45 results on '"Sarah Stewart Johnson"'
Search Results
2. Survival strategies of an anoxic microbial ecosystem in Lake Untersee, a potential analog for Enceladus
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Nicole Yasmin Wagner, Dale T. Andersen, Aria S. Hahn, and Sarah Stewart Johnson
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Medicine ,Science - Abstract
Abstract Lake Untersee located in Eastern Antarctica, is a perennially ice-covered lake. At the bottom of its southern basin lies 20 m of anoxic, methane rich, stratified water, making it a good analog for Enceladus, a moon of Saturn. Here we present the first metagenomic study of this basin and detail the community composition and functional potential of the microbial communities at 92 m, 99 m depths and within the anoxic sediment. A diverse and well-populated microbial community was found, presenting the potential for Enceladus to have a diverse and abundant community. We also explored methanogenesis, sulfur metabolism, and nitrogen metabolism, given the potential presence of these compounds on Enceladus. We found an abundance of these pathways offering a variety of metabolic strategies. Additionally, the extreme conditions of the anoxic basin make it optimal for testing spaceflight technology and life detection methods for future Enceladus exploration.
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- 2022
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3. Planetary Mass Spectrometry for Agnostic Life Detection in the Solar System
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Luoth Chou, Paul Mahaffy, Melissa Trainer, Jennifer Eigenbrode, Ricardo Arevalo, William Brinckerhoff, Stephanie Getty, Natalie Grefenstette, Victoria Da Poian, G. Matthew Fricke, Christopher P. Kempes, Jeffrey Marlow, Barbara Sherwood Lollar, Heather Graham, and Sarah Stewart Johnson
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mass spectrometry ,life detection ,agnostic biosignatures ,planetary exploration ,astrobiology ,Astronomy ,QB1-991 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
For the past fifty years of space exploration, mass spectrometry has provided unique chemical and physical insights on the characteristics of other planetary bodies in the Solar System. A variety of mass spectrometer types, including magnetic sector, quadrupole, time-of-flight, and ion trap, have and will continue to deepen our understanding of the formation and evolution of exploration targets like the surfaces and atmospheres of planets and their moons. An important impetus for the continuing exploration of Mars, Europa, Enceladus, Titan, and Venus involves assessing the habitability of solar system bodies and, ultimately, the search for life—a monumental effort that can be advanced by mass spectrometry. Modern flight-capable mass spectrometers, in combination with various sample processing, separation, and ionization techniques enable sensitive detection of chemical biosignatures. While our canonical knowledge of biosignatures is rooted in Terran-based examples, agnostic approaches in astrobiology can cast a wider net, to search for signs of life that may not be based on Terran-like biochemistry. Here, we delve into the search for extraterrestrial chemical and morphological biosignatures and examine several possible approaches to agnostic life detection using mass spectrometry. We discuss how future missions can help ensure that our search strategies are inclusive of unfamiliar life forms.
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- 2021
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4. Author Correction: Survival strategies of an anoxic microbial ecosystem in Lake Untersee, a potential analog for Enceladus
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Nicole Yasmin Wagner, Dale T. Andersen, Aria S. Hahn, and Sarah Stewart Johnson
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Medicine ,Science - Published
- 2022
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5. The Grayness of the Origin of Life
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Hillary H. Smith, Andrew S. Hyde, Danielle N. Simkus, Eric Libby, Sarah E. Maurer, Heather V. Graham, Christopher P. Kempes, Barbara Sherwood Lollar, Luoth Chou, Andrew D. Ellington, G. Matthew Fricke, Peter R. Girguis, Natalie M. Grefenstette, Chad I. Pozarycki, Christopher H. House, and Sarah Stewart Johnson
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origin of life ,prebiotic evolution ,meteoritic organics ,pre-RNAs ,metalloenzymes ,thioesters ,Science - Abstract
In the search for life beyond Earth, distinguishing the living from the non-living is paramount. However, this distinction is often elusive, as the origin of life is likely a stepwise evolutionary process, not a singular event. Regardless of the favored origin of life model, an inherent “grayness” blurs the theorized threshold defining life. Here, we explore the ambiguities between the biotic and the abiotic at the origin of life. The role of grayness extends into later transitions as well. By recognizing the limitations posed by grayness, life detection researchers will be better able to develop methods sensitive to prebiotic chemical systems and life with alternative biochemistries.
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- 2021
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6. Antarctic Relic Microbial Mat Community Revealed by Metagenomics and Metatranscriptomics
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Elena Zaikova, David S. Goerlitz, Scott W. Tighe, Nicole Y. Wagner, Yu Bai, Brenda L. Hall, Julie G. Bevilacqua, Margaret M. Weng, Maya D. Samuels-Fair, and Sarah Stewart Johnson
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Antarctica ,cell survival ,DNA repair ,dormancy ,extremophiles ,metagenomics ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
Buried upslope from the modern lakes in the McMurdo Dry Valleys of Antarctica are relict lake deposits embedded in valley walls. Within these relict deposits, ancient microbial mats, or paleomats, have been preserved under extremely arid and cold conditions since the receding of larger paleolakes thousands of years ago, and now serve as a sheltered niche for microbes in a highly challenging oligotrophic environment. To explore whether paleomats could be repositories for ancient lake cells or were later colonized by soil microbes, determine what types of metabolic pathways might be present, analyze potential gene expression, and explore whether the cells are in a vegetative or dormant state, we collected paleomat samples from ancient lake facies on the northern slopes of Lake Vanda in Wright Valley in December 2016. Using a gentle lysis technique optimized to preserve longer molecules, combined with a polyenzymatic treatment to maximize yields from different cell types, we isolated high-molecular weight DNA and RNA from ancient paleomat samples. Community composition analysis suggests that the paleomat community may retain a population of indigenous mat cells that may flourish once more favorable conditions are met. In addition to harboring a diverse microbial community, paleomats appear to host heterotrophs in surrounding soils utilizing the deposits as a carbon source. Whole genome long-read PacBio sequencing of native DNA and Illumina metagenomic sequencing of size-sorted DNA (>2,500 nt) indicated possible cell viability, with mat community composed of bacterial taxa. Metagenome assemblies identified genes with predicted roles in nitrogen cycling and complex carbohydrate degradation, and we identified key metabolic pathways such as stress response, DNA repair, and sporulation. Metatranscriptomic data revealed that the most abundant transcripts code for products involved in genetic information processing pathways, particularly translation, DNA replication, and DNA repair. Our results lend new insight into the functional ecology of paleomat deposits, with implications for our understanding of cell biology, Antarctic microbiology and biogeography, and the limits of life in extremely harsh environments.
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- 2019
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7. Insights from the metagenome of an acid salt lake: the role of biology in an extreme depositional environment.
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Sarah Stewart Johnson, Marc Gerard Chevrette, Bethany L Ehlmann, and Kathleen Counter Benison
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Medicine ,Science - Abstract
The extremely acidic brine lakes of the Yilgarn Craton of Western Australia are home to some of the most biologically challenging waters on Earth. In this study, we employed metagenomic shotgun sequencing to generate a microbial profile of the depositional environment associated with the sulfur-rich sediments of one such lake. Of the 1.5 M high-quality reads generated, 0.25 M were mapped to protein features, which in turn provide new insights into the metabolic function of this community. In particular, 45 diverse genes associated with sulfur metabolism were identified, the majority of which were linked to either the conversion of sulfate to adenylylsulfate and the subsequent production of sulfide from sulfite or the oxidation of sulfide, elemental sulfur, and thiosulfate via the sulfur oxidation (Sox) system. This is the first metagenomic study of an acidic, hypersaline depositional environment, and we present evidence for a surprisingly high level of microbial diversity. Our findings also illuminate the possibility that we may be meaningfully underestimating the effects of biology on the chemistry of these sulfur-rich sediments, thereby influencing our understanding of past geobiological conditions that may have been present on Earth as well as early Mars.
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- 2015
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8. Draft Genome Sequence from a Putative New Genus and Species in the Family Methanoregulaceae Isolated from the Anoxic Basin of Lake Untersee in East Antarctica
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Nicole Y. Wagner, Aria S. Hahn, Dale Andersen, Mary Beth Wilhelm, Connor Morgan-Lang, Mia Vanderwilt, and Sarah Stewart Johnson
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- 2019
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9. Radiation Tolerance of Nanopore Sequencing Technology for Life Detection on Mars and Europa
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Mark A. Sutton, Aaron S. Burton, Elena Zaikova, Ryan E. Sutton, William B. Brinckerhoff, Julie G. Bevilacqua, Margaret M. Weng, Michael J. Mumma, and Sarah Stewart Johnson
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Exobiology - Abstract
The search for life beyond Earth is a key motivator in space exploration. Informational polymers, like DNA and RNA, are key biosignatures for life as we know it. The MinION is a miniature DNA sequencer based on versatile nanopore technology that could be implemented on future planetary missions. A critical unanswered question is whether the MinION and its protein-based nanopores can withstand increased radiation exposure outside Earth’s shielding magnetic field. We evaluated the effects of ionizing radiation on the MinION platform – including flow cells, reagents, and hardware – and discovered limited performance loss when exposed to ionizing doses comparable to a mission to Mars. Targets with harsher radiation environments, like Europa, would require improved radiation resistance via additional shielding or design refinements.
