25 results on '"Ondrej Sedlacek"'
Search Results
2. Geographic trends in range sizes explain patterns in bird responses to urbanization in Europe
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Michal Ferenc, Ondrej Sedlacek, Roman Fuchs, Maurizio Fraissinet, and David Storch
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towns and cities ,environmental filtering ,homogenization ,latitutidinal gradient ,Rapoport's rule ,rarity ,Ecology ,QH540-549.5 - Abstract
The probability of occurrence of bird species in towns/cities increases with their range sizes, and Rapoport’s rule states that range sizes increase with latitude. To test the hypothesis that the increasing number of bird species persisting in cities at higher latitudes of Europe is linked to their larger range sizes, we compiled data on bird communities of: a) 41 urban bird atlases; b) 37 city core zones from published sources; c) regions of nine grid cells of the EBCC Atlas of European Breeding Birds around each city. We tested whether the proportion of species from particular regional bird assemblages entering cities (i.e., proportional richness) was related to the geographical position, mean range size of regional avifaunas, proportion of vegetated areas and city habitat heterogeneity. The mean range sizes of the observed and randomly selected urban avifaunas were contrasted. The proportional richness of urban avifaunas was positively related to the geographic position and mean range size of birds in regional assemblages. The evidence favoured range sizes if considering the European range sizes or latitudinal extents, but was limited for global range sizes. Randomizations tended to show larger range sizes for the real avifaunas than in the randomly selected ones. For urban core zones, the results were less clear-cut with some evidence only in favour of the European range sizes. No role of vegetation or habitat heterogeneity was found. In conclusion, while vegetation availability or heterogeneity did not show any effects, spatial position and range sizes of birds in regional assemblages seemed to influence the proportional richness of cities and their core zones. Factors correlated with spatial position (e.g., climate) might increase the attractivity of particular cities to birds. However, the effects of range sizes indicated that urbanization possibly has more negative impacts on the avifauna in the regions occupied by less widespread species.
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- 2019
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3. Linear Poly(ethylenimine-propylenimine) Random Copolymers for Gene Delivery: From Polymer Synthesis to Efficient Transfection with High Serum Tolerance
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M. Rachèl Elzes, Ine Mertens, Ondrej Sedlacek, Bart Verbraeken, Aniek C. A. Doensen, Maarten A. Mees, Mathias Glassner, Somdeb Jana, Jos M. J. Paulusse, Richard Hoogenboom, MESA+ Institute, and Biomolecular Nanotechnology
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Polymers and Plastics ,Polymers ,Aziridines ,Gene Transfer Techniques ,Bioengineering ,DNA ,Transfection ,Biomaterials ,Mice ,2023 OA procedure ,Materials Chemistry ,Animals ,Polyethyleneimine ,Plasmids - Abstract
Naturally occurring oligoamines, such as spermine, spermidine, and putrescine, are well-known regulators of gene expression. These oligoamines frequently have short alkyl spacers with varying lengths between the amines. Linear polyethylenimine (PEI) is a polyamine that has been widely applied as a gene vector, with various formulations currently in clinical trials. In order to emulate natural oligoamine gene regulators, linear random copolymers containing both PEI and polypropylenimine (PPI) repeat units were designed as novel gene delivery agents. In general, statistical copolymerization of 2-oxazolines and 2-oxazines leads to the formation of gradient copolymers. In this study, however, we describe for the first time the synthesis of near-ideal random 2-oxazoline/2-oxazine copolymers through careful tuning of the monomer structures and reactivity as well as polymerization conditions. These copolymers were then transformed into near-random PEI-PPI copolymers by controlled side-chain hydrolysis. The prepared PEI-PPI copolymers formed stable polyplexes with GFP-encoding plasmid DNA, as validated by dynamic light scattering. Furthermore, the cytotoxicity and transfection efficiency of polyplexes were evaluated in C2C12 mouse myoblasts. While the polymer chain length did not significantly increase the toxicity, a higher PPI content was associated with increased toxicity and also lowered the amount of polymers needed to achieve efficient transfection. The transfection efficiency was significantly influenced by the degree of polymerization of PEI-PPI, whereby longer polymers resulted in more transfected cells. Copolymers with 60% or lower PPI content exhibited a good balance between high plasmid-DNA transfection efficiency and low toxicity. Interestingly, these novel PEI-PPI copolymers revealed exceptional serum tolerance, whereby transfection efficiencies of up to 53% of transfected cells were achieved even under 50% serum conditions. These copolymers, especially PEI-PPI with DP500 and a 1:1 PEI/PPI ratio, were identified as promising transfection agents for plasmid DNA.
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- 2022
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4. Antifouling Properties of Poly(2‐Oxazoline)s and Poly(2‐Oxazine)s: Direct Comparison of Polymer‐Coated Surfaces with the Same Coating Parameters
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Jan Svoboda, Niccolo Lusiani, Radoslava Sivkova, Ognen Pop‐Georgievski, and Ondrej Sedlacek
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Polymers and Plastics ,Organic Chemistry ,Materials Chemistry - Published
- 2023
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5. Synthesis of 19F MRI Nanotracers by Dispersion Polymerization- Induced Self-Assembly of N‑(2,2,2-Trifluoroethyl)acrylamide in Water
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Vyshakh M. Panakkal, Dominik Havlicek, Ewa Pavlova, Marcela Filipová, Semira Bener, Daniel Jirak, and Ondrej Sedlacek
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Colloids,Fluorine,Magnetic resonance imaging,Nanoparticles,Polymers - Abstract
19F magnetic resonance imaging (MRI) using fluoropolymer tracers has recently emerged as a promising, noninvasive diagnostic tool in modern medicine. However, despite its potential, 19F MRI remains overlooked and underused due to the limited availability or unfavorable properties of fluorinated tracers. Herein, we report a straightforward synthetic route to highly fluorinated 19F MRI nanotracers via aqueous dispersion polymerization- induced self-assembly of a water-soluble fluorinated monomer. A polyethylene glycol-based macromolecular chaintransfer agent was extended by RAFT-mediated N-(2,2,2- trifluoroethyl)acrylamide (TFEAM) polymerization in water, providing fluorine-rich self-assembled nanoparticles in a single step. The resulting nanoparticles had different morphologies and sizes ranging from 60 to 220 nm. After optimizing their structure to maximize the magnetic relaxation of the fluorinated core, we obtained a strong 19F NMR/MRI signal in an aqueous environment. Their non-toxicity was confirmed on primary human dermal fibroblasts. Moreover, we visualized the nanoparticles by 19F MRI, both in vitro (in aqueous phantoms) and in vivo (after subcutaneous injection in mice), thus confirming their biomedical potential., O.S. and V.M.P. acknowledge the financial support from Czech Grant Foundation (grant Nr. 22-03102S) and Charles University Prague (grant PRIMUS/21/SCI/007). D.H. acknowledges the financial support from the Czech Grant Foundation (project number 22-02836S). D.J. acknowledges the financial support from the Ministry of Health of the Czech Republic (NU22-08-00286) and from the project National Institute for Research of Metabolic and Cardiovascular Diseases (Programme EXCELES, P r o j e c t no. LX22NPO5104)Funded by the European UnionNext Generation EU. The authors thank Dr. Carlos V. Melo for editing the manuscript.
