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Numerous biodiversity–ecosystem functioning (BEF) experiments have shown that plant community productivity typically increases with species diversity. In these studies, diversity is generally quantified using metrics of taxonomic, phylogenetic, or functional differences among community members. Research has also shown that the relationships between species diversity and functioning depends on the spatial scale considered, primarily because larger areas may contain different ecosystem types and span gradients in environmental conditions, which result in a turnover of the species set present locally. A fact that has received little attention, however, is that ecological systems are hierarchically structured, from genes to individuals to communities to entire landscapes, and that additional biological variation occurs at levels of organization above and below those typically considered in BEF research. Here, we present cases of diversity effects at different hierarchical levels of organization and compare these to the species‐diversity effects traditionally studied. We argue that when this evidence is combined across levels, a general framework emerges that allows the transfer of insights and concepts between traditionally disparate disciplines. Such a framework presents an important step towards a better understanding of the functional importance of diversity in complex, real‐world systems.

Surface reflectance is an important data product in imaging spectroscopy for obtaining surface information. The complex retrieval of surface reflectance, however, critically relies on accurate knowledge of atmospheric absorption and scattering, and the compensation of these effects. Furthermore, illumination and observation geometry in combination with surface reflectance anisotropy determine dynamics in retrieved surface reflectance not related to surface absorption properties. To the best of authors’ knowledge, no comprehensive assessment of the impact of atmospheric, topographic, and anisotropy effects on derived surface information is available so far.This study systematically evaluates the impact of these effects on reflectance, albedo, and vegetation products. Using three well-established processing schemes (ATCOR F., ATCOR R., and BREFCOR), high-resolution APEX imaging spectroscopy data, covering a large gradient of illumination and observation angles, are brought to several processing states, varyingly affected by mentioned effects. Pixel-wise differences of surface reflectance, albedo, and spectral indices of neighboring flight lines are quantitatively analyzed in their respective overlapping area. We found that compensation of atmospheric effects reveals actual anisotropy-related dynamics in surface reflectance and derived albedo, related to an increase in pixel-wise relative reflectance and albedo differences of more than 40%. Subsequent anisotropy compensation allows us to successfully reduce apparent relative reflectance and albedo differences by up to 20%. In contrast, spectral indices are less affected by atmospheric and anisotropy effects, showing relative differences of 3% to 10% in overlapping regions of flight lines.We recommend to base decisions on the use of appropriate processing schemes on individual use cases considering envisioned data products.

Remote sensing of vegetation by spectroscopy is increasingly used to characterize trait distributions in plant communities. How leaves interact with electromagnetic radiation is determined by their structure and contents of pigments, water, and abundant dry matter constituents like lignins, phenolics, and proteins. High-resolution ("hyperspectral") spectroscopy can characterize trait variation at finer scales, and may help to reveal underlying genetic variation-information important for assessing the potential of populations to adapt to global change. Here, we use a set of 360 inbred genotypes of the wild coyote tobacco Nicotiana attenuata: wild accessions, recombinant inbred lines (RILs), and transgenic lines (TLs) with targeted changes to gene expression, to dissect genetic versus non-genetic influences on variation in leaf spectra across three experiments. We calculated leaf reflectance from hand-held field spectroradiometer measurements covering visible to short-wave infrared wavelengths of electromagnetic radiation (400-2500 nm) using a standard radiation source and backgrounds, resulting in a small and quantifiable measurement uncertainty. Plants were grown in more controlled (glasshouse) or more natural (field) environments, and leaves were measured both on- and off-plant with the measurement set-up thus also in more to less controlled environmental conditions. Entire spectra varied across genotypes and environments. We found that the greatest variance in leaf reflectance was explained by between-experiment and non-genetic between-sample differences, with subtler and more specific variation distinguishing groups of genotypes. The visible spectral region was most variable, distinguishing experimental settings as well as groups of genotypes within experiments, whereas parts of the short-wave infrared may vary more specifically with genotype. Overall, more genetically variable plant populations also showed more varied leaf spectra. We highlight key consideration

Freshwater biodiversity is critically affected by human modifications of terrestrial land use and land cover (LULC). Yet, knowledge of the spatial extent and magnitude of LULC-aquatic biodiversity linkages is still surprisingly limited, impeding the implementation of optimal management strategies. Here, we compiled fish diversity data across a 160,000-km² subtropical river catchment in Thailand characterized by exceptional biodiversity yet intense anthropogenic alterations, and attributed fish species richness and community composition to contemporary terrestrial LULC across the catchment. We estimated a spatial range of LULC effects extending up to about 20 km upstream from sampling sites, and explained nearly 60% of the variance in the observed species richness, associated with major LULC categories including croplands, forest, and urban areas. We find that integrating both spatial range and magnitudes of LULC effects is needed to accurately predict fish species richness. Further, projected LULC changes showcase future gains and losses of fish species richness across the river network and offer a scalable basis for riverine biodiversity conservation and land management, allowing for potential mitigation of biodiversity loss in highly diverse yet data-deficient tropical to sub-tropical riverine habitats.

