8 results on '"Qunfang YU"'
Search Results
2. Development of a real-time fluorescence loop-mediated isothermal amplification assay for rapid and quantitative detection of Fusarium oxysporum f. sp. cubense tropical race 4 in soil.
- Author
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Xin Zhang, He Zhang, Jinji Pu, Yanxiang Qi, Qunfang Yu, Yixian Xie, and Jun Peng
- Subjects
Medicine ,Science - Abstract
Fusarium oxysporum f. sp. cubense (Foc), the causal agent of Fusarium wilt (Panama disease), is one of the most devastating diseases of banana (Musa spp.). The Foc tropical race 4 (TR4) is currently known as a major concern in global banana production. No effective resistance is known in Musa to Foc, and no effective measures for controlling Foc once banana plants have been infected in place. Early and accurate detection of Foc TR4 is essential to protect banana industry and guide banana planting. A real-time fluorescence loop-mediated isothermal amplification assay (RealAmp) was developed for the rapid and quantitative detection of Foc TR4 in soil. The detection limit of the RealAmp assay was approximately 0.4 pg/µl plasmid DNA when mixed with extracted soil DNA or 10(3) spores/g of artificial infested soil, and no cross-reaction with other relative pathogens were observed. The RealAmp assay for quantifying genomic DNA of TR4 was confirmed by testing both artificially and naturally infested samples. Quantification of the soil-borne pathogen DNA of Foc TR4 in naturally infested samples was no significant difference compared to classic real-time PCR (P>0.05). Additionally, RealAmp assay was visual with an improved closed-tube visual detection system by adding SYBR Green I fluorescent dye to the inside of the lid prior to amplification, which avoided the inhibitory effects of the stain on DNA amplification and makes the assay more convenient in the field and could thus become a simple, rapid and effective technique that has potential as an alternative tool for the detection and monitoring of Foc TR4 in field, which would be a routine DNA-based testing service for the soil-borne pathogen in South China.
- Published
- 2013
- Full Text
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3. Fibrinogen improves liver function via promoting cell aggregation and fibronectin assembly in hepatic spheroids
- Author
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Ruihong Li, Jie Ma, Lola M. Reid, Jinmei Diao, Juan Liu, Xuer Sun, Qunfang Yu, Chun Yang, Jiexin Yan, Yi Wang, and Yunfang Wang
- Subjects
Biophysics ,Bioengineering ,Biomaterials ,Extracellular matrix ,Cell surface receptor ,medicine ,Animals ,biology ,Chemistry ,Wnt signaling pathway ,Fibrinogen ,Cell aggregation ,Cell biology ,Extracellular Matrix ,Fibronectins ,Rats ,Fibronectin ,medicine.anatomical_structure ,Liver ,Mechanics of Materials ,Hepatocyte ,Ceramics and Composites ,biology.protein ,Hepatocytes ,Liver function ,Signal transduction - Abstract
Many key functions performed by the liver depend on the interaction between parenchymal cells and the microenvironment comprised of neighboring cells and extracellular matrix. The biological macromolecules in the matrix, which are dynamically changing, participate in various physiological processes through interactions with cell surface receptors, antigens, and ion channels. We found the rat liver biomatrix scaffold (LBS) prepared from adult rats is more effective in enhancing the function of hepatic spheroids than those derived from newborn or senile rats. Combined with matrisome and bioinformatics analyses, we further found that the glycoproteins, fibronectin and fibrinogen may have special potential for improving hepatocyte function. Human primary hepatocyte organoids and HepaRG spheroids showed more mature hepatocyte phenotype after adding fibronectin and fibrinogen to the culture system. During the cultivation of hepatic spheroids, fibrinogen resulted in an increase in cell-cell junction by promoting cell aggregation and helping fibronectin to assemble on cell surface, which resulted in activation of Wnt/β-catenin pathway. Fibronectin-integrin αVβ1-Wnt/β-catenin may be the axis of signal transduction in parenchymal cell microenvironment. Importantly, fibrinogen enhances the signal transduction. These results suggest that the addition of fibronectin and fibrinogen to the 3D culture system is a new strategy for inducing parenchymal cell functional maturation.