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- 2019
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10. Influence of Calcium Perchlorate on the Search for Organics on Mars with Tetramethylammonium Hydroxide Thermochemolysis
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Yuanyuan He, Pin Lu, Paul R. Mahaffy, Charles Malespin, Melissa Guzman, Cyril Szopa, Amy J. Williams, Samuel Teinturier, Maeva Millan, Sarah Stewart Johnson, Michel Cabane, Hervé Cottin, Jennifer C. Stern, Jennifer L. Eigenbrode, Rafael Navarro-González, Vincent Butin, Fabien Stalport, Naila Chaouche-Mechidal, Caroline Freissinet, Arnaud Buch, D. Coscia, Daniel P. Glavin, Jamila El Bekri, Jean-Yves Bonnet, Laboratoire de Génie des Procédés et Matériaux (LGPM), CentraleSupélec-Université Paris-Saclay, PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), University of Florida [Gainesville] (UF), NASA Goddard Space Flight Center (GSFC), Georgetown University [Washington] (GU), GSFC Solar System Exploration Division, Telespazio France, Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA (UMR_7583)), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Instituto de Ciencias Nucleares [Mexico], Universidad Nacional Autónoma de México = National Autonomous University of Mexico (UNAM), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Paris (UP)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), and Universidad Nacional Autónoma de México (UNAM)
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chemistry.chemical_classification ,Tetramethylammonium hydroxide ,Perchlorates ,Extraterrestrial Environment ,Inorganic chemistry ,Pyrolysis gc ms ,Mars ,Calcium perchlorate ,Mars Exploration Program ,010402 general chemistry ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,Gas Chromatography-Mass Spectrometry ,0104 chemical sciences ,Quaternary Ammonium Compounds ,chemistry.chemical_compound ,chemistry ,[SDU]Sciences of the Universe [physics] ,13. Climate action ,Space and Planetary Science ,0103 physical sciences ,Sample Analysis at Mars ,Calcium ,Organic matter ,010303 astronomy & astrophysics - Abstract
International audience; The Mars Organic Molecule Analyzer (MOMA) and Sample Analysis at Mars (SAM) instruments onboard the Exomars 2022 and Mars Science Laboratory rovers, respectively, are capable of organic matter detection and differentiating potentially biogenic from abiotic organics in martian samples. To identify organics, both these instruments utilize pyrolysis–gas chromatography coupled to mass spectrometry, and the thermochemolysis agent tetramethylammonium hydroxide (TMAH) is also used to increase organic volatility. However, the reactivity and efficiency of TMAH thermochemolysis are affected by the presence of calcium perchlorate on the martian surface. In this study, we determined the products of TMAH pyrolysis in the presence and absence of calcium perchlorate at different heating rates (flash pyrolysis and SAM-like ramp pyrolysis with a 35°C·min−1 heating rate). The decomposition mechanism of TMAH pyrolysis in the presence of calcium perchlorate was studied by using stepped pyrolysis. Moreover, the effect of calcium perchlorate (at Mars-relevant concentrations) on the recovery rate of fatty acids with TMAH thermochemolysis was studied. Results demonstrate that flash pyrolysis yields more diversity and greater abundances of TMAH thermochemolysis products than does the SAM-like ramp pyrolysis method. There is no obvious effect of calcium perchlorate on TMAH degradation when the [ClO4−] is lower than 10 weight percent (wt %). Most importantly, the presence of calcium perchlorate does not significantly impact the recovery rate of fatty acids with TMAH thermochemolysis under laboratory conditions, which is promising for the detection of fatty acids via TMAH thermochemolysis with the SAM and MOMA instruments on Mars.
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- 2021
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11. Draft Genome Sequence from a Putative New Genus and Species in the Family M1A02 within the Phylum Planctomycetes , Isolated from Benthic Pinnacle Mats in Lake Untersee, Antarctica
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Nicole Yasmin Wagner, Dale T. Andersen, Aria S. Hahn, Ryan McLaughlin, and Sarah Stewart Johnson
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Immunology and Microbiology (miscellaneous) ,Genetics ,Molecular Biology - Abstract
Here, we report the draft genome sequence for a new putative genus and species in the family M1A02 within the order Phycisphaerales . Isolated from the metagenome of a benthic pinnacle-shaped mat in the Antarctic Lake Untersee, the members of this family have been found in biofilms and freshwater environments.
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- 2022
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12. Testing for Negative Interference from Beta-Core Fragment hCG in Urine
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David G Grenache, Huei-Ting Yang, Sarah Stewart Johnson, and Lorrae Marriott
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Core fragment ,Chemistry ,Humans ,Chorionic Gonadotropin, beta Subunit, Human ,General Medicine ,Urine ,Interference (genetic) ,Beta (finance) ,Molecular biology ,Peptide Fragments - Published
- 2021
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13. Survival strategies of an anoxic microbial ecosystem in Lake Untersee, a potential analog for Enceladus
- Author
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Nicole Yasmin, Wagner, Dale T, Andersen, Aria S, Hahn, and Sarah Stewart, Johnson
- Subjects
Lakes ,Saturn ,Water ,Methane ,Ecosystem - Abstract
Lake Untersee located in Eastern Antarctica, is a perennially ice-covered lake. At the bottom of its southern basin lies 20 m of anoxic, methane rich, stratified water, making it a good analog for Enceladus, a moon of Saturn. Here we present the first metagenomic study of this basin and detail the community composition and functional potential of the microbial communities at 92 m, 99 m depths and within the anoxic sediment. A diverse and well-populated microbial community was found, presenting the potential for Enceladus to have a diverse and abundant community. We also explored methanogenesis, sulfur metabolism, and nitrogen metabolism, given the potential presence of these compounds on Enceladus. We found an abundance of these pathways offering a variety of metabolic strategies. Additionally, the extreme conditions of the anoxic basin make it optimal for testing spaceflight technology and life detection methods for future Enceladus exploration.
- Published
- 2021
14. Period tracker applications: What menstrual cycle information are they giving women?
- Author
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Sarah Stewart Johnson, Lorrae Marriott, Joyce C. Harper, and Lauren Worsfold
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Ovulation ,medicine.medical_specialty ,business.industry ,media_common.quotation_subject ,Track (disk drive) ,General Medicine ,Physical medicine and rehabilitation ,Fertility ,periods ,period tracker app ,Medicine ,Humans ,Female ,Original Research Article ,business ,Menstrual cycle ,Period (music) ,fertile window ,Biomarkers ,Menstrual Cycle ,media_common ,menstrual cycle tracker - Abstract
Background: Period tracking applications (apps) allow women to track their menstrual cycles and receive a prediction for their period dates. The majority of apps also provide predictions of ovulation day and the fertile window. Research indicates apps are basing predictions on assuming women undergo a textbook 28-day cycle with ovulation occurring on day 14 and a fertile window between days 10 and 16. Objective: To determine how the information period tracker apps give women on their period dates, ovulation day and fertile window compares to expected results from big data. Methods: Five women’s profiles for 6 menstrual cycles were created and entered into 10 apps. Cycle length and ovulation day for the sixth cycle were Woman 1—Constant 28 day cycle length, ovulation day 16; Woman 2—Average 23 day cycle length, ovulation day 13; Woman 3—Average 28 day cycle length, ovulation day 17; Woman 4—Average 33 day cycle length, ovulation day 20; and Woman 5—Irregular, average 31 day cycle length, ovulation day 14. Results: The 10 period tracker apps examined gave conflicting information on period dates, ovulation day and the fertile window. For cycle length, the apps all predicted woman 1’s cycles correctly but for women 2–5, the apps predicted 0 to 8 days shorter or longer than expected. For day of ovulation, for women 1–4, of the 36 predictions, 3 (8%) were exactly correct, 9 predicted 1 day too early (25%) and 67% of predictions were 2–9 days early. For woman 5, most of the apps predicted a later day of ovulation. Conclusion: Period tracker apps should ensure they only give women accurate information, especially for the day of ovulation and the fertile window which can only be predicted if using a marker of ovulation, such as basal body temperature, ovulation sticks or cervical mucus.
- Published
- 2021
15. Performance of the SAM gas chromatographic columns under simulated flight operating conditions for the analysis of chlorohydrocarbons on Mars
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Cyril Szopa, Sarah Stewart Johnson, Maeva Millan, Samuel Teinturier, Paul R. Mahaffy, Michel Cabane, Arnaud Buch, Department of Biology [Washington], Georgetown University [Washington] (GU), NASA Goddard Space Flight Center (GSFC), PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Laboratoire de Génie des Procédés et Matériaux - EA 4038 (LGPM), and CentraleSupélec
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Chemical substance ,Extraterrestrial Environment ,Mars ,010402 general chemistry ,Mass spectrometry ,Life on Mars ,01 natural sciences ,Biochemistry ,Chlorinated hydrocarbons ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,Soil ,Hydrocarbons, Chlorinated ,Gas chromatography ,Chromatography ,Spectrometer ,Chemistry ,010401 analytical chemistry ,Organic Chemistry ,Sample Analysis at Mars ,General Medicine ,Mars Exploration Program ,Curiosity rover ,[SDU.ASTR.IM]Sciences of the Universe [physics]/Astrophysics [astro-ph]/Instrumentation and Methods for Astrophysic [astro-ph.IM] ,0104 chemical sciences ,13. Climate action ,Environmental Monitoring - Abstract
"Multi-column gas chromatography analysis of chlorohydrocarbons 1with the SAM experiment onboard NASA’s Mars Curiosity rover" est le titre provisoire de la publication.; International audience; The Sample Analysis at Mars (SAM) instrument is a gas chromatograph-mass spectrometer onboard the NASA Curiosity rover, currently operating on the surface of Mars. Organic compounds are of major importance with regard to questions of habitability and the potential presence of life on Mars, and one of the mission’s main objectives is to analyze the organic content of soil and rock samples. In SAM’s first chromatographic measurements, however, unexpected chlorine-bearing organic molecules were detected. These molecules have different origins but the presence of perchlorates and chlorates detected at the surface of Mars suggests that reactivity between organic molecules and thermal decomposition products from oxychlorines is one of the major sources of the chlorinated organic molecules. Here we perform a comprehensive and systematic study of the separation of volatile chlorohydrocarbons with the chromatographic columns used in the SAM instrument. Despite the constrained operating conditions of the flight instrument, we demonstrate that SAM’s capillary chromatographic columns allow for effective separation and identification of a wide range of chlorine-bearing species. We also show that instrumental limitations prevent the detection of certain molecules, obscuring our ability to make definitive conclusions about the origin of these organic materials.
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- 2019
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16. Towards a more universal life detection strategy
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Christopher P. Kempes, Leroy Cronin, Andrew D. Ellington, Eric V. Anslyn, Eric Libby, Heather Graham, Paul R. Mahaffy, Sarah Stewart Johnson, Natalie Grefenstette, Luoth Chou, William Brinkerhoff, Tori M. Hoehler, Peter R. Girguis, Jamie E. Elsila, and Barbara Sherwood Lollar
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Focus (computing) ,White paper ,Computer science ,Data science ,Life detection - Abstract
This white paper argues for a more universal approach to life detection. We recommend that life detection missions focus on looking for signatures of life deemed to be shared by all possible types of life, independent of their specific biochemistries, rather than looking for signatures of life that could arguably be specific to Terran-life.