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- 2022
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6. Ionisation of atoms determined by kappa refinement against 3D electron diffraction data
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Ashwin Suresh, Emre Yörük, Małgorzata K. Cabaj, Petr Brázda, Karel Výborný, Ondřej Sedláček, Christian Müller, Hrushikesh Chintakindi, Václav Eigner, and Lukáš Palatinus
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Science - Abstract
Abstract Conventional refinement strategies used for three-dimensional electron diffraction (3D ED) data disregard the bonding effects between the atoms in a molecule by assuming a pure spherical model called the Independent Atom model (IAM) and may lead to an inaccurate or biased structure. Here we show that it is possible to perform a refinement going beyond the IAM with electron diffraction data. We perform kappa refinement which models charge transfers between atoms while assuming a spherical model. We demonstrate the procedure by analysing five inorganic samples; quartz, natrolite, borane, lutecium aluminium garnet, and caesium lead bromide. Implementation of kappa refinement improved the structure model obtained over conventional IAM refinements and provided information on the ionisation of atoms. The results were validated against periodic DFT calculations. The work presents an extension of the conventional refinement of 3D ED data for a more accurate structure model which enables charge density information to be extracted.
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- 2024
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7. Cationic fluorinated micelles for cell labeling and 19F-MR imaging
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Natalia Jirát-Ziółkowska, Vyshakh Manayath Panakkal, Klára Jiráková, Dominik Havlíček, Ondřej Sedláček, and Daniel Jirák
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Fluorinated micelles ,Cell labeling ,19F magnetic resonance imaging ,19F magnetic resonance spectroscopy ,Medicine ,Science - Abstract
Abstract Magnetic resonance imaging (MRI) relies on appropriate contrast agents, especially for visualizing transplanted cells within host tissue. In recent years, compounds containing fluorine-19 have gained significant attention as MRI probe, particularly in dual 1H/19F-MR imaging. However, various factors affecting probe sensitivity, such as fluorine content and the equivalency of fluorine atoms, must be considered. In this study, we synthesized fluorinated micelles with adjustable surface positive charge density and investigated their physicochemical properties and MRI efficacy in phantoms and labeled cells. While the micelles exhibited clear signals in 19F-MR spectra and imaging, the concentrations required for MRI visualization of labeled cells were relatively high, adversely affecting cell viability. Despite their favourable physicochemical properties, achieving higher labeling rates without compromising cell viability during labeling remains a challenge for potential in vivo applications.
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- 2024
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8. Immiscibility of Chemically Alike Amorphous Polymers: Phase Separation of Poly(2-ethyl-2-oxazoline) and Poly(2-n-propyl-2-oxazoline)
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Richard Hoogenboom, Guy Van den Mooter, Ella Schoolaert, Karen De Clerck, Ronald Merckx, Melissa Everaerts, Bruno G. De Geest, Joachim F. R. Van Guyse, Jana Becelaere, Ondrej Sedlacek, and Dagmar R. D'hooge
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MISCIBILITY ,Polymers and Plastics ,Polymer Science ,SOLID DISPERSIONS ,02 engineering and technology ,Oxazoline ,SOLUBILITY ,010402 general chemistry ,BLENDS ,01 natural sciences ,Miscibility ,Inorganic Chemistry ,chemistry.chemical_compound ,Polymer chemistry ,Materials Chemistry ,DRUG-DELIVERY ,Solubility ,FORMULATION ,chemistry.chemical_classification ,Science & Technology ,Organic Chemistry ,Polymer ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Amorphous solid ,POLY(2-OXAZOLINE)S ,chemistry ,Nanofiber ,Physical Sciences ,Drug delivery ,Polymer blend ,0210 nano-technology ,NANOFIBERS - Abstract
In biomedicine, polymer blends are frequently applied in wound dressing design or drug delivery. Within these applications, poly(2-alkyl/aryl-2-oxazoline)s (PAOx) are emerging as a popular matrix d...