Aim: Globally distributed plant trait data are increasingly used to understand relationships between biodiversity and ecosystem processes. However, global trait databases are sparse because they are compiled from many, mostly small databases. This sparsity in both trait space completeness and geographical distribution limits the potential for both multivariate and global analyses. Thus, ‘gap-filling’ approaches are often used to impute missing trait data. Recent methods, like Bayesian hierarchical probabilistic matrix factorization (BHPMF), can impute large and sparse data sets using side information. We investigate whether BHPMF imputation leads to biases in trait space and identify aspects influencing bias to provide guidance for its usage. Innovation: We use a fully observed trait data set from which entries are randomly removed, along with extensive but sparse additional data. We use BHPMF for imputation and evaluate bias by: (1) accuracy (residuals, RMSE, trait means), (2) correlations (bi-and multivariate) and (3) taxonomic and functional clustering (valuewise, uni-and multivariate). BHPMF preserves general patterns of trait distributions but induces taxonomic clustering. Data set–external trait data had little effect on induced taxonomic clustering and stabilized trait–trait correlations. Main Conclusions: Our study extends the criteria for the evaluation of gap-filling beyond RMSE, providing insight into statistical data structure and allowing better informed use of imputed trait data, with improved practice for imputation. We expect our findings to be valuable beyond applications in plant ecology, for any study using hierarchical side information for imputation.

Aquatic and terrestrial ecosystems are tightly connected via spatial flows of organisms and resources. Such land-water linkages integrate biodiversity across ecosystems and suggest a spatial association of aquatic and terrestrial biodiversity. However, knowledge about the extent of this spatial association is limited. By combining satellite remote sensing (RS) and environmental DNA (eDNA) extraction from river water across a 740-km2 mountainous catchment, we identify a characteristic spatial land-water fingerprint. Specifically, we find a spatial association of riverine eDNA diversity with RS spectral diversity of terrestrial ecosystems upstream, peaking at a 400 m distance yet still detectable up to a 2.0 km radius. Our findings show that biodiversity patterns in rivers can be linked to the functional diversity of surrounding terrestrial ecosystems and provide a dominant scale at which these linkages are strongest. Such spatially explicit information is necessary for a functional understanding of land-water linkages.

Functional diversity is a critical component driving ecosystem functioning. Spatially explicit data of plant functional traits and diversity are essential for understanding biodiversity effects on ecosystem functioning. Here we retrieved three morphological traits (95th quantile height, leaf area index, foliage height diversity) and three physiological traits (chlorophyll a + b content, specific leaf area, equivalent water thickness) from airborne laser scanning and multispectral Sentinel-2 data, respectively. We found airborne LiDAR-derived parameters correlated well with in-situ plot-level morphological data (R2 ≥ 0.67). For satellite-derived physiological traits, partial least squares regression (PLSR) obtained higher prediction accuracy (R2 = 0.26–0.43, cross-validation with in-situ community-weighted mean (CWM) leaf physiological trait data) than a vegetation index (VI) approach. The remotely-sensed traits were used as input to estimate multi-trait functional diversity (FD) indices in a species-rich subtropical mountainous forest. Finally, we investigated the influence of single-trait CWMs, multi-trait FD indices and environmental variables on remotely-derived aboveground ecosystem carbon stocks (aboveground biomass, AGB) and primary productivity (kernel normalized difference vegetation index, kNDVI). CWMs of all functional traits were significant predictors of AGB and kNDVI, as suggested by the mass-ratio hypothesis. Morphological FD indices were also important predictors of AGB and kNDVI, indicating effects of complementarity in crown architectures. In best-fit multivariate models, the first principal component CWM of morphological traits and that of physiological traits were the most important predictors of AGB and kNDVI, respectively. The FD index of morphological richness was additionally selected in the best-fit models for AGB and kNDVI at ecosystem and landscape scales. Our work highlights the potential of using remotely-sensed functional traits to asses

Remote sensing enhances large-scale biodiversity monitoring by overcoming temporal and spatial limitations of ground-based measurements and allows assessment of multiple plant traits simultaneously. The total set of traits and their variation over time is specific for each individual and can reveal information about the genetic composition of forest communities. Measuring trait variation among individuals of one species continuously across space and time is a key component in monitoring genetic diversity but difficult to achieve with ground-based methods. Remote sensing approaches using imaging spectroscopy can provide high spectral, spatial, and temporal coverage to advance the monitoring of genetic diversity, if sufficient relation between spectral and genetic information can be established. We assessed reflectance spectra from individual Fagus sylvatica L. (European beech) trees acquired across eleven years from 69 flights of the Airborne Prism Experiment (APEX) above the same temperate forest in Switzerland. We derived reflectance spectra of 68 canopy trees and correlated differences in these spectra with genetic differences derived from microsatellite markers among the 68 individuals. We calculated these correlations for different points in time, wavelength regions and relative differences between wavelength regions. High correlations indicate high spectral-genetic similarities. We then tested the influence of environmental variables obtained at temporal scales from days to years on spectral-genetic similarities. We performed an uncertainty propagation of radiance measurements to provide a quality indicator for these correlations. We observed that genetically similar individuals had more similar reflectance spectra, but this