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- 2021
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17. Summary of the Mars Science Goals, Objectives, Investigations, and Priorities
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David Brain, Paul B. Niles, Michelle A. Rucker, Don Banfield, Sarah Stewart Johnson, Robin Wordsworth, Rebecca M. E. Williams, Kevin Watts, Alfonso F. Davila, Briony Horgan, and Jennifer C. Stern
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Engineering ,Management science ,business.industry ,Mars Exploration Program ,business ,Goals objectives - Published
- 2021
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18. Agnostic Biosignature Exploration at Europa through Plume Sampling
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Bill Farrell, Sarah Stewart Johnson, Alexis S. Templeton, J. L. Eigenbrode, William B. Sparks, Margaret Weng, William B. Brinckerhoff, John Grunsfeld, Tori M. Hoehler, Roger E. Summons, Alison E. Murray, Kathleen L. Craft, Ricardo Arevalo, Morgan L. Cable, Mehdi Benna, Paul R. Mahaffy, and James B. Garvin
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Biosignature ,Sampling (statistics) ,Environmental science ,Astrobiology ,Plume - Published
- 2021
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19. Enabling Progress Towards Life Detection on NASA Missions
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Britney E. Schmidt, Jeff S. Bowman, Taylor Plattner, David E. Stillman, Shashan Yu, F. E. Bryson, Heather Graham, Laura M. Barge, Sarah Stewart Johnson, Dan Jones, Richard A. Mathies, C. Chivers, Beth N. Orcutt, Alexandra Pontefract, A. A. Pavlov, Christine M. Foreman, Kristin D. Bergmann, Sanjoy M. Som, Amanda M. Stockton, Brook L. Nunn, Gordon D. Love, Justin Lawrence, A. D. Mullen, Everett L. Shock, Fabien Kenig, Nathalie A. Cabrol, Roland Hatzenpichler, Ashley Hanna, Jacob Buffo, Tori M. Hoehler, Wesley D Swingley, Pablo Sobron, and E. M. Spiers
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Engineering ,business.industry ,Systems engineering ,business ,Life detection - Published
- 2021
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20. Deep Trek: Mission Concepts for Exploring Subsurface Habitability & Life on Mars — A Window into Subsurface Life in the Solar System
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Daniel P. Glavin, Kristopher Sherrill, Lewis M. Ward, Tomohiro Usui, Jennifer G. Blank, Atsuko Kobayashi, Matthias Grott, Janice L. Bishop, Rachel L. Harris, Charles D. Edwards, Orkun Temel, Alexis S. Templeton, Travis Gabriel, Larry Matthies, Haley M. Sapers, Vincent Chevrier, Eloise Marteau, Ceth W. Parker, Sarah Stewart Johnson, Patrick McGarey, Vlada Stamenkovic, Ana-Catalina Plesa, Joseph R. Michalski, Ryan Woolley, Seth Krieger, Michael Mischna, John D. Rummel, Sharon Kedar, Devanshu Jha, Sushil K. Atreya, Heather Graham, Roberto Orosei, Brian D. Wade, Louis Giersch, Matthew O. Schrenk, Alberto G. Fairén, Dirk Schulze-Makuch, Ákos Kereszturi, Beth N. Orcutt, Doris Breuer, Kalind Carpenter, Snehamoy Chatterjee, Velibor Cormarkovic, Cara Magnabosco, Anthony Freeman, Scott Howe, Donald Ruffatto, Oliver Warr, Robert E. Grimm, Kris Zacny, Shino Suzuki, Hermes Hernan Bolivar-Torres, Penelope J. Boston, John Hernlund, Jeffrey J. McDonnell, Barbara Sherwood-Lollar, Stewart Gault, Joseph L. Kirschvink, Yasuhito Sekine, Jennifer C. McIntosh, Morgan L. Cable, Cedric Schmelzbach, Renyu Hu, Fumio Inagaki, Stalport Fabien, Nigel Smith, John F. Mustard, William B. Brinckerhoff, Nathan Barba, Ali-akbar Agha-mohammadi, Michael Malaska, Mariko Burgin, Varun Paul, Essam Heggy, J. D. Tarnas, Jorge Andres Torres Celis, Katarina Miljković, Bernadett Pál, Woodward W. Fischer, A. F. C. Haldemann, Kennda Lynch, Elodie Gloesener, Edgard G. Rivera-Valentín, J. Andy Spry, Charles S. Cockell, Magdalena R. Osburn, Marc A. Hesse, Luther W. Beegle, Tilman Spohn, Tullis C. Onstott, M. S. Bell, Kyle Uckert, María Paz Zorzano, S. Shkolyar, David A. Paige, Ryan Timoney, Raju Manthena, Giuseppe Etiope, Chris Webster, Brian H. Wilcox, Thomas L. Kieft, and James W. Head
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Solar System ,Habitability ,Window (computing) ,Life on Mars ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Jet propulsion ,Geology ,Astrobiology - Abstract
Charles D. Edwards (Jet Propulsion Laboratory, California Institute of Technology). Co-Authors: 1. Vlada Stamenkovic Jet Propulsion Laboratory, California Institute of Technology; 2. Penelope Boston NASA Ames; 3. Kennda Lynch LPI/USRA … et al.
- Published
- 2021
21. Deep Trek: Science of Subsurface Habitability & Life on Mars
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Daniel P. Glavin, Katarina Miljković, Joseph R. Michalski, Kristopher Sherrill, Heather Graham, Seth Krieger, Brian D. Wade, Charles D. Edwards, Louis Giersch, Beth N. Orcutt, Doris Breuer, William B. Brinckerhoff, J. Andy Spry, Thomas L. Kieft, Kalind Carpenter, Penelope J. Boston, Magdalena R. Osburn, Tilman Spohn, Atsuko Kobayashi, Fumio Inagaki, Matthew O. Schrenk, Jennifer G. Blank, Ákos Kereszturi, John D. Rummel, Hermes Hernan Bolivar-Torres, Christopher R. Webster, Shino Suzuki, John Hernlund, Jennifer C. McIntosh, Devanshu Jha, M. S. Bell, Velibor Cormarkovic, Ryan Timoney, Janice L. Bishop, Stalport Fabien, Michael A. Mischna, Robert E. Grimm, Lewis M. Ward, Matthias Grott, Kennda Lynch, Kris Zacny, Elodie Gloesener, Stewart Gault, Raju Manthena, Vincent Chevrier, Anthony Freeman, Vlada Stamenkovic, Giuseppe Etiope, Tullis C. Onstott, Yasuhito Sekine, Nathan Barba, Ceth W. Parker, Alexis S. Templeton, Larry Matthies, Varun Paul, Marc A. Hesse, John F. Mustard, Snehamoy Chatterjee, Cara Magnabosco, Roberto Orosei, Donald Ruffatto, María Paz Zorzano, Haley M. Sapers, A. F. C. Haldemann, Nigel Smith, Brian H. Wilcox, Kyle Uckert, Jorge Andres Torres Celis, S. Shkolyar, Sushil K. Atreya, Luther W. Beegle, Joseph L. Kirschvink, Jeffrey J. McDonnell, Eloise Marteau, Essam Heggy, J. D. Tarnas, Alberto G. Fairén, Morgan L. Cable, James W. Head, David A. Paige, Sharon Kedar, Renyu Hu, Woodward W. Fischer, Orkun Temel, Dirk Schulze-Makuch, Scott Howe, Rachel L. Harris, Tomohiro Usui, Travis Gabriel, Ana-Catalina Plesa, Ryan Woolley, Barbara Sherwood-Lollar, Oliver Warr, Edgard G. Rivera-Valentín, Charles S. Cockell, Bernadett Pál, Cedric Schmelzbach, Sarah Stewart Johnson, Ali-akbar Agha-mohammadi, Michael Malaska, Mariko Burgin, and Patrick McGarey
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Habitability ,Life on Mars ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Geology ,Astrobiology - Abstract
Bulletin of the AAS, 53 (4)
- Published
- 2021
22. Constraints on the Mineralogy and Geochemistry of Vera Rubin Ridge, Gale Crater, Mars, From Mars Science Laboratory Sample Analysis at Mars Evolved Gas Analyses
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Heather B. Franz, Amy McAdam, J. M. T. Lewis, G. M. Wong, Christopher H. House, Slavka Andrejkovičová, Douglas W. Ming, Sarah Stewart Johnson, Brad Sutter, Jennifer C. Stern, Jennifer L. Eigenbrode, J. V. Clark, Cherie N. Achilles, C. A. Knudson, Lucy M. Thompson, Richard V. Morris, Amy J. Williams, Elizabeth B. Rampe, Paul R. Mahaffy, Rafael Navarro-González, Thomas F. Bristow, Ralf Gellert, and P. Douglas Archer
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Geophysics ,Space and Planetary Science ,Geochemistry and Petrology ,Sample Analysis at Mars ,Earth and Planetary Sciences (miscellaneous) ,Ridge (meteorology) ,Geochemistry ,Gale crater ,Mars Exploration Program ,Geology - Published
- 2020
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23. Androgen receptor activity promotes resistance to BRAF-targeted melanoma therapy
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Zachary Kulstad, Mikhila Mahendra, Ningping Feng, Jennifer A. Wargo, Rodabe N. Amaria, Scott E. Woodman, Hussein Tawbi, Elizabeth M. Burton, Abdul Wadud Khan, Timothy P. Heffernan, Alexander J. Lazar, Lauren E. Haydu, Sarah Stewart Johnson, Courtney W. Hudgens, Patrick Hwu, Khalida Wani, Michael A. White, Michael Davies, Miles C. Andrews, Anthony Lucci, XioYan Ma, Gabriel Ologun, Mark Titus, Christopher J. Logothetis, Joseph R. Marszalek, Golnaz Morad, Jeffrey J. Kovacs, Alex P. Cogdill, Emily Z. Keung, Jeffrey E. Lee, Haifeng Zhu, Michael T. Tetzlaff, Guang Gao, Jeffrey E. Gershenwald, Peter A. Prieto, Jennifer L. McQuade, Zachary A. Cooper, Christopher P. Vellano, Sapna Pradyuman Patel, Lorenzo Federico, Rohit Thakur, Swathi Arur, Michael Peoples, Merrick I. Ross, Joseph R. Daniele, and Beth A. Helmink
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business.industry ,Melanoma ,Cancer research ,Medicine ,business ,medicine.disease ,Androgen receptor activity - Abstract
Treatment with molecularly-targeted therapy has revolutionized cancer care, including BRAF/MEK-targeted melanoma therapy. However responses are heterogenous and frequently not long-lasting. Novel strategies to target resistance are needed. We studied a cohort of patients with resectable metastatic melanoma treated with neoadjuvant BRAF/MEK-targeted therapy (n=52) and noted a strong sexual dimorphism in response to treatment, with female patients demonstrating significantly higher rates of a major pathologic response (MPR) (p=0.0001). RNA sequencing of tumors demonstrated enrichment of androgen-related genes in those failing to achieve MPR. Pre-clinical studies validated these findings, with significantly increased tumor growth in male vs female mice treated with BRAF/MEK inhibitors (BRAF/MEKi) (p=0.0005). Androgen receptor (AR) expression was upregulated in tumors of BRAF/MEKi-treated mice, and modulation of AR signaling via AR-blockade or castration was associated with significantly slower tumor growth (p=0.0001 and p=0.00004, respectively). Together, these results have important implications in the context of treatment with BRAF/MEKi-targeted therapy.