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- 2020
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9. Influence of Chain Length of Gradient and Block Copoly(2-oxazoline)s on Self-Assembly and Drug Encapsulation
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Ondrej Sedlacek, Valentin Bardoula, Elina Vuorimaa‐Laukkanen, Lars Gedda, Katarina Edwards, Aurel Radulescu, Grigoriy A. Mun, Yong Guo, Junnian Zhou, Hongbo Zhang, Véronique Nardello‐Rataj, Sergey Filippov, Richard Hoogenboom, Tampere University, Materials Science and Environmental Engineering, Charles University [Prague] (CU), Universiteit Gent = Ghent University (UGENT), Unité de Catalyse et Chimie du Solide - UMR 8181 (UCCS), Université d'Artois (UA)-Centrale Lille-Institut de Chimie du CNRS (INC)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Tampere University of Technology [Tampere] (TUT), Uppsala University, Forschungszentrum Jülich GmbH | Centre de recherche de Juliers, Helmholtz-Gemeinschaft = Helmholtz Association, Al-Farabi Kazakh National University [Almaty] (KazNU), University of Turku, and University of Reading (UOR)
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Drug Carriers ,Curcumin ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Polymers ,116 Chemical sciences ,221 Nanotechnology ,poly(2-oxazoline)s ,self-assembly ,General Chemistry ,nanomedicine ,Biomaterials ,216 Materials engineering ,gradient copolymers ,ddc:540 ,General Materials Science ,Hydrophobic and Hydrophilic Interactions ,Micelles ,Biotechnology - Abstract
Amphiphilic gradient copolymers represent a promising alternative to extensively used block copolymers due to their facile one-step synthesis by statistical copolymerization of monomers of different reactivity. Herein, an in-depth analysis is provided of micelles based on amphiphilic gradient poly(2-oxazoline)s with different chain lengths to evaluate their potential for micellar drug delivery systems and compare them to the analogous diblock copolymer micelles. Size, morphology, and stability of self-assembled nanoparticles, loading of hydrophobic drug curcumin, as well as cytotoxicities of the prepared nanoformulations are examined using copoly(2-oxazoline)s with varying chain lengths and comonomer ratios. In addition to several interesting differences between the two copolymer architecture classes, such as more compact self-assembled structures with faster exchange dynamics for the gradient copolymers, it is concluded that gradient copolymers provide stable curcumin nanoformulations with comparable drug loadings to block copolymer systems and benefit from more straightforward copolymer synthesis. The study demonstrates the potential of amphiphilic gradient copolymers as a versatile platform for the synthesis of new polymer therapeutics. acceptedVersion
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- 2021
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10. Conformational Parameters and Hydrodynamic Behavior of Poly(2-Methyl-2-Oxazoline) in a Broad Molar Mass Range
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Alexander S. Gubarev, Alexey A. Lezov, Anna N. Podsevalnikova, Nina G. Mikusheva, Petr A. Fetin, Ivan M. Zorin, Vladimir O. Aseyev, Ondrej Sedlacek, Richard Hoogenboom, and Nikolai V. Tsvetkov
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conformation ,biomedical applications ,PMeOx ,molecular hydrodynamic ,Polymers and Plastics ,poly(2-methyl-2-oxazoline) ,equilibrium rigidity ,thermodynamical solvent quality ,General Chemistry - Abstract
In this work, we report our results on the hydrodynamic behavior of poly(2-methyl-2-oxazoline) (PMeOx). PMeOx is gaining significant attention for use as hydrophilic polymer in pharmaceutical carriers as an alternative for the commonly used poly(ethylene glycol) (PEG), for which antibodies are found in a significant fraction of the human population. The main focus of the current study is to determine the hydrodynamic characteristics of PMeOx under physiological conditions, which serves as basis for better understanding of the use of PMeOx in pharmaceutical applications. This goal was achieved by studying PMeOx solutions in phosphate-buffered saline (PBS) as a solvent at 37 °C. This study was performed based on two series of PMeOx samples; one series is synthesized by conventional living cationic ring-opening polymerization, which is limited by the maximum chain length that can be achieved, and a second series is obtained by an alternative synthesis strategy based on acetylation of well-defined linear poly(ethylene imine) (PEI) prepared by controlled side-chain hydrolysis of a defined high molar mass of poly(2-ethyl-2-oxazoline). The combination of these two series of PMeOx allowed the determination of the Kuhn–Mark–Houwink–Sakurada equations in a broad molar mass range. For intrinsic viscosity, sedimentation and diffusion coefficients, the following expressions were obtained: η=0.015M0.77, s0=0.019M0.42 and D0=2600M−0.58, respectively. As a result, it can be concluded that the phosphate-buffered saline buffer at 37 °C represents a thermodynamically good solvent for PMeOx, based on the scaling indices of the equations. The conformational parameters for PMeOx chains were also determined, revealing an equilibrium rigidity or Kuhn segment length, (A) of 1.7 nm and a polymer chain diameter (d) of 0.4 nm. The obtained value for the equilibrium rigidity is very similar to the reported values for other hydrophilic polymers, such as PEG, poly(vinylpyrrolidone) and poly(2-ethyl-2-oxazoline), making PMeOx a relevant alternative to PEG.
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- 2023
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11. Defined High Molar Mass Poly(2‐Oxazoline)s
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Ondrej Sedlacek, Bart Verbraeken, Richard Hoogenboom, Bryn D. Monnery, Rachel Cavill, Valentin Victor Jerca, DKE Scientific staff, and RS: FSE DACS
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SOLAR-CELLS ,Dispersity ,TELECHELICS ,Oxazoline ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Catalysis ,cationic polymerisation ,chemistry.chemical_compound ,Chain (algebraic topology) ,Polymer chemistry ,Copolymer ,tautomerisation ,ring-opening polymerisation ,TEMPERATURE ,polymers ,2-METHYL-2-OXAZOLINE ,chemistry.chemical_classification ,MACROMONOMERS ,Molar mass ,Chain transfer ,General Chemistry ,Polymer ,General Medicine ,POLY(2-ETHYL-2-OXAZOLINE) NANODOTS ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,POLYMERIZATION ,chemistry ,Polymerization ,CYCLIC IMINO ETHERS ,0210 nano-technology - Abstract
Poly(2-alkyl-2-oxazoline)s (PAOx) are regaining interest for biomedical applications. However, their full potential is hampered by the inability to synthesise uniform high-molar mass PAOx. In this work, we proposed alternative intrinsic chain transfer mechanisms based on 2-oxazoline and oxazolinium chain-end tautomerisation and derived improved polymerization conditions to suppress chain transfer, allowing the synthesis of highly defined poly(2-ethyl-2-oxazoline) s up to ca. 50 kDa (dispersity (D)
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- 2018
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12. Double stimuli-responsive polymer systems: How to use crosstalk between pH- and thermosensitivity for drug depots
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Xiaodong Ye, Shilin Liu, Xinbo Wang, Petr Stepanek, Martin Hruby, Vlastimil Král, Ondrej Sedlacek, Leonid I. Kaberov, Sergey K. Filippov, and Anna Bogomolova
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chemistry.chemical_classification ,Polymers and Plastics ,Depot ,Organic Chemistry ,General Physics and Astronomy ,Nanotechnology ,02 engineering and technology ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Separation process ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Dynamic light scattering ,Drug delivery ,Materials Chemistry ,Copolymer ,Methacrylamide ,Turbidimetry ,0210 nano-technology - Abstract
We describe a new approach to depot drug delivery in which a copolymer poly[N-isopropyl acrylamide-co-N-(3-imidazolylpropyl)methacrylamide] (PNIPAM-co-ImPM) is considered as the main object and matrix for a new formulation strategy that provides the controlled and sustained release of an incorporated drug. The relatively low content of ImPM groups (1.6 mol%) was determined to be sufficient to introduce pH-sensitive behavior to the polymer. Together with NIPAM units, which possess a thermo-sensitive behavior, a dual sensitivity was imparted to the polymer that was investigated by means of turbidimetry and dynamic light scattering. A change in pH from 9 down to 4 was observed to result in the increase of the polymer transition temperature from 32 to 70 °C. The separation process is also accompanied with the formation of ca. 150–300 nm particles while above the transition temperature. The pH value of approximately 6.5 was defined as a boundary value, where certain properties of the system significantly change. This observation assumes a potential attractiveness of the system for biological applications in which injection is possible using a liquid form at pH ca. 5 without the risk of injection needle obstruction. In this way, a depot is formed at the application site upon simultaneously heating to body temperature and increasing the pH to the physiological value of 7.4. An in vivo experiment using the polymer in PBS (pH = 5.0) with paliperidone as a model drug showed excellent results regarding the release of the drug from a depot. The putative mechanism of action for our depot system is thoroughly described in the article.