- Published
- 2021
4. Sweat gland organoids contribute to cutaneous wound healing and sweat gland regeneration
- Author
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Xuan Wang, Yunfang Wang, Qunfang Yu, Su Yuxin, Jinmei Diao, Mingyang Chang, Fang Yan, Juan Liu, Shuyong Wang, and Baolin Guo
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0301 basic medicine ,Cancer Research ,Immunology ,Cell Culture Techniques ,Article ,Mice ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,stomatognathic system ,Dermis ,Sweat gland ,medicine ,Organoid ,Animals ,Regeneration ,lcsh:QH573-671 ,Progenitor cell ,Cells, Cultured ,Wound Healing ,Matrigel ,Keratin-18 ,Tissue Engineering ,integumentary system ,Epidermis (botany) ,lcsh:Cytology ,Chemistry ,Stem Cells ,Regeneration (biology) ,Cell Differentiation ,Epithelial Cells ,Skin Transplantation ,Cell Biology ,Aquaporin 5 ,Sweat Glands ,Cell biology ,Organoids ,Drug Combinations ,030104 developmental biology ,medicine.anatomical_structure ,Epidermal Cells ,030220 oncology & carcinogenesis ,Proteoglycans ,Collagen ,Laminin ,Epidermis ,Stem cell - Abstract
Sweat glands perform a vital thermoregulatory function in mammals. Like other skin components, they originate from epidermal progenitors. However, they have low regenerative potential in response to injury. We have established a sweat gland culture and expansion method using 3D organoids cultures. The epithelial cells derived from sweat glands in dermis of adult mouse paw pads were embedded into Matrigel and formed sweat gland organoids (SGOs). These organoids maintained remarkable stem cell features and demonstrated differentiation capacity to give rise to either sweat gland cells (SGCs) or epidermal cells. Moreover, the bipotent SGO-derived cells could be induced into stratified epidermis structures at the air−liquid interface culture in a medium tailored for skin epidermal cells in vitro. The SGCs embedded in Matrigel tailored for sweat glands formed epithelial organoids, which expressed sweat-gland-specific markers, such as cytokeratin (CK) 18 and CK19, aquaporin (AQP) 5 and αATP. More importantly, they had potential of regeneration of epidermis and sweat gland when they were transplanted into the mouse back wound and claw pad with sweat gland injury, respectively. In summary, we established and optimized culture conditions for effective generation of mouse SGOs. These cells are candidates to restore impaired sweat gland tissue as well as to improve cutaneous skin regeneration.
- Published
- 2019
5. Quantitative Strategies Based on an Improved K-means Algorithm
- Author
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Yike Wu, Qunfang Yu, Lian Xue, Xinyu Wang, and Ruiyu Yu
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Computer science ,k-means clustering ,Algorithm - Published
- 2017
6. Analysis of the 16S–23S rRNA Gene Internal Transcribed Spacer Region in Klebsiella Species
- Author
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Lei Liu, Lu Feng, Qunfang Yu, Boyang Cao, Lei Wang, Min Wang, and Qili Gao
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DNA, Bacterial ,Microbiology (medical) ,Klebsiella ,Sequence analysis ,Klebsiella pneumoniae ,Molecular Sequence Data ,Microbiology ,RNA, Transfer ,Klebsiella terrigena ,23S ribosomal RNA ,Sequence Homology, Nucleic Acid ,DNA, Ribosomal Spacer ,Humans ,Internal transcribed spacer ,Ribosomal DNA ,Conserved Sequence ,Phylogeny ,Genetics ,Polymorphism, Genetic ,biology ,Bacteriology ,Klebsiella oxytoca ,Sequence Analysis, DNA ,biology.organism_classification ,Klebsiella Infections ,Genes, Bacterial - Abstract
The 16S-23S rRNA gene internal transcribed spacer (ITS) regions of Klebsiella spp., including Klebsiella pneumoniae subsp. pneumoniae, Klebsiella pneumoniae subsp. ozaenae, Klebsiella pneumoniae subsp. rhinoscleromatis, Klebsiella oxytoca, Klebsiella planticola, Klebsiella terrigena , and Klebsiella ornithinolytica , were characterized, and the feasibility of using ITS sequences to discriminate Klebsiella species and subspecies was explored. A total of 336 ITS sequences from 21 representative strains and 11 clinical isolates of Klebsiella were sequenced and analyzed. Three distinct ITS types—ITS none (without tRNA genes), ITS glu [with a tRNA Glu (UUC) gene], and ITS ile+ala [with tRNA Ile (GAU) and tRNA Ala (UGC) genes]—were detected in all species except for K. pneumoniae subsp. rhinoscleromatis , which has only ITS glu and ITS ile+ala . The presence of ITS none in Enterobacteriaceae had never been reported before. Both the length and the sequence of each ITS type are highly conserved within the species, with identity levels from 0.961 to 1.000 for ITS none , from 0.967 to 1.000 for ITS glu , and from 0.968 to 1.000 for ITS ile+ala . Interspecies sequence identities range from 0.775 to 0.989 for ITS none , from 0.798 to 0.997 for ITS glu , and from 0.712 to 0.985 for ITS ile+ala . Regions with significant interspecies variations but low intraspecies polymorphisms were identified; these may be targeted in the design of probes for the identification of Klebsiella to the species level. Phylogenetic analysis based on ITS regions reveals the relationships among Klebsiella species similarly to that based on 16S rRNA genes.