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- 2020
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24. Evidence for a diagenetic origin of vera rubin ridge, gale crater, Mars: summary and synthesis of curiosity's exploration campaign
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Craig Hardgrove, Kirsten L. Siebach, John P. Grotzinger, Christopher S. Edwards, Alexander B. Bryk, Susanne P. Schwenzer, Sarah Stewart Johnson, William E. Dietrich, Lauren A. Edgar, Sunetra Gupta, Steven G. Banham, Jeffrey G. Catalano, S. Czarnecki, K. M. Stack, Ashwin R. Vasavada, R. V. Morris, Danika Wellington, John Bridges, Christopher H. House, Kristen A. Bennett, S. M. R. Turner, David M. Rubin, Jonas L'Haridon, Jeffrey R. Johnson, Roger C. Wiens, Valerie Fox, S. Jacob, Raymond E. Arvidson, Amy J. Williams, Vivian Z. Sun, Christopher M. Fedo, Jens Frydenvang, Travis Gabriel, Briony Horgan, Woodward W. Fischer, E. B. Rampe, Abigail A. Fraeman, Lucy M. Thompson, N. Mangold, G. M. Wong, Mark R. Salvatore, Nathaniel Stein, G. David, Science and Technology Facilities Council (STFC), UK Space Agency, Jet Propulsion Laboratory (JPL), NASA-California Institute of Technology (CALTECH), Laboratoire de Planétologie et Géodynamique [UMR 6112] (LPG), Université d'Angers (UA)-Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), and Université de Nantes (UN)-Université de Nantes (UN)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
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Geochemistry & Geophysics ,010504 meteorology & atmospheric sciences ,Outcrop ,Lacustrine ,Geochemistry ,[SDU.ASTR.EP]Sciences of the Universe [physics]/Astrophysics [astro-ph]/Earth and Planetary Astrophysics [astro-ph.EP] ,Mars ,Hematite ,FLUID-FLOW ,Geologic record ,01 natural sciences ,Diagenesis ,Geochemistry and Petrology ,0201 Astronomical and Space Sciences ,Earth and Planetary Sciences (miscellaneous) ,0402 Geochemistry ,CHEMCAM INSTRUMENT SUITE ,0105 earth and related environmental sciences ,geography ,geography.geographical_feature_category ,Spectral signature ,Science & Technology ,SEDIMENTARY-ROCKS ,MOUNT SHARP ,Bedrock ,DYNAMIC ALBEDO ,Gale crater ,Mars Exploration Program ,MURRAY FORMATION ,15. Life on land ,ATOM EXCHANGE ,Geophysics ,Curiosity ,0403 Geology ,Space and Planetary Science ,visual_art ,Physical Sciences ,visual_art.visual_art_medium ,PAHRUMP HILLS ,(U-TH)/HE DATES ,Geology - Abstract
This paper provides an overview of the Curiosity rover's exploration at Vera Rubin ridge and summarizes the science results. Vera Rubin ridge (VRR) is a distinct geomorphic feature on lower Aeolis Mons (informally known as Mt. Sharp) that was identified in orbital data based on its distinct texture, topographic expression, and association with a hematite spectral signature. Curiosity conducted extensive remote sensing observations, acquired data on dozens of contact science targets, and drilled three outcrop samples from the ridge, as well as one outcrop sample immediately below the ridge. Our observations indicate that strata composing VRR were deposited in a predominantly lacustrine setting and are part of the Murray formation. The rocks within the ridge are chemically in family with underlying Murray formation strata. Red hematite is dispersed throughout much of the VRR bedrock, and this is the source of the orbital spectral detection. Gray hematite is also present in isolated, gray‐colored patches concentrated towards the upper elevations of VRR, and these gray patches also contain small, dark Fe‐rich nodules. We propose that VRR formed when diagenetic event(s) preferentially hardened rocks, which were subsequently eroded into a ridge by wind. Diagenesis also led to enhanced crystallization and/or cementation that deepened the ferric‐related spectral absorptions on the ridge, which helped make them readily distinguishable from orbit. Results add to existing evidence of protracted aqueous environments at Gale crater and give new insight into how diagenesis shaped Mars’ rock record.
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- 2020
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25. Influence of Calcium Perchlorate on Organics Under SAM‐Like Pyrolysis Conditions: Constraints on the Nature of Martian Organics
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Roger E. Summons, Cyril Szopa, Paul R. Mahaffy, Maeva Millan, Sarah Stewart Johnson, Rafael Navarro-González, Arnaud Buch, PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Department of Biology [Washington], Georgetown University [Washington] (GU), NASA Goddard Space Flight Center (GSFC), Laboratoire de Génie des Procédés et Matériaux (LGPM), CentraleSupélec-Université Paris-Saclay, Department of Earth, Atmospheric and Planetary Sciences [MIT, Cambridge] (EAPS), Massachusetts Institute of Technology (MIT), and Universidad Nacional Autónoma de México (UNAM)
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Martian ,chemistry.chemical_classification ,010504 meteorology & atmospheric sciences ,Chemistry ,Calcium perchlorate ,Mars Exploration Program ,01 natural sciences ,Regolith ,chemistry.chemical_compound ,Geophysics ,[SDU]Sciences of the Universe [physics] ,13. Climate action ,Space and Planetary Science ,Geochemistry and Petrology ,Environmental chemistry ,Sample Analysis at Mars ,Earth and Planetary Sciences (miscellaneous) ,Molecule ,Organic matter ,Pyrolysis ,0105 earth and related environmental sciences - Abstract
International audience; Most of the organics detected on Mars so far are aliphatic and aromatic organo‐chlorine compounds. The smallest were first identified by the thermal treatment of the solid samples by Viking in 1976, although at the time, they were attributed to contamination. Since 2012, a larger variety of structures have been identified by the Sample Analysis at Mars (SAM) experiment aboard the Curiosity rover. Evidence suggests that the chlorohydrocarbons formed during pyrolysis of sedimentary materials. Laboratory experiments show that heating of samples containing oxychlorines, such as chlorates (ClO3‐) and perchlorates (ClO4‐), along with organic matter present at Mars’ surface is the logical source of these compounds. Nevertheless, this discovery of indigenous organic matter in the Mars regolith raises important questions: How do the oxychlorines influence the pyrolysis of organics? What are the organics precursors of the organo‐chlorinated molecules detected on Mars? Is there a way to identify the parent molecules in a sample after pyrolysis? This paper presents the results of systematic laboratory experiments of the products formed during the pyrolysis of organic compounds from three chemical families—polycyclic aromatic hydrocarbons (PAHs), amino acids and carboxylic acids—in presence of calcium perchlorates. Results show that the PAH parent molecules and most of the carboxylic acids are still detectable after pyrolysis in presence of calcium perchlorate and that the degradation and/or evolution of all parent molecules mostly depends on their chemical nature. In addition, we demonstrate that the chlorohydrocarbons detected on Mars by the SAM instrument could come from the three chemical families studied.
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- 2020
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26. Fingerprinting Non-Terran Biosignatures
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Heather Graham, Andrew D. Ellington, Sarah Stewart Johnson, Eric V. Anslyn, and Paul R. Mahaffy
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0301 basic medicine ,Extraterrestrial Environment ,Planets ,Computational biology ,Proximity ligation assay ,Biology ,01 natural sciences ,DNA sequencing ,Chemometrics ,03 medical and health sciences ,Life ,Exobiology ,0103 physical sciences ,010303 astronomy & astrophysics ,Life detection ,Research Articles ,Agnostic biosignatures ,DNA ,Sequence Analysis, DNA ,Astrobiology ,DNA Fingerprinting ,Agricultural and Biological Sciences (miscellaneous) ,030104 developmental biology ,Space and Planetary Science - Abstract
Most strategies for life detection rely upon finding features known to be associated with terran life, such as particular classes of molecules. But life may be vastly different on other planets and moons, particularly as we expand our efforts to explore ocean worlds like Europa and Enceladus. We propose a new concept for life detection that harnesses the power of DNA sequencing to yield intricate informatics fingerprints, even for life that is not nucleic acid-based. The concept is based on the fact that folded nucleic acid structures (aptamers) have been shown to be capable of binding a wide variety of compounds, whether inorganic, organic, or polymeric, and irrespective of being from a biotic or abiotic source. Each nucleic acid sequence can be thought of as a code, and a combination of codes as a "fingerprint." Over multiple analytes, the "fingerprint" of a non-terran sample can be analyzed by chemometric protocols to provide a classifier of molecular patterns and complexity. Ultimately the chemometric fingerprints of living systems, which may differ significantly from nonliving systems, could provide an empirical, agnostic means of detecting life. Because nucleic acids are exponentially amplified by the polymerase chain reaction, even very small input signals could be translated into a robust readable output. The derived sequences could be identified by a small, portable sequencing device or by capture and optical imaging on a DNA microarray. Without presupposing any particular molecular framework, this agnostic approach to life detection could be used from Mars to the far reaches of the Solar System, all within the framework of an instrument drawing little heat and power. Key Words: Agnostic biosignatures-Astrobiology-Chemometrics-DNA sequencing-Life detection-Proximity ligation assay. Astrobiology 18, 915-922.