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- 2016
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13. Straightforward Route to Superhydrophilic Poly(2-oxazoline)s via Acylation of Well-Defined Polyethylenimine
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Olga Janoušková, Bart Verbraeken, Richard Hoogenboom, and Ondrej Sedlacek
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Polymers and Plastics ,GLASS-TRANSITION TEMPERATURE ,PROTEIN ,Bioengineering ,Ether ,02 engineering and technology ,Oxazoline ,010402 general chemistry ,01 natural sciences ,Ring-opening polymerization ,Biomaterials ,Acylation ,chemistry.chemical_compound ,Hydrolysis ,GLYCOL) ,DRUG CARRIERS ,Materials Chemistry ,Humans ,Polyethyleneimine ,Transition Temperature ,CYTOTOXICITY ,Oxazoles ,POLY(2-ETHYL-2-OXAZOLINE) ,chemistry.chemical_classification ,Polyethylenimine ,POLY(ETHYLENE ,IN-VITRO ,Polymer ,021001 nanoscience & nanotechnology ,HYDROLYSIS ,Combinatorial chemistry ,Vitrification ,0104 chemical sciences ,RING-OPENING POLYMERIZATION ,Chemistry ,chemistry ,POLYMERS ,0210 nano-technology ,Glass transition ,Hydrophobic and Hydrophilic Interactions ,HeLa Cells - Abstract
Herein, we describe a new method for the synthesis of superhydrophilic poly(2-alkyl-2-oxazoline)s (PAOx) from poly(2-ethyl-2-oxazoline) (PEtOx). A well-defined linear polyethylenimine was prepared from PEtOx by controlled acidic hydrolysis of its side-chains followed by reacylation with different carboxylic acids. Using this protocol, we obtained a series of new hydrophilic PAOx containing side-chain ether groups with potential in biomaterials science. The relative hydrophilicity of the polymers was assessed, revealing that poly(2-methoxymethyl-2-oxazoline) (PMeO-MeOx) is the most hydrophilic PAOx reported to date. Additionally, the amorphous poly(2-methoxy-ethoxy-ethoxymethyl-2-oxazoline) (PDEGOx) shows the lowest reported glass transition temperature (-25 degrees C) within the PAOx family to date. The biomedical potential of the prepared polymers was further fortified by an in vitro cytotoxicity study, where all polymers appeared to be noncytotoxic. The described synthetic protocol is universal and can be extremely versatile, especially for PAOx that are difficult to prepare by conventional cationic ring-opening polymerization due to the monomer interference and/or degradation.
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- 2018
14. Sperm size evolution in African greenbuls (Passeriformes: Pycnonotidae)
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Melissah Rowe, Ulf Ottosson, David Hořák, Taiwo Crossby Omotoriogun, Ondrej Sedlacek, Terje Laskemoen, Tomáš Albrecht, and Jan T. Lifjeld
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0106 biological sciences ,0301 basic medicine ,endocrine system ,biology ,Phylogenetic tree ,urogenital system ,biology.organism_classification ,Bulbul ,010603 evolutionary biology ,01 natural sciences ,Sperm ,03 medical and health sciences ,030104 developmental biology ,Genetic drift ,Evolutionary biology ,Sexual selection ,Phyllastrephus ,Evolutionary dynamics ,Sperm competition ,reproductive and urinary physiology ,Ecology, Evolution, Behavior and Systematics - Abstract
Sperm morphology is highly diversified across the animal kingdom and recent comparative evidence from passerine birds suggests that postcopulatory sexual selection is a significant driver of sperm evolution. In the present study, we describe sperm size variation among 20 species of African greenbuls and one bulbul (Passeriformes: Pycnonotidae) and analyze the evolutionary differentiation of sperm size within a phylogenetic framework. We found significant interspecific variation in sperm size; with some genera exhibiting relatively long sperm (e.g. Eurillas) and others exhibiting short sperm head lengths (e.g. Phyllastrephus). However, our results suggest that contemporary levels of sperm competition are unlikely to explain sperm diversification within this clade: the coefficients of inter-male variation (CVbm) in sperm length were generally high, suggesting relatively low and homogeneous rates of extra-pair paternity. Finally, in a comparison of six evolutionary or tree transformation models, we found support for both the Kappa (evolutionary change primarily at nodes) and Lambda (lineage-specific evolutionary rates along branches) models in the evolutionary trajectories of sperm size among species. We therefore conclude that African greenbuls have more variable rates of sperm size evolution than expected from a neutral model of genetic drift. Understanding the evolutionary dynamics of sperm diversification remains a future challenge. The final version of this research has been published in Biological Journal of the Linnean Society. © 2016 Oxford University Press
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- 2015
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15. Conformational properties of biocompatible poly(2-ethyl-2-oxazoline)s in phosphate buffered saline
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Nikolai V. Tsvetkov, Bryn D. Monnery, Richard Hoogenboom, Sergey K. Filippov, A. S. Gubarev, A. A. Lezov, and Ondrej Sedlacek
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Materials science ,Polymers and Plastics ,Intrinsic viscosity ,Analytical chemistry ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Lower critical solution temperature ,chemistry.chemical_compound ,Dynamic light scattering ,LCST ,DILUTE-SOLUTION ,POLY(N-ISOPROPYLACRYLAMIDE) ,CHAINS ,chemistry.chemical_classification ,INTRINSIC-VISCOSITY ,Molar mass ,Organic Chemistry ,Polymer ,IN-VITRO ,021001 nanoscience & nanotechnology ,CANCER ,LIGHT-SCATTERING ,0104 chemical sciences ,POLY(2-OXAZOLINE)S ,Chemistry ,MOLECULAR-WEIGHT ,chemistry ,Poly(N-isopropylacrylamide) ,0210 nano-technology ,Ethylene glycol ,Macromolecule - Abstract
Inspired by the increasing popularity of poly(2-ethyl-2-oxazoline) (PEtOx) for biomedical applications, this study reports the complete and thorough solution analysis of the homologous series of biocompatible PEtOx samples in a very broad range of molecular weights ranging from 11.2 x 10(3) g mol(-1) up to 260 x 10(3) g mol(-1). The main focus of the research was on the determination of the conformational properties of PEtOx macromolecules at a temperature of 37 degrees C in phosphate buffered saline (PBS) simulating the parameters of physiological media. The polymers were studied in PBS solutions by analytical ultracentrifugation, dynamic light scattering (DLS), translational diffusion, and intrinsic viscosity measurements in a temperature range from 15 degrees C up to 72 degrees C. The complete set of Kuhn-Mark-Houwink-Sakurada scaling relationships revealed linear trends over the whole range of the studied molar masses, while the determined scaling indices at 37 degrees C correspond to the coil conformation in a thermodynamically good solvent ([eta] = 0.045 x M-0.62, s(0) = 0.010 x M-0.46 and D-0 = 1750 x M-0.54). Based on the intrinsic viscosity values (most sensitive characteristic to the size variations of polymer coils, [eta] similar to r(3)), it was demonstrated that PEtOx macromolecules in PBS solutions undergo a transition from swollen polymer coils with gradual deterioration of thermodynamic quality of solutions within the temperature range of 15-45 degrees C, reaching theta-conditions at 55 degrees C with further precipitation at 62-72 degrees C. Also, to the best of our knowledge, the conformational parameters (equilibrium rigidity/the Kuhn segment length and the diameter of the polymer chain) of PEtOx macromolecules were evaluated under physiological conditions for the first time and constitute A = 1.8 +/- 0.3 nm and d = 0.7 +/- 0.4 nm. These equilibrium rigidity values classify PEtOx as a flexible macromolecule with rigidity similar to that of poly(ethylene glycol). For the first time, we were able to demonstrate a direct influence of thermosensitivity on the rigidity of the biocompatible polymer: PEtOx. The Kuhn segment length is undoubtedly decreasing when approaching the LCST.
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- 2018
16. Poly(2-ethyl-2-oxazoline) conjugates with doxorubicin for cancer therapy: In vitro and in vivo evaluation and direct comparison to poly[N-(2-hydroxypropyl)methacrylamide] analogues
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Olga Janoušková, Richard Hoogenboom, Marie Zadinova, Maarten Vergaelen, Martin Hruby, Bart Verbraeken, Ondrej Sedlacek, Jana Mattova, Bryn D. Monnery, Anita Höcherl, Jan Kučka, and Jiri Panek
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Biodistribution ,Materials science ,Stereochemistry ,Polymers ,Biophysics ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biomaterials ,chemistry.chemical_compound ,Mice ,In vivo ,Cell Line, Tumor ,medicine ,Polyamines ,Animals ,Humans ,Doxorubicin ,N-(2-Hydroxypropyl) methacrylamide ,Acrylamides ,Drug Carriers ,Microscopy, Confocal ,021001 nanoscience & nanotechnology ,Flow Cytometry ,Combinatorial chemistry ,0104 chemical sciences ,Mice, Inbred C57BL ,Nanomedicine ,chemistry ,Mechanics of Materials ,Drug delivery ,Ceramics and Composites ,MCF-7 Cells ,Female ,0210 nano-technology ,Drug carrier ,Linker ,Conjugate ,medicine.drug ,HeLa Cells - Abstract
We designed and synthesized a new delivery system for the anticancer drug doxorubicin based on a biocompatible hydrophilic poly(2-ethyl-2-oxazoline) (PEtOx) carrier with linear architecture and narrow molar mass distribution. The drug is connected to the polymer backbone via an acid-sensitive hydrazone linker, which allows its triggered release in the tumor. The in vitro studies demonstrate successful cellular uptake of conjugates followed by release of the cytostatic cargo. In vivo experiments in EL4 lymphoma bearing mice revealed prolonged blood circulation, increased tumor accumulation and enhanced antitumor efficacy of the PEtOx conjugate having higher molecular weight (40 kDa) compared to the lower molecular weight (20 kDa) polymer. Finally, the in vitro and in vivo anti-cancer properties of the prepared PEtOx conjugates were critically compared with those of the analogous system based on the well-established PHPMA carrier. Despite the relatively slower intracellular uptake of PEtOx conjugates, resulting also in their lower cytotoxicity, there are no substantial differences in in vivo biodistribution and anti-cancer efficacy of both classes of polymer-Dox conjugates. Considering the synthetic advantages of poly(2-alkyl-2-oxazoline)s, the presented study demonstrates their potential as a versatile alternative to well-known PEO- or PHPMA-based materials for construction of drug delivery systems.
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- 2017
17. Glycogen-graft-poly(2-alkyl-2-oxazolines) – the new versatile biopolymer-based thermoresponsive macromolecular toolbox
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Sergey K. Filippov, Petr Stepanek, Martin Hruby, Ondrej Sedlacek, Stuart Turner, Zulfia Cernochova, Anna Bogomolova, Aneta Pospisilova, and Nikolai Matushkin
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chemistry.chemical_classification ,Nanostructure ,Chemistry ,General Chemical Engineering ,Cationic polymerization ,General Chemistry ,Polymer ,engineering.material ,Polymerization ,Dendrimer ,ddc:540 ,Polymer chemistry ,engineering ,Biopolymer ,Alkyl ,Macromolecule - Abstract
This study is focused on thermoresponsive glycogen-graft-poly(2-alkyl-2-oxazolines), a new group of nanostructured hybrid dendrimeric stimuli-responsive polymers connecting the body's own biodegradable polysaccharidic dendrimer glycogen with the widely tuneable thermoresponsive behavior of polypeptide-analogic poly(2-alkyl-2-oxazolines), which are known to be biocompatible. Glycogen-graft-poly(2-alkyl-2-oxazolines) were prepared by a simple one-pot two-step procedure involving cationic ring-opening polymerization of 2-alkyl-2-oxazolines followed by termination of the living cationic ends with sodium glycogenate. As confirmed by light and X-ray scattering, as well as cryo-transmission electron microscopy, the grafted dendrimer structure allows easy adjustment of the cloud point temperature, the concentration dependence and nanostructure of the self-assembled phase separated polymer by crosstalk during graft composition, the graft length and the grafting density, in a very wide range.
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- 2014
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18. Multistage-targeted pH-responsive polymer conjugate of Auger electron emitter: Optimized design and in vivo activity
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Pavla Pouckova, Jana Mattova, Marie Zadinova, Martin Studenovsky, Martin Hruby, Ondrej Sedlacek, Martin Parizek, and Jan Kučka
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Polymers ,Endosome ,Stereochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,Breast Neoplasms ,Electrons ,Iodine Radioisotopes ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,Drug Delivery Systems ,In vivo ,Animals ,Methacrylamide ,Ellipticines ,Mice, Inbred BALB C ,Molecular Structure ,Chemistry ,Biological activity ,Hydrogen-Ion Concentration ,Drug delivery ,Biophysics ,Female ,Titration ,Drug Screening Assays, Antitumor ,Linker ,Conjugate - Abstract
Auger electrons-emitting radioisotopes (such as iodine-125) are a potentially effective cancer treatment. They are extremely biologically effective, but only within a short range (nanometers). Their use as an effective cancer therapy requires that they will be transported within close proximity of DNA by an intercalator, where they induce double-strand breaks leading to cell death. This type of therapy may be even more beneficial when associated with drug delivery systems. In this report, we describe an optimized triple-targeted polymer delivery system for the intercalator ellipticine, which contains radioisotope iodine-125 with high specific radioactivity (63.2 GBq/mg). This compound is linked to an N-(2-hydroxypropyl)methacrylamide copolymer via an optimized acid-sensitive hydrazone linker. The system is stable at pH 7.4 (representing the pH of blood plasma), and the radioiodine-containing biologically active intercalator is released upon a decrease in pH (44% of the intercalator is released after 24 h of incubation in pH 5.0 buffer, which mimics the pH in late endosomes). The active compound is a potent intercalator, as shown with direct titration with a DNA solution, and readily penetrates into cell nuclei, as observed by confocal microscopy. Its polymer conjugate is internalized into endosomes and releases the radioactive intercalator, which accumulates in the cell nuclei. In vivo experiments on mice with 4T1 murine breast cancer resulted in a statistically significant increase in the survival of mice treated with the polymer radioconjugate. The free radiolabeled intercalator was also shown to be effective, but it was less potent than the polymer conjugate.
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- 2014
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19. Poly(2-oxazoline)-protein conjugates
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Richard Hoogenboom, Ondrej Sedlacek, and Victor Retamero De La Rosa
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Biocompatible polymers ,Polymers and Plastics ,Organic Chemistry ,General Physics and Astronomy ,02 engineering and technology ,Polyethylene glycol ,Oxazoline ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,PEG ratio ,Materials Chemistry ,0210 nano-technology ,Conjugate - Abstract
Poly(2-oxazoline)s (in literature abbreviated as PAOx, POx, or POZ, herein referred to as PAOx) represent an emerging class of biocompatible polymers outperforming polyethylene glycol (PEG) in many aspects, including their high synthetic versatility and structural modularity. In this review, we provide a brief introduction to PAOx chemistry and biology to sketch their potential in biomaterials science. Further, we provide a detailed comprehensive overview of the literature on PAOx-protein conjugates with emphasis on their critical evaluation and comparison with analogous systems based on PEG. Based on this literature overview, PAOx seem to be an excellent alternative to PEG in the construction of therapeutic polymer-protein conjugates.
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- 2019
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20. Thirteen moth species (Lepidoptera, Erebidae, Noctuidae) newly recorded in South Africa, with comments on their distribution
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Sylvain Delabye, Fernando Gaona, Pavel Potocký, Llewellyn Foxcroft, Pavla Halamová, Martin Hejda, Sandra MacFadyen, Klára Pyšková, Ondřej Sedláček, Markéta Staňková, David Storch, Petr Pyšek, and Robert Tropek
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Afrotropics ,faunistic report ,Heterocera ,Kruger ,Biology (General) ,QH301-705.5 - Abstract
Thanks to the high diversity of ecosystems and habitats, South Africa harbours tremendous diversity of insects. The Kruger National Park, due to its position close to the border between two biogeographic regions and high heterogeneity of environmental conditions, represents an insufficiently studied hotspot of lepidopteran diversity. During our ecological research in the Kruger National Park, we collected abundant moth material, including several interesting faunistic records reported in this study.We reported 13 species of moths which had not yet been recorded in South Africa. In many cases, our records represented an important extension of the species’ known distribution, including two species (Ozarba gaedei and O. persinua) whose distribution ranges extended into the Zambezian biogeographic region. Such findings confirmed the poor regional knowledge of lepidopteran diversity.
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- 2022
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21. Gut microbiota variation between climatic zones and due to migration strategy in passerine birds
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Lucie Schmiedová, Jakub Kreisinger, Jan Kubovčiak, Martin Těšický, Jean-Francois Martin, Oldřich Tomášek, Tereza Kauzálová, Ondřej Sedláček, and Tomáš Albrecht
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faecal microbiome ,gastrointestinal tract ,metabarcoding ,climatic zones ,passerine birds ,Microbiology ,QR1-502 - Abstract
IntroductionDecreasing biotic diversity with increasing latitude is an almost universal macroecological pattern documented for a broad range of taxa, however, there have been few studies focused on changes in gut microbiota (GM) across climatic zones.MethodsUsing 16S rRNA amplicon profiling, we analyzed GM variation between temperate (Czechia) and tropical (Cameroon) populations of 99 passerine bird species and assessed GM similarity of temperate species migrating to tropical regions with that of residents/short-distance migrants and tropical residents. Our study also considered the possible influence of diet on GM.ResultsWe observed no consistent GM diversity differences between tropical and temperate species. In the tropics, GM composition varied substantially between dry and rainy seasons and only a few taxa exhibited consistent differential abundance between tropical and temperate zones, irrespective of migration behavior and seasonal GM changes. During the breeding season, trans-Saharan migrant GM diverged little from species not overwintering in the tropics and did not show higher similarity to tropical passerines than temperate residents/short-distance migrants. Interestingly, GM of two temperate-breeding trans-Saharan migrants sampled in the tropical zone matched that of tropical residents and converged with other temperate species during the breeding season. Diet had a slight effect on GM composition of tropical species, but no effect on GM of temperate hosts.DiscussionConsequently, our results demonstrate extensive passerine GM plasticity, the dominant role of environmental factors in its composition and limited effect of diet.
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- 2023
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22. New records of six moth (Lepidoptera: Erebidae, Lasiocampidae) species in south African countries, with comments on their distribution
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Sylvain Delabye, Ondřej Sedláček, Vincent Maicher, and Robert Tropek
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Afrotropics ,faunistic report ,light trapping ,sav ,Biology (General) ,QH301-705.5 - Abstract
Southern Africa hosts a high diversity of ecosystems and habitats with tremendous diversity of Lepidoptera. Although it belongs among most studied parts of the Afrotropics, the knowledge on diversity and distribution of south African moth fauna remains insufficient. To partly fill this gap, we surveyed macromoths by automatic light traps in seven localities in three relatively less sampled south African countries.We reported 14 species and one genus (Remigioides) of moths which have not yet been recorded in Namibia, Botswana, or Zimbabwe. Although none of these records broadened the known distribution of individual species to a new biogeographic region, they still fill important gaps in their distribution. Especially, the known distributional ranges of two species have been substantially extended, although still within the same biogeographic regions: ca. 800 km southwards for Remigioides remigina (Mabille, 1884), and ca. 600 km westwards for Haplopacha cinerea Aurivillius, 1905.
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- 2020
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23. Patterns of host–parasite associations in tropical lice and their passerine hosts in Cameroon
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Magdalena Gajdošová, Oldřich Sychra, Jakub Kreisinger, Ondřej Sedláček, Eric Djomo Nana, Tomáš Albrecht, and Pavel Munclinger
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cospeciation ,feather lice ,host switching ,host–parasite associations ,passerines ,tropical ecology ,Ecology ,QH540-549.5 - Abstract
Abstract Coevolutionary processes that drive the patterns of host–parasite associations can be deduced through congruence analysis of their phylogenies. Feather lice and their avian hosts have previously been used as typical model systems for congruence analysis; however, such analyses are strongly biased toward nonpasserine hosts in the temperate zone. Further, in the Afrotropical region especially, cospeciation studies of lice and birds are entirely missing. This work supplements knowledge of host–parasite associations in lice using cospeciation analysis of feather lice (genus Myrsidea and the Brueelia complex) and their avian hosts in the tropical rainforests of Cameroon. Our analysis revealed a limited number of cospeciation events in both parasite groups. The parasite–host associations in both louse groups were predominantly shaped by host switching. Despite a general dissimilarity in phylogeny for the parasites and hosts, we found significant congruence in host–parasite distance matrices, mainly driven by associations between Brueelia lice and passerine species of the Waxbill (Estrildidae) family, and Myrsidea lice and their Bulbul (Pycnonotidae) host species. As such, our study supports the importance of complex biotic interactions in tropical environments.
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- 2020
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24. Moth Diversity Increases along a Continent-Wide Gradient of Environmental Productivity in South African Savannahs
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Sylvain Delabye, David Storch, Ondřej Sedláček, Tomáš Albrecht, David Hořák, Vincent Maicher, Anna Tószögyová, and Robert Tropek
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abundance ,Afrotropics ,Heterocera ,insect ,diversity patterns ,light trapping ,Science - Abstract
Environmental productivity, i.e., the amount of biomass produced by primary producers, belongs among the key factors for the biodiversity patterns. Although the relationship of diversity to environmental productivity differs among studied taxa, detailed data are largely missing for most groups, including insects. Here, we present a study of moth diversity patterns at local and regional scales along a continent-wide gradient of environmental productivity in southern African savannah ecosystems. We sampled diversity of moths (Lepidoptera: Heterocera) at 120 local plots along a gradient of normalized difference vegetation index (NDVI) from the Namib Desert to woodland savannahs along the Zambezi River. By standardized light trapping, we collected 12,372 specimens belonging to 487 moth species. The relationship between species richness for most analyzed moth groups and environmental productivity was significantly positively linear at the local and regional scales. The absence of a significant relationship of most moth groups’ abundance to environmental productivity did not support the role of the number of individuals in the diversity–productivity relationship for south African moths. We hypothesize the effects of water availability, habitat complexity, and plant diversity drive the observed moth diversity patterns.
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- 2022
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25. High aboveground carbon stock of African tropical montane forests
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Janvier Lisingo, Tibebu Y. Simegn, Miroslav Svoboda, Murielle Simo-Droissart, Dismas Hakizimana, Charles Kayijamahe, Emanuel H. Martin, Aida Cuni-Sanchez, Jan Altman, Petri Pellikka, Hans Verbeeck, Rob Marchant, Andreas Hemp, Jefferson S. Hall, Jiri Dolezal, Janne Heiskanen, Valerio Avitabile, Pascal Boeckx, Olivier J. Hardy, Vincent Droissart, Roy E. Gereau, Mark Lung, Felix Nchu, Hermann Taedoumg, Philip J. Platts, Charlotte E. Wheeler, Jonathan Timberlake, Colin A. Chapman, Brigitte Nyirambangutse, Andrew J. Plumptre, Demisse Sheleme, Abreham Berta Aneseyee, Joseph Okello, Terese B. Hart, Peter M. Umunay, John Tshibamba Mukendi, Lan Qie, Simon L. Lewis, Mathieu Decuyper, Senbeta Feyera, Teshome Soromessa, Kelvin S.-H. Peh, Corneille E. N. Ewango, Simon Willcock, Wannes Hubau, Aster Gebrekirstos, Edward T. A. Mitchard, Ben DeVries, Gerard Imani, Martin Herold, David Horák, Andrew R. Marshall, Serge K. Begne, Achim Bräuning, Kim Calders, C. Amani, A. C. Hamilton, Marie Noel Djuikouo Kamdem, Jean-Remy Makana, Martin J. P. Sullivan, Mwangi James Kinyanjui, Yadvinder Malhi, Tomáš Albrecht, Tom Muller, Hazel M. Chapman, Robert Bitariho, Julia A. Klein, Alain Senghor K. Ngute, Marijn Bauters, Eustrate Uzabaho, Göran Wallin, Christine B. Schmitt, Hari Adhikari, Iveren Abiem, Franklin Bulonvu, Ulrike Hiltner, Moses Nsanyi Sainge, James Taplin, Amy C. Bennett, John T. Woods, Sean C. Thomas, Jason Vleminckx, David Taylor, Oliver L. Phillips, Alexandra C. Morel, James A. Comiskey, Douglas Sheil, Thalès de Haulleville, Francesco Rovero, Darlington Tuagben, Neil D. Burgess, Jon C. Lovett, Terry Sunderland, Rodrigue Batumike, Martin Gilpin, Bonaventure Sonké, Jan Bogaert, Ondrej Sedlacek, Etienne Zibera, David Kenfack, Lindsay F. Banin, Hans Beeckman, University of York [York, UK], Manchester Metropolitan University (MMU), International Union for Conservation of Nature (IUCN), University of Leeds, Université officielle de Bukavu, Royal Museum for Central Africa [Tervuren] (RMCA), University of Jos [Nigeria], Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Charles University [Prague] (CU), Addis Ababa University (AAU), European Commission - Joint Research Centre [Ispra] (JRC), UK Centre for Ecology & Hydrology, Natural Environment Research Council (NERC), Universiteit Gent = Ghent University (UGENT), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Rwanda, European Project: 328075,EC:FP7:PEOPLE,FP7-PEOPLE-2012-IEF,ASEC-DRYLAND-FORESTS(2014), University of Helsinki, Universiteit Gent = Ghent University [Belgium] (UGENT), Earth Change Observation Laboratory (ECHOLAB), and Department of Geosciences and Geography
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0106 biological sciences ,DIVERSITY ,Endangered species ,Datasets as Topic ,Geographic Mapping ,life_on_land ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,01 natural sciences ,Trees ,Laboratory of Geo-information Science and Remote Sensing ,Biomass ,0303 health sciences ,Biomass (ecology) ,GLOBAL PATTERNS ,Multidisciplinary ,Ecology ,Reforestation ,EASTERN ARC MOUNTAINS ,Carbon cycle ,[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics ,Biogeochemistry ,PE&RC ,Geography ,MAP ,C180 Ecology ,climate_action ,STORAGE ,Carbon Sequestration ,Conservation of Natural Resources ,Rainforest ,Climate Change ,Climate change ,010603 evolutionary biology ,Ecology and Environment ,Earth and environmental sciences ,03 medical and health sciences ,[SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems ,Forest ecology ,Life Science ,Ecosystem services ,Bosecologie en Bosbeheer ,Laboratorium voor Geo-informatiekunde en Remote Sensing ,Ecosystem ,1172 Environmental sciences ,030304 developmental biology ,Tropical Climate ,SINK ,Forestry ,15. Life on land ,Carbon ,Forest Ecology and Forest Management ,Attitude ,13. Climate action ,Africa ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Tropical rainforest - Abstract
Tropical forests store 40–50 per cent of terrestrial vegetation carbon 1. However, spatial variations in aboveground live tree biomass carbon (AGC) stocks remain poorly understood, in particular in tropical montane forests 2. Owing to climatic and soil changes with increasing elevation 3, AGC stocks are lower in tropical montane forests compared with lowland forests 2. Here we assemble and analyse a dataset of structurally intact old-growth forests (AfriMont) spanning 44 montane sites in 12 African countries. We find that montane sites in the AfriMont plot network have a mean AGC stock of 149.4 megagrams of carbon per hectare (95% confidence interval 137.1–164.2), which is comparable to lowland forests in the African Tropical Rainforest Observation Network 4 and about 70 per cent and 32 per cent higher than averages from plot networks in montane 2,5,6 and lowland 7 forests in the Neotropics, respectively. Notably, our results are two-thirds higher than the Intergovernmental Panel on Climate Change default values for these forests in Africa 8. We find that the low stem density and high abundance of large trees of African lowland forests 4 is mirrored in the montane forests sampled. This carbon store is endangered: we estimate that 0.8 million hectares of old-growth African montane forest have been lost since 2000. We provide country-specific montane forest AGC stock estimates modelled from our plot network to help to guide forest conservation and reforestation interventions. Our findings highlight the need for conserving these biodiverse 9,10 and carbon-rich ecosystems.
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