- Published
- 2008
7. Prenatal influenza vaccination rescues impairments of social behavior and lamination in a mouse model of autism
- Author
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Yingying Wu, Fangfang Qi, Dan Song, Zitian He, Zejie Zuo, Yunjie Yang, Qiongliang Liu, Saisai Hu, Xiao Wang, Xiaona Zheng, Junhua Yang, Qunfang Yuan, Juntao Zou, Kaihua Guo, and Zhibin Yao
- Subjects
Influenza vaccine ,Autism ,Cortical layers ,Neuronal differentiation ,Ikzf1 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Prenatal infection is a substantial risk factor for neurodevelopmental disorders such as autism in offspring. We have previously reported that influenza vaccination (VAC) during early pregnancy contributes to neurogenesis and behavioral function in offspring. Results Here, we probe the efficacy of VAC pretreatment on autism-like behaviors in a lipopolysaccharide (LPS)-induced maternal immune activation (MIA) mouse model. We show that VAC improves abnormal fetal brain cytoarchitecture and lamination, an effect associated with promotion of intermediate progenitor cell differentiation in MIA fetal brain. These beneficial effects are sufficient to prevent social deficits in adult MIA offspring. Furthermore, whole-genome analysis suggests a strong interaction between Ikzf1 (IKAROS family zinc-finger 1) and neuronal differentiation. Intriguingly, VAC rescues excessive microglial Ikzf1 expression and attenuates microglial inflammatory responses in the MIA fetal brain. Conclusions Our study implies that a preprocessed influenza vaccination prevents maternal bacterial infection from causing neocortical lamination impairments and autism-related behaviors in offspring.
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- 2018
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8. Immunization with Bacillus Calmette-Guérin (BCG) alleviates neuroinflammation and cognitive deficits in APP/PS1 mice via the recruitment of inflammation-resolving monocytes to the brain
- Author
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Zejie Zuo, Fangfang Qi, Junhua Yang, Xiao Wang, Yingying Wu, Yaru Wen, Qunfang Yuan, Juntao Zou, Kaihua Guo, and Zhi Bin Yao
- Subjects
BCG ,Vaccination ,AD ,Monocytes ,IFN-γ ,Anti-inflammation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The immune system plays a crucial role in the progression of Alzheimer's disease (AD). Recently, immune-dependent cascade induced by systemic immune activation has been verified to play a beneficial role in AD mouse models. Here, we tested whether Bacillus Calmette-Guérin (BCG) immunization alters AD pathology and cognitive dysfunction in APP/PS1 AD mouse model, and with 4Aβ1-15 vaccination as positive control. It was found that BCG treatment reversed the cognitive decline to the extent observed in 4Aβ1-15 group, but did not reduce the β-amyloid (Aβ) burden in the brain. Then, we demonstrated the enhanced recruitment of inflammation-resolving monocytes across the choroid plexus and perivascular spaces to cerebral sites of plaque pathology in APP/PS1 mice immunized with BCG. Furthermore, elevated splenocyte Foxp3+ regulatory T cell levels in the control APP/PS1 mice were down-regulated back to the wild-type (WT) levels by BCG treatment but not 4Aβ1-15 vaccination. In addition, BCG treatment induced the production of more circulating interferon (IFN)-γ than the controls and 4Aβ1-15 vaccination. Though the similar reductions in brain levels of pro-inflammatory cytokines were observed in the BCG and 4Aβ1-15 groups compared to the controls, only BCG had the great effect in upregulating cerebral anti-inflammatory cytokine levels as well as elevating the expression of neurotrophic factors in the brain of APP/PS1 mice. Thus, it is suggested that BCG exerts a beneficial immunomodulatory effect in APP/PS1 mice through mitigation of systemic immune suppression, induction of IFN-γ response and alleviation of the neuroinflammatory response.
- Published
- 2017
- Full Text
- View/download PDF
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