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- 2018
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27. 838 The role of microbiota in metastatic brain tumors
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Matthew Lastrapes, Nadim J. Ajami, Jennifer A. Wargo, Matthew C. Wong, Golnaz Morad, and Sarah Stewart Johnson
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Pharmacology ,Cancer Research ,Oncology ,Immunology ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Molecular Medicine ,Immunology and Allergy ,RC254-282 - Abstract
BackgroundDespite the substantial advances in the treatment of systemic cancer, brain metastases are still responsible for significant morbidity and mortality, necessitating a better understanding of the mechanisms underlying this disease. Microbiota has emerged as a significant hallmark of cancer. Our group and others have demonstrated a prominent role for gut and intratumoral microbiota in tumorigenesis, tumor immunity, and response to treatment. However, the role of microbiota in brain metastasis is poorly understood. We hypothesize that distinct microbial communities can alter the immune microenvironment in the brain and modulate the different steps of brain metastasis formation.MethodsTo explore the role of microbiota in brain metastasis, we evaluated the gut and oral microbial signatures in brain metastasis patients through shotgun metagenomics sequencing. Furthermore, we conducted mechanistic in vivo studies in which the gut microbiota was depleted in conventionally raised mice using a broad-spectrum non-absorbable antibiotic regimen. Subsequently, melanoma tumor cells were injected intracranially to evaluate the effect of gut microbiota depletion and associated immune changes on tumor growth. Tumor growth was measured through in vivo bioluminescent imaging and histology. Peripheral and tumor immune profiling was conducted through flow cytometry and immunohistochemistry.ResultsOur clinical studies demonstrated the enrichment of distinct bacterial and viral taxa within the gut and oral microbiota in brain metastasis patients. Depletion of the gut microbiota in mice decreased tumor growth in the brain. Evaluation of the peripheral and tumor immune profiles suggested the underlying mechanisms to involve alterations in the circulating cytokine profiles and an increase in anti-tumor T cell activity.ConclusionsOur clinical studies suggest the association of distinct microbial communities with brain metastasis. Our pre-clinical findings demonstrate that the absence of gut microbiota can modulate the regulation of T cell activity to induce an anti-tumor response in the brain. Further studies, currently in progress, will determine the mechanistic role of dysbiotic microbiota and distinct microbial communities in this process.AcknowledgementsThis work was supported by the National Institute of Health (1F32CA260769-01).
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- 2021
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28. A COMPREHENSIVE APPROACH TO EXPLORING THE INTERPLAY OF MICROBES AND MINERALS IN LAVA TUBES
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Ricardo Arevalo, D. M. Bower, Maeva Millan, Maggie Weng, C. A. Knudson, Chloe Fishman, Jacob E. Bleacher, Cherie N. Achilles, Amy McAdam, Sarah Stewart Johnson, and Kelsey Young
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Lava ,Geochemistry ,Geology - Published
- 2020
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29. Role of the Tenax® adsorbent in the interpretation of the EGA and GC‐MS analyses performed with the Sample Analysis at Mars in Gale crater
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Caroline Freissinet, Roger E. Summons, D. Coscia, Rafael Navarro-González, Daniel P. Glavin, Sarah Stewart Johnson, Imene Belmahdi, Cyril Szopa, Charles Malespin, Michel Cabane, Jennifer C. Stern, Paul R. Mahaffy, Jean-Yves Bonnet, Samuel Teinturier, Jennifer L. Eigenbrode, Maeva Millan, Yuanyuan He, Arnaud Buch, Laboratoire de Génie des Procédés et Matériaux - EA 4038 (LGPM), CentraleSupélec, PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), NASA Goddard Space Flight Center (GSFC), Department of Earth, Atmospheric and Planetary Sciences [MIT, Cambridge] (EAPS), Massachusetts Institute of Technology (MIT), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Instituto de Ciencias Nucleares [Mexico], Universidad Nacional Autónoma de México (UNAM), and Georgetown University [Washington] (GU)
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010504 meteorology & atmospheric sciences ,Tenax ,Martian soil ,Mars Exploration Program ,01 natural sciences ,chemistry.chemical_compound ,Perchlorate ,Geophysics ,chemistry ,13. Climate action ,Space and Planetary Science ,Geochemistry and Petrology ,[SDU]Sciences of the Universe [physics] ,Reagent ,Environmental chemistry ,Sample Analysis at Mars ,Earth and Planetary Sciences (miscellaneous) ,Gas chromatography–mass spectrometry ,Derivatization ,0105 earth and related environmental sciences - Abstract
The Sample Analysis at Mars (SAM) experiment on the National Aeronautics and Space Administration Curiosity rover seeks evidence of organic compounds on the surface of Mars. Since the beginning of the mission, various organic molecules have been detected and identified. While several have been demonstrated to be indigenous to the Martian soil and rocks analyzed, others appear to have been produced from sources internal to the experiment. The objective of this study is to build an exhaustive molecular database to support the interpretation of SAM results by identifying all the chemical species produced from Tenax® adsorbents, by determining (1) the thermal degradation by‐products of Tenax®, (2) the effect of Tenax® conditioning on the formation of Tenax® by‐products, (3) the impact of MTBSTFA or a mixture of MTBSTFA and DMF on Tenax® decomposition, and (4) the reaction between Tenax® and calcium perchlorate. Our results indicate that the by‐products of the SAM trap are due to the impact of trap heating, the impact of the derivatization reagent (MTBSTFA) and the presence of perchlorate in Martian soil. Some of these by‐products are observed in the SAM gas chromatograph mass spectrometer data from Mars.
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- 2019
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30. You did not turn up… I did not realise I was invited…: understanding male attitudes towards engagement in fertility and reproductive health discussions
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Sarah Stewart Johnson, Bola Grace, Jill Shawe, and Judith Stephenson
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0301 basic medicine ,Gerontology ,family building ,preconception health psychosocial issues ,men’s health ,media_common.quotation_subject ,Population ,Fertility ,fatherhood ,03 medical and health sciences ,0302 clinical medicine ,relationships and sex education ,Health care ,reproductive health ,education ,Socioeconomic status ,Reproductive health ,media_common ,education.field_of_study ,030219 obstetrics & reproductive medicine ,business.industry ,Fertility awareness ,Conflict of interest ,childbearing ,030104 developmental biology ,fertility awareness ,Original Article ,business ,Psychology ,qualitative research ,Qualitative research - Abstract
Study question What are the underlying reasons for low male engagement in fertility and reproductive health discussions and decision-making? Summary answer The perception of women's primacy in fertility and reproductive health limits the extent to which men believe their engagement is important. What is known already Active participation of men in the process of informed decision-making regarding childbearing is beneficial for mother, father, and child. However, in research studies in these areas, little attention has been given to men. Additionally, there is poor engagement by men, as well as a dearth of information from, and on, the male perspective. Study design size duration In total, 35 semi-structured telephone and face-to-face interviews were conducted in an office setting with three groups: 13 lay women, 13 lay men, and 9 (2 male and 7 female) healthcare professionals. Interviews took place between October 2016 and February 2017. Participants/materials setting methods Participants were men and women of reproductive age from the general population and healthcare professionals who had completed an online fertility awareness survey and agreed to follow-up interviews. Interviews were audio recorded and lasted ~1 hour, during which participants were asked to provide their views on childbearing decision-making, and male and female representation in fertility and reproductive health. Data was transcribed verbatim and analysed qualitatively via framework analysis. Main results and the role of chance Both men and women saw fertility as a woman's issue, but from different viewpoints. Women saw it from the perspective of societal stereotypes regarding male and female roles, whereas men tended to defer to the woman's primacy in reproductive decisions. Men generally wanted to be involved in childbearing discussions and improve their fertility knowledge. However, they felt they did not have a voice on the topic because discussions have traditionally focused on women. The notion that men are not expected to be interested and engaged thus becomes a self-fulfilling prophecy. Healthcare professionals agreed that fertility was perceived as the woman's domain, but also highlighted that poor male involvement is typically observed across healthcare needs and is not necessarily unique to fertility and reproductive health. Limitations reasons for caution Due to the online recruitment method, there is a potential bias towards respondents of higher, rather than lower, socioeconomic status within the general population. Wider implications of the findings Fertility tends to be seen as a private topic. Additional concerted effort by reproductive health researchers, charity organisations, educators, healthcare service providers, and policy makers is needed to proactively encourage male involvement in reproductive decision-making. This can be achieved through normalising and breaking taboos around the topic, male-friendly research study design approaches, male-inclusive reproductive healthcare services, implementation of health policies that recognise the needs of men, encouraging male research staff representation, and age-appropriate educational programmes on sexual and reproductive health, which include boys and adolescents from a young age. Study funding/competing interests Research funding was received from SPD Development Co. Ltd. B.G. and S.J. are employed by SPD Development Co. Ltd. None of the other authors have any conflict of interest related to the discussed topic. Trial registration number Not applicable.
