BioMedics BV. C.L.M. is co-founder of Pluriomics (Ncardia). The other authors report no conflicts., (Copyright: © 2025 Rivera-Arbeláez et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2025
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