6 results on '"Pineda-Pampliega J"'
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2. Nasotracheal Microbiota of Nestlings of Parent White storks with Different Foraging Habits in Spain.
- Author
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Abdullahi IN, Juárez-Fernández G, Höfle Ú, Cardona-Cabrera T, Mínguez D, Pineda-Pampliega J, Lozano C, Zarazaga M, and Torres C
- Subjects
- Animals, Spain epidemiology, Anti-Bacterial Agents, Gram-Negative Bacteria, Gram-Positive Bacteria, Birds, Staphylococcus aureus, Ecosystem
- Abstract
Migratory storks could be vectors of transmission of bacteria of public health concern mediated by the colonization, persistence and excretion of such bacteria. This study aims to determine genera/species diversity, prevalence, and co-colonization indices of bacteria obtained from tracheal (T) and nasal (N) samples from storks in relation to exposure to point sources through foraging. One-hundred and thirty-six samples from 87 nestlings of colonies of parent white storks with different foraging habits (natural habitat and landfills) were obtained (84 T-samples and 52 N-samples) and processed. Morphologically distinct colonies (up to 12/sample) were randomly selected and identified by MALDI-TOF-MS. About 87.2% of the total 806 isolates recovered were identified: 398 from T-samples (56.6%) and 305 from N-samples (43.4%). Among identified isolates, 17 genera and 46 species of Gram-positive and Gram-negative bacteria were detected, Staphylococcus (58.0%) and Enterococcus (20.5%) being the most prevalent genera. S. sciuri was the most prevalent species from T (36.7%) and N (34.4%) cavities of total isolates, followed by E. faecalis (11.1% each from T and N), and S. aureus [T (6.5%), N (13.4%)]. Of N-samples, E. faecium was significantly associated with nestlings of parent storks foraging in landfills (p = 0.018). S. sciuri (p = 0.0034) and M. caseolyticus (p = 0.032) from T-samples were significantly higher among nestlings of parent storks foraging in natural habitats. More than 80% of bacterial species in the T and N cavities showed 1-10% co-colonization indices with one another, but few had ≥ 40% indices. S. sciuri and E. faecalis were the most frequent species identified in the stork nestlings. Moreover, they were highly colonized by other diverse and potentially pathogenic bacteria. Thus, storks could be sentinels of point sources and vehicles of bacterial transmission across the "One Health" ecosystems., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
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3. Developing a framework for open and FAIR data management practices for next generation risk- and benefit assessment of fish and seafood.
- Author
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Pineda-Pampliega J, Bernhard A, Hannisdal R, Ørnsrud R, Mathisen GH, Solstad G, and Rasinger JD
- Abstract
Risk and risk-benefit assessments of food are complex exercises, in which access to and use of several disconnected individual stand-alone databases is required to obtain hazard and exposure information. Data obtained from such databases ideally should be in line with the FAIR principles, i.e. the data must be Findable, Accessible, Interoperable and Reusable. However, often cases are encountered when one or more of these principles are not followed. In this project, we set out to assess if existing commonly used databases in risk assessment are in line with the FAIR principles. We also investigated how access, interoperability and reusability of data could be improved. We used the OpenFoodTox and the Seafood database as examples and showed how commonly used freely available open-source tools and repositories can be implemented in the data extraction process of risk assessments to increase data reusability and crosstalk across different databases., (© 2022 Wiley‐VCH Verlag GmbH & Co. KgaA on behalf of the European Food Safety Authority.)
- Published
- 2022
- Full Text
- View/download PDF
4. Foraging at Solid Urban Waste Disposal Sites as Risk Factor for Cephalosporin and Colistin Resistant Escherichia coli Carriage in White Storks ( Ciconia ciconia ).
- Author
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Höfle U, Jose Gonzalez-Lopez J, Camacho MC, Solà-Ginés M, Moreno-Mingorance A, Manuel Hernández J, De La Puente J, Pineda-Pampliega J, Aguirre JI, Torres-Medina F, Ramis A, Majó N, Blas J, and Migura-Garcia L
- Abstract
White stork ( Ciconia ciconia ) may act as a reservoir and vehicle of cephalosporin resistant (CR) Escherichia coli . Between 2011 and 2014, we sampled white storks from colonies exposed to different degrees of anthropic pressure across the major areas of natural distribution of white storks in Spain. Cloacal swab samples ( n = 467) were obtained from individuals belonging to 12 different colonies from six different regions. Additionally, 70 samples were collected from recently deposited droppings at the base of nesting platforms. We phenotypically characterized E. coli isolates, confirmed presence of CR genes and classified plasmids. Risk factors for acquiring these genes were assessed. Overall, 8.8% (41 out of 467) storks carried CR E. coli in their cloaca and five (7.1%) were identified from recently deposited droppings; therefore, 46 isolates were further characterized. Of them, 20 contained bla
CTX-M- 1 , nine blaCMY- 2 , six blaCTX-M- 14 , four blaSHV- 12 , three blaCTX-M- 15 , two blaCTX-M- 32 , one blaCTX-M- 1 together with blaCMY- 2 , and one blaCTX-M- 1 together with blaSHV- 12 . All were multidrug-resistant, and four harbored the plasmid-mediated colistin resistance mcr-1 gene. CR genes were associated with the presence of IncI1, IncFIB, and IncN replicon families. Xba I-macrorestriction analysis revealed a great diversity among most of the Xba I-PFGE types, but indistinguishable types were also seen with isolates obtained from different locations. Clonal complex 10 was the most common among CR E. coli and two blaCTX-M- 15 positive isolates were identified as B2-ST131. Carriage of CR E. coli was significantly higher in colonies located close to solid urban waste disposal sites in which foraging on human waste was more likely and in one case to cattle grazing. The co-occurrence of blaCMY- 2 and mcr -1 on plasmids of E. coli isolated from wild birds as early as 2011 is of note, as the earliest previous report of mcr -1 in wild birds is from 2016. Our study shows that foraging at landfills and in association with cattle grazing are important risk factors for the acquisition of CR E. coli in white storks., (Copyright © 2020 Höfle, Jose Gonzalez-Lopez, Camacho, Solà-Ginés, Moreno-Mingorance, Manuel Hernández, De La Puente, Pineda-Pampliega, Aguirre, Torres-Medina, Ramis, Majó, Blas and Migura-Garcia.)- Published
- 2020
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5. Antioxidant supplementation slows telomere shortening in free-living white stork chicks.
- Author
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Pineda-Pampliega J, Herrera-Dueñas A, Mulder E, Aguirre JI, Höfle U, and Verhulst S
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- Animals, Antioxidants metabolism, Birds physiology, Dietary Supplements, Telomere Shortening physiology
- Abstract
Telomere length (TL) and shortening is increasingly shown to predict variation in survival and lifespan, raising the question of what causes variation in these traits. Oxidative stress is well known to accelerate telomere attrition in vitro , but its importance in vivo is largely hypothetical. We tested this hypothesis experimentally by supplementing white stork ( Ciconia ciconia ) chicks with antioxidants. Individuals received either a control treatment, or a supply of tocopherol (vitamin E) and selenium, which both have antioxidant properties. The antioxidant treatment increased the concentration of tocopherol for up to two weeks after treatment but did not affect growth. Using the telomere restriction fragment technique, we evaluated erythrocyte TL and its dynamics. Telomeres shortened significantly over the 21 days between the baseline and final sample, independent of sex, mass, size and hatching order. The antioxidant treatment significantly mitigated shortening rate of average TL (-31% in shorter telomeres; percentiles 10th, 20th and 30th). Thus, our results support the hypothesis that oxidative stress shortens telomeres in vivo .
- Published
- 2020
- Full Text
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6. Urban blackbirds have shorter telomeres.
- Author
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Ibáñez-Álamo JD, Pineda-Pampliega J, Thomson RL, Aguirre JI, Díez-Fernández A, Faivre B, Figuerola J, and Verhulst S
- Subjects
- Animals, Cities, Female, Forests, France, Male, Songbirds genetics, Spain, Telomere physiology, Ecosystem, Songbirds physiology, Telomere Shortening physiology
- Abstract
Urbanization, one of the most extreme human-induced environmental changes, represents a major challenge for many organisms. Anthropogenic habitats can have opposing effects on different fitness components, for example, by decreasing starvation risk but also health status. Assessment of the net fitness effect of anthropogenic habitats is therefore difficult. Telomere length is associated with phenotypic quality and mortality rate in many species, and the rate of telomere shortening is considered an integrative measure of the 'life stress' experienced by an individual. This makes telomere length a promising candidate for examining the effects of urbanization on the health status of individuals. We investigated whether telomere length differed between urban and forest-dwelling common blackbirds ( Turdus merula ). Using the terminal restriction fragment assay, we analysed telomere length in yearlings and older adults from five population dyads (urban versus forest) across Europe. In both age classes, urban blackbirds had significantly shorter telomeres (547 bp) than blackbirds in natural habitats, indicating lower health status in urban blackbirds. We propose several potential hypotheses to explain our results. Our findings show that even successful city dwellers such as blackbirds pay a price for living in these anthropogenic habitats., (© 2018 The Author(s).)
- Published
- 2018
- Full Text
- View/download PDF
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