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- 2019
31. Draft Genome Sequence from a Putative New Genus and Species in the Family Methanoregulaceae Isolated from the Anoxic Basin of Lake Untersee in East Antarctica
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Sarah Stewart Johnson, Mary Beth Wilhelm, Mia Vanderwilt, Aria S. Hahn, Connor Morgan-Lang, N. Y. Wagner, and Dale T. Andersen
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Whole genome sequencing ,0303 health sciences ,biology ,Ecology ,030302 biochemistry & molecular biology ,Genome Sequences ,East antarctica ,Structural basin ,biology.organism_classification ,Anoxic waters ,03 medical and health sciences ,Immunology and Microbiology (miscellaneous) ,Methanoregulaceae ,Genus ,Genetics ,Molecular Biology ,Organism ,030304 developmental biology ,Archaea - Abstract
Here, we report the draft genome sequence for a new putative genus and species in the Methanoregulaceae family, whose members are generally slow-growing rod-shaped or coccoid methanogenic archaea. The information on this sediment-dwelling organism sheds light on the prokaryotes inhabiting isolated, deep, and extremely cold methane-rich environments.
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- 2019
32. Application of TMAH thermochemolysis to the detection of nucleobases: Application to the MOMA and SAM space experiment
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Pin Lu, Paul R. Mahaffy, M. Morisson, Cyril Szopa, Melissa Guzman, Jason P. Dworkin, Maeva Millan, J. L. Eigenbrode, Jean-Yves Bonnet, Caroline Freissinet, Sarah Stewart Johnson, Amy J. Williams, Yuanyuan He, D. Coscia, Arnaud Buch, Daniel P. Glavin, Charles Malespin, Rafael Navarro-González, Laboratoire de Génie des Procédés et Matériaux - EA 4038 (LGPM), CentraleSupélec, PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), University of Florida [Gainesville] (UF), Georgetown University [Washington] (GU), NASA Goddard Space Flight Center (GSFC), Laboratorio de Química de Plasmas y Estudios Planetarios [Mexico], Instituto de Ciencias Nucleares [Mexico], Universidad Nacional Autónoma de México (UNAM)-Universidad Nacional Autónoma de México (UNAM), Telespazio France, and Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)
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Hot Temperature ,Guanine ,Mars ,MOMA ,02 engineering and technology ,Pyrimidinones ,01 natural sciences ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,Nucleobase ,chemistry.chemical_compound ,Limit of Detection ,Hypoxanthine ,[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere ,Tetramethylammonium hydroxide ,Nucleobases ,Chromatography ,Tetramethylammonium hydroxide (TMAH)SAM ,010401 analytical chemistry ,Uracil ,Space Flight ,021001 nanoscience & nanotechnology ,Derivatization ,0104 chemical sciences ,Thymine ,chemistry ,13. Climate action ,Purines ,Sample Analysis at Mars ,Thermochemolysis ,GC-MS ,0210 nano-technology ,Cytosine ,Pyrolysis - Abstract
International audience; Thermochemolysis of seven nucleobases—adenine, thymine, uracil, cytosine, guanine, xanthine, and hypoxanthine—in tetramethylammonium hydroxide (TMAH) was studied individually by pyrolysis gas chromatography mass spectrometry in the frame of the Mars surface exploration. The analyses were performed under conditions relevant to the Sample Analysis at Mars (SAM) instrument of the Mars Curiosity Rover and the Mars Organic Molecule Analyzer (MOMA) instrument of the ExoMars Rover. The thermochemolysis products of each nucleobase were identified and the reaction mechanisms studied. The thermochemolysis temperature was optimized and the limit of detection and quantification of each nucleobase were also investigated. Results indicate that 600°C is the optimal thermochemolysis temperature for all seven nucleobases. The methylated products trimethyl-adenine, 1, 3-dimethyl-thymine, 1, 3-dimethyl-uracil, trimethyl-cytosine, 1, 3, 7-trimethyl-xanthine (caffeine), and dimethyl-hypoxanthine, respectively, are the most stable forms of adenine, thymine, uracil, cytosine, guanine, and xanthine, and hypoxanthine in TMAH solutions. The limits of detection for adenine, thymine, and uracil were 0.075 nmol; the limits of detection for guanine, cytosine, and hypoxanthine were higher, at 0.40, 0.55, and 0.75 nmol, respectively. These experiments allowed to well constrain the analytical capabilities of the thermochemolysis experiments that will be performed on Mars to detect nucleobases.
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- 2019
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33. Late-Stage Diagenetic Concretions in the Murray Formation, Gale Crater, Mars
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Christopher H. House, Lucy M. Thompson, K. Stack, Woodward W. Fischer, Roger C. Wiens, Amy J. Williams, Marion Nachon, Vivian Z. Sun, Sarah Stewart Johnson, Linda C. Kah, Scott VanBommel, and R. E. Kronyak
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010504 meteorology & atmospheric sciences ,Geochemistry ,Late stage ,Gale crater ,Astronomy and Astrophysics ,Mars Exploration Program ,Sediment compaction ,engineering.material ,Cementation (geology) ,01 natural sciences ,Diagenesis ,Space and Planetary Science ,Concretion ,0103 physical sciences ,engineering ,010303 astronomy & astrophysics ,Lithification ,0105 earth and related environmental sciences - Abstract
Concretions are prevalent features in the generally lacustrine deposits of the Murray formation in Gale crater. In this work, we document the morphologic, textural, and chemical properties of these concretions throughout 300 m of Murray formation stratigraphy from Mars Science Laboratory observations between Sols 750–1900. We interpret these observations to constrain the timing and composition of post-depositional fluid events at Gale crater. We determine that the overall diversity of concretion morphology, size, texture, and chemistry throughout the Murray formation indicates that concretions formed in multiple, likely late diagenetic, episodes with varying fluid chemistries. Four major concretion assemblages are observed at distinct stratigraphic intervals and approximately correlate with major distinct chemical enrichments in Mg-S-Ni-Cl, Mn-P, and Ca-S, among other local enrichments. Different concretion size populations and complex relationships between concretions and veins also suggest multiple precipitation events at Gale crater. Many concretions likely formed during late diagenesis after sediment compaction and lithification, based on observations of concretions preserving primary host rock laminations without differential compaction. An upsection decrease in overall concretion size corresponds to an inferred upsection decrease in porosity and permeability, thus constraining concretion formation as postdating fluid events that produced initial cementation and porosity loss. The combined observations of late diagenetic concretions and distinct chemical enrichments related to concretions allow constraints to be placed on the chemistry of late stage fluids at Gale crater. Collectively, concretion observations from this work and previous studies of other diagenetic features (veins, alteration halos) suggest at least six post-depositional events that occurred at Gale crater after the deposition of the Murray formation.
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- 2019
34. Radiation Tolerance of Nanopore Sequencing Technology for Life Detection on Mars and Europa
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Sarah Stewart Johnson, Ryan E. Sutton, William B. Brinckerhoff, Julie G. Bevilacqua, Aaron S. Burton, Margaret M. Weng, Michael J. Mumma, Elena Zaikova, and Mark A. Sutton
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0301 basic medicine ,Extraterrestrial Environment ,Computer science ,lcsh:Medicine ,Mars ,Radiation ,Radiation Tolerance ,Space exploration ,Article ,Astrobiology ,Ionizing radiation ,03 medical and health sciences ,chemistry.chemical_compound ,Nanopores ,0302 clinical medicine ,Life ,lcsh:Science ,Radiation resistance ,Multidisciplinary ,lcsh:R ,RNA ,Mars Exploration Program ,Sequence Analysis, DNA ,Nanopore ,DNA sequencer ,030104 developmental biology ,chemistry ,Minion ,Jupiter ,Electromagnetic shielding ,lcsh:Q ,Nanopore sequencing ,030217 neurology & neurosurgery ,DNA - Abstract
The search for life beyond Earth is a key motivator in space exploration. Informational polymers, like DNA and RNA, are key biosignatures for life as we know it. The MinION is a miniature DNA sequencer based on versatile nanopore technology that could be implemented on future planetary missions. A critical unanswered question is whether the MinION and its protein-based nanopores can withstand increased radiation exposure outside Earth’s shielding magnetic field. We evaluated the effects of ionizing radiation on the MinION platform – including flow cells, reagents, and hardware – and discovered limited performance loss when exposed to ionizing doses comparable to a mission to Mars. Targets with harsher radiation environments, like Europa, would require improved radiation resistance via additional shielding or design refinements.
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- 2019
35. The Grayness of the Origin of Life
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Christopher H. House, Hillary Smith, Barbara Sherwood Lollar, Sarah E. Maurer, Sarah Stewart Johnson, Natalie Grefenstette, Christopher P. Kempes, Chad I. Pozarycki, Andrew D. Ellington, Peter R. Girguis, Danielle N. Simkus, H. V. Graham, Andrew S. Hyde, Luoth Chou, Eric Libby, and G. Matthew Fricke
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0301 basic medicine ,Science ,Metalloenzymes ,Prebiotic evolution ,prebiotic evolution ,agnostic biosignatures ,01 natural sciences ,origin of life ,General Biochemistry, Genetics and Molecular Biology ,lipids ,Evolutionsbiologi ,03 medical and health sciences ,meteoritic organics ,Abiogenesis ,Origin of life ,Thioesters ,0103 physical sciences ,010303 astronomy & astrophysics ,Life detection ,Ecology, Evolution, Behavior and Systematics ,thioesters ,Meteoritic organics ,Evolutionary Biology ,metalloenzymes ,Agnostic biosignatures ,evolutionary transitions ,Paleontology ,Evolutionary transitions ,Lipids ,Pre-RNAs ,Epistemology ,030104 developmental biology ,pre-RNAs ,Space and Planetary Science ,Perspective ,Psychology - Abstract
In the search for life beyond Earth, distinguishing the living from the non-living is paramount. However, this distinction is often elusive, as the origin of life is likely a stepwise evolutionary process, not a singular event. Regardless of the favored origin of life model, an inherent “grayness” blurs the theorized threshold defining life. Here, we explore the ambiguities between the biotic and the abiotic at the origin of life. The role of grayness extends into later transitions as well. By recognizing the limitations posed by grayness, life detection researchers will be better able to develop methods sensitive to prebiotic chemical systems and life with alternative biochemistries.
- Published
- 2021
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36. Recovery of Fatty Acids from Mineralogic Mars Analogs by TMAH Thermochemolysis for the Sample Analysis at Mars Wet Chemistry Experiment on the Curiosity Rover
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R. Williams, Rafael Navarro-González, Cyril Szopa, Paul R. Mahaffy, Amy J. Williams, Daniel P. Glavin, Jennifer L. Eigenbrode, Charles Malespin, Maeva Millan, Kathleen C. Benison, Roger E. Summons, Sarah Stewart Johnson, Arnaud Buch, Mary Beth Wilhelm, C. A. Knudson, Amy McAdam, J. M. T. Lewis, Kathleen L. Craft, Melissa Floyd, Shane S. O'Reilly, Caroline Freissinet, Slavka Andrejkovičová, Department of Physics, Astronomy, and Geosciences [Towson], Towson University [Towson, MD, United States], University of Maryland System-University of Maryland System, Center for Research and Exploration in Space Science and Technology [Baltimore] (CRESST), University of Maryland [Baltimore County] (UMBC), GSFC Solar System Exploration Division, NASA Goddard Space Flight Center (GSFC), NASA Ames Research Center (ARC), Department of Earth, Atmospheric and Planetary Sciences [MIT, Cambridge] (EAPS), Massachusetts Institute of Technology (MIT), UCD School od Earth Sciences, University College Dublin [Dublin] (UCD), Department of Biology [Washington], Georgetown University [Washington] (GU), Johns Hopkins University Applied Physics Laboratory [Laurel, MD] (APL), Center for Research and Exploration in Space Science and Technology [College Park] (CRESST), University of Maryland [College Park], Universities Space Research Association (USRA), Laboratoire de Génie des Procédés et Matériaux - EA 4038 (LGPM), CentraleSupélec, PLANETO - LATMOS, Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS), Department of Geology and Geography [Morgantown], West Virginia University [Morgantown], Instituto de Ciencias Nucleares [Mexico], and Universidad Nacional Autónoma de México (UNAM)
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Time Factors ,Extraterrestrial Environment ,010504 meteorology & atmospheric sciences ,Iron ,Carboxylic acid ,Sample Analysis at Mars (SAM) instrument ,Inorganic chemistry ,Carboxylic Acids ,Mars ,Iron sulfide ,Mass spectrometry ,01 natural sciences ,Gas Chromatography-Mass Spectrometry ,TMAH ,chemistry.chemical_compound ,Exobiology ,0103 physical sciences ,MSL ,Spacecraft ,010303 astronomy & astrophysics ,Research Articles ,0105 earth and related environmental sciences ,chemistry.chemical_classification ,Minerals ,Tetramethylammonium hydroxide ,[SDU.ASTR]Sciences of the Universe [physics]/Astrophysics [astro-ph] ,Methanol ,Fatty Acids ,Temperature ,Esters ,Mars Exploration Program ,Silicon Dioxide ,Agricultural and Biological Sciences (miscellaneous) ,FAME ,Quaternary Ammonium Compounds ,Pyrolysis–gas chromatography–mass spectrometry ,chemistry ,13. Climate action ,Space and Planetary Science ,Molecular biosignatures ,Sample Analysis at Mars ,Clay ,Gas chromatography–mass spectrometry - Abstract
The Mars Curiosity rover carries a diverse instrument payload to characterize habitable environments in the sedimentary layers of Aeolis Mons. One of these instruments is Sample Analysis at Mars (SAM), which contains a mass spectrometer that is capable of detecting organic compounds via pyrolysis gas chromatography mass spectrometry (py-GC-MS). To identify polar organic molecules, the SAM instrument carries the thermochemolysis reagent tetramethylammonium hydroxide (TMAH) in methanol (hereafter referred to as TMAH). TMAH can liberate fatty acids bound in macromolecules or chemically bound monomers associated with mineral phases and make these organics detectable via gas chromatography mass spectrometry (GC-MS) by methylation. Fatty acids, a type of carboxylic acid that contains a carboxyl functional group, are of particular interest given their presence in both biotic and abiotic materials. This work represents the first analyses of a suite of Mars-analog samples using the TMAH experiment under select SAM-like conditions. Samples analyzed include iron oxyhydroxides and iron oxyhydroxysulfates, a mixture of iron oxides/oxyhydroxides and clays, iron sulfide, siliceous sinter, carbonates, and shale. The TMAH experiments produced detectable signals under SAM-like pyrolysis conditions when organics were present either at high concentrations or in geologically modern systems. Although only a few analog samples exhibited a high abundance and variety of fatty acid methyl esters (FAMEs), FAMEs were detected in the majority of analog samples tested. When utilized, the TMAH thermochemolysis experiment on SAM could be an opportunity to detect organic molecules bound in macromolecules on Mars. The detection of a FAME profile is of great astrobiological interest, as it could provide information regarding the source of martian organic material detected by SAM.
- Published
- 2019
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37. LATE-STAGE DIAGENETIC CONCRETIONS IN THE LACUSTRINE MURRAY FORMATION, GALE CRATER, MARS
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Marion Nachon, Linda Kah, Michelle E. Minitti, Kathryn M. Stack, Roger C. Wiens, Vivian Z. Sun, R. E. Kronyak, and Sarah Stewart Johnson
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Late stage ,Geochemistry ,Gale crater ,Mars Exploration Program ,Geology ,Diagenesis - Published
- 2018
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38. Large sulfur isotope fractionations in Martian sediments at Gale crater
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Rebecca E. Plummer, Heather B. Franz, Andrew Steele, C. A. Knudson, Pamela G. Conrad, Roger E. Summons, J. W. Dottin, Paul R. Mahaffy, John P. Grotzinger, R. V. Morris, Rafael Navarro-González, Susanne P. Schwenzer, Kenneth A. Farley, Scott M. McLennan, Christopher H. House, Daniel L. Eldridge, Amy McAdam, D. T. Vaniman, Caroline Freissinet, Joel A. Hurowitz, Sarah Stewart Johnson, P. D. Archer, E. B. Rampe, Brad Sutter, J. C. Stern, Woodward W. Fischer, S. K. Atreya, D. W. Ming, Daniel P. Glavin, J. L. Eigenbrode, and A. A. Pavlov
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event.disaster_type ,Martian ,010504 meteorology & atmospheric sciences ,Crustal recycling ,chemistry.chemical_element ,Mars Exploration Program ,010502 geochemistry & geophysics ,01 natural sciences ,Sulfur ,Equilibrium fractionation ,Astrobiology ,Volcanic Gases ,chemistry ,Meteorite ,Meteorology & Atmospheric Sciences ,General Earth and Planetary Sciences ,event ,Composition of Mars ,Geology ,0105 earth and related environmental sciences - Abstract
© 2017 Macmillan Publishers Limited, part of Springer Nature. All rights reserved. Variability in the sulfur isotopic composition in sediments can reflect atmospheric, geologic and biological processes. Evidence for ancient fluvio-lacustrine environments at Gale crater on Mars and a lack of efficient crustal recycling mechanisms on the planet suggests a surface environment that was once warm enough to allow the presence of liquid water, at least for discrete periods of time, and implies a greenhouse effect that may have been influenced by sulfur-bearing volcanic gases. Here we report in situ analyses of the sulfur isotopic compositions of SO2volatilized from ten sediment samples acquired by NASA's Curiosity rover along a 13 km traverse of Gale crater. We find large variations in sulfur isotopic composition that exceed those measured for Martian meteorites and show both depletion and enrichment in34S. Measured values of Δ34S range from - 47 ± 14‰ to 28 ± 7‰, similar to the range typical of terrestrial environments. Although limited geochronological constraints on the stratigraphy traversed by Curiosity are available, we propose that the observed sulfur isotopic signatures at Gale crater can be explained by equilibrium fractionation between sulfate and sulfide in an impact-driven hydrothermal system and atmospheric processing of sulfur-bearing gases during transient warm periods.
- Published
- 2017
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39. Real-Time DNA Sequencing in the Antarctic Dry Valleys Using the Oxford Nanopore Sequencer
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David Goerlitz, Sarah Stewart Johnson, Elena Zaikova, Scott Tighe, and Yu Bai
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0301 basic medicine ,Short Communication ,Antarctic Regions ,Biology ,computer.software_genre ,DNA sequencing ,03 medical and health sciences ,Molecular typing ,Environmental Microbiology ,Genomic library ,Molecular Biology ,Reference standards ,Genetics ,High-Throughput Nucleotide Sequencing ,Sequence Analysis, DNA ,Reference Standards ,Bacteriophage lambda ,Molecular Typing ,Nanopore ,030104 developmental biology ,Minion ,Operating system ,Research questions ,Nanopore sequencing ,Desert Climate ,computer - Abstract
The ability to sequence DNA outside of the laboratory setting has enabled novel research questions to be addressed in the field in diverse areas, ranging from environmental microbiology to viral epidemics. Here, we demonstrate the application of offline DNA sequencing of environmental samples using a hand-held nanopore sequencer in a remote field location: the McMurdo Dry Valleys, Antarctica. Sequencing was performed using a MK1B MinION sequencer from Oxford Nanopore Technologies (ONT; Oxford, United Kingdom) that was equipped with software to operate without internet connectivity. One-direction (1D) genomic libraries were prepared using portable field techniques on DNA isolated from desiccated microbial mats. By adequately insulating the sequencer and laptop, it was possible to run the sequencing protocol for up to 2½ h under arduous conditions.
- Published
- 2017
40. Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP)
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Nathan J. Bivens, Stefan J. Green, Natàlia Garcia-Reyero, Sofia Ahsanuddin, Shawn Levy, Sarah Stewart Johnson, Elena Zaikova, Nadim J. Ajami, Lynn M. Schriml, Joseph Russell Carmical, Noah Alexander, Rita R. Colwell, Jessica J Hoffman, Kelley Thomas, Tara M. Rock, T. C. Hunter, Ian C. Herriott, Ken McGrath, Ebrahim Afshinnekoo, Daniela Bezdan, Diana Krawczyk, Scott Tighe, Matthew L. Settles, Jodie Lee, Nick Greenfield, Alexa B. R. McIntyre, Jon Penterman, Nikos C. Kyrpides, Mohamed S. Donia, Felipe Gómez, Don A. Baldwin, Jonathan Foox, Samantha B. Joye, Joshua Hyman, Christopher E. Mason, and Ellen Jorgensen
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0301 basic medicine ,Technology ,Biology ,shotgun sequencing ,Medical and Health Sciences ,Article ,03 medical and health sciences ,Environmental Microbiology ,Genetics ,Extreme environment ,Profiling (information science) ,Microbiome ,Polyzyme ,Molecular Biology ,Life Below Water ,Microbial Biofilms ,metagenomics ,whole genome ,Shotgun sequencing ,Ecology ,Microbiota ,Human Genome ,Bacterial ,DNA ,Reference Standards ,Biological Sciences ,Molecular Typing ,030104 developmental biology ,13. Climate action ,Metagenomics ,Project site ,RNA ,Metagenome ,Sequence Analysis ,extremophile ,Extreme Environments ,Biotechnology - Abstract
© 2017, Association of Biomolecular Resource Facilities. All rights reserved. The Extreme Microbiome Project (XMP) is a project launched by the Association of Biomolecular Resource Facilities Metagenomics Research Group (ABRF MGRG) that focuses on whole genome shotgun sequencing of extreme and unique environments using a wide variety of biomolecular techniques. The goals are multifaceted, including development and refinement of new techniques for the following: 1) the detection and characterization of novel microbes, 2) the evaluation of nucleic acid techniques for extremophilic samples, and 3) the identification and implementation of the appropriate bioinformatics pipelines. Here, we highlight the different ongoing projects that we have been working on, as well as details on the various methods we use to characterize the microbiome and metagenome of these complex samples. In particular, we present data of a novel multienzyme extraction protocol that we developed, called Polyzyme or MetaPolyZyme. Presently, the XMP is characterizing sample sites around the world with the intent of discovering new species, genes, and gene clusters. Once a project site is complete, the resulting data will be publically available. Sites include Lake Hillier in Western Australia, the “Door to Hell” crater in Turkmenistan, deep ocean brine lakes of the Gulf of Mexico, deep ocean sediments from Greenland, permafrost tunnels in Alaska, ancient microbial biofilms from Antarctica, Blue Lagoon Iceland, Ethiopian toxic hot springs, and the acidic hypersaline ponds in Western Australia.
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- 2017
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41. PRESERVATION OF BIOSIGNATURES IN HALITE AND GYPSUM FROM MARS-ANALOG ACID BRINE LAKES AND ASSOCIATED EOLIAN SEDIMENTS
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Sarah Stewart Johnson, Melanie R. Mormile, Kathleen C. Benison, and Francis J. Karmanocky
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Gypsum ,Brine ,engineering ,Geochemistry ,Halite ,Mars Exploration Program ,engineering.material ,Geology ,Eolian sediments - Published
- 2016
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42. Aerobot measurements successfully obtained during Solo Spirit Balloon Mission
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James A. Cutts, Raymond E. Avidson, T. Stein, Aaron D. Bachelder, Edward A. Guinness, Jonathan M. Cameron, Sarah Stewart Johnson, Robert V. Ivlev, Judd D. Bowman, Ralph A. Kahn, and S. Slavney
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Aerobot ,Engineering ,biology ,business.industry ,Venus ,Mars Exploration Program ,Balloon ,biology.organism_classification ,Astrobiology ,symbols.namesake ,First person ,symbols ,General Earth and Planetary Sciences ,Titan (rocket family) ,business - Abstract
Robotic balloons, also known as aerobots, have become candidates for collecting atmospheric data and detailed surface observations of Venus, Mars, and Titan. A mission to Venus over a decade ago used two of them. Their inclusion last year in attempts by a balloonist to circumnavigate the Earth aptly demonstrated their utility for remote sensing and in situ observations of planetary atmospheres. To simulate aspects of an aerobot mission, a small payload to measure local atmospheric conditions and balloon position and velocity was included on Solo Spirit “Round the World” flights during January and August of last year. These missions, flown in Roziere balloons, were attempts by Steve Fossett to become the first person to circumnavigate the globe in a balloon without stopping. Neither attempt was successful, but the aerobot came through with flying colors.
- Published
- 1999
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43. Fate of SO2in the ancient Martian atmosphere: Implications for transient greenhouse warming
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Sarah Stewart Johnson, Michael A. Mischna, and Alexander A. Pavlov
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Martian ,Atmospheric Science ,Ecology ,Paleontology ,Soil Science ,chemistry.chemical_element ,Forestry ,Mars Exploration Program ,Atmosphere of Mars ,Aquatic Science ,Oceanography ,Sulfur ,Astrobiology ,Atmosphere ,Geophysics ,Meteorite ,chemistry ,Space and Planetary Science ,Geochemistry and Petrology ,Martian surface ,Earth and Planetary Sciences (miscellaneous) ,Greenhouse effect ,Geology ,Earth-Surface Processes ,Water Science and Technology - Abstract
[1] There is increasing evidence that sulfur played an important role on early Mars. Sulfur is distributed ubiquitously on the Martian surface, and sulfur in Martian meteorites carries the signature of atmospheric interactions. Recent work suggests that the radiative properties of sulfur volatiles that were degassed into the Martian atmosphere may have caused a greenhouse effect early in the planet's history. It remains unclear, however, over what timescales warming from sulfur volatiles would have persisted, and consequently how significant this warming may have been. While most photochemistry research to date has concentrated on current Martian conditions, the ancient Martian atmosphere was thicker, warmer, and more reducing than the current regime. Here we investigate sulfur photochemistry in a 500 mb ancient Martian atmosphere. After adapting a model used to study sulfur photochemistry on Earth during the Archean, we find a short lifetime for SO2 in the current Martian atmosphere, similar to results of other photochemical studies. However, our simulations suggest that moderate mixing ratios of SO2 (10−8 ≤ f(SO2) ≤ 10−6) could have persisted in the ancient Martian atmosphere for hundreds of years, generating short but potent warming events following episodes of volcanic activity.
- Published
- 2009
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44. Overview of the Microscopic Imager Investigation during Spirit's first 450 sols in Gusev crater
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Mark R. Rosiek, Brenda J. Franklin, Richard Springer, Kevin F. Mullins, Kris J. Becker, Brent A. Archinal, Albert S. Yen, Charles Budney, Robert M. Sucharski, James F. Bell, Nathalie A. Cabrol, Craig E. Leff, T. Sucharski, Sarah Stewart Johnson, Donna M. Galuszka, Robert S. Anderson, Janet M. Barrett, K. E. Herkenhoff, Ella Mae Lee, Morten Madsen, Patricia A. Garcia, S. W. Squyres, Mark T. Lemmon, Bonnie L. Redding, D. Cook, N. Spanovich, Jack D. Farmer, Kjartan M. Kinch, Lisa R. Gaddis, B. L. Ehlmann, Mary G. Chapman, M. Sims, Trent M. Hare, Elpitha Howington-Kraus, Raymond E. Arvidson, Randolph L. Kirk, J. Torson, Lutz Richter, Laurence A. Soderblom, R. J. Sullivan, Justin N. Maki, and Jeffrey R. Johnson
- Subjects
Atmospheric Science ,Ecology ,Paleontology ,Soil Science ,Pyroclastic rock ,Mineralogy ,Forestry ,Crust ,Mars Exploration Program ,Igneous textures ,Aquatic Science ,Oceanography ,Petrography ,Geophysics ,Impact crater ,Space and Planetary Science ,Geochemistry and Petrology ,Earth and Planetary Sciences (miscellaneous) ,Aeolian processes ,Radiometric dating ,Geology ,Earth-Surface Processes ,Water Science and Technology - Abstract
The Microscopic Imager (MI) on the Mars Exploration Rover Spirit has returned images of Mars with higher resolution than any previous camera system, allowing detailed petrographic and sedimentological studies of the rocks and soils at the Gusev landing site. Designed to simulate a geologist's hand lens, the MI is mounted on Spirit's instrument arm and can resolve objects 0.1 mm in size or larger. This paper provides an overview of MI operations, data calibration, processing, and analysis of MI data returned during the first 450 sols (Mars days) of the Spirit landed mission. The primary goal of this paper is to facilitate further analyses of MI data by summarizing the methods used to acquire and process the data, the radiometric and geometric accuracy of MI data products, and the availability of archival products. In addition, scientific results of the MI investigation are summarized. MI observations show that poorly sorted soils are common in Gusev crater, although aeolian bedforms have well-sorted coarse sand grains on their surfaces. Abraded surfaces of plains rocks show igneous textures, light-toned veins or fracture-filling minerals, and discrete coatings. The rocks in the Columbia Hills have a wide variety of granular textures, consistent with volcaniclastic or impact origins. Case hardening and submillimeter veins observed in the rocks as well as soil crusts and cemented clods imply episodic subsurface aqueous fluid movement, which has altered multiple geologic units in the Columbia Hills. The MI also monitored Spirit's solar panels and the magnets on the rover's deck.
- Published
- 2006
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45. Hydrologic and Isotopic Modeling of Alpine Lake Waiau, Mauna Kea, Hawai'i
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Bethany L. Ehlmann, Brian A. Ebel, Jeffery A. Byers, Sarah Stewart Johnson, Robert E. Criss, Nathan O. Snider, Bradley L. Jolliff, Julie Dianne Morris, Nicole S. Lovenduski, and Raymond E. Arvidson
- Subjects
Isotopic signature ,Multidisciplinary ,Mauna kea ,Ecology ,Winter storm ,Precipitation ,Atmospheric sciences ,Water budget ,Isotopic composition - Abstract
Analysis of hydrologic, meteorologic, and isotopic data collected over 3 yr quantifies and explains the enormous variability and isotopic enrichment (δ^(18)O = +16.9,δD = +50.0) of alpine Lake Waiau, a culturally and ecologically significant perched lake near the summit of Mauna Kea, Hawai‘i. Further, a simple one-dimensional hydrologic model was developed that couples standard water budget modeling with modeling of δD and δ^(18)O isotopic composition to provide daily predictions of lake volume and chemistry. Data analysis and modeling show that winter storms are the primary source of water for the lake, adding a distinctively light isotopic signature appropriate for high-altitude precipitation. Evaporation at the windy, dry summit is the primary loss mechanism for most of the year, greatly enriching the lake in heavy isotopes.
- Published
- 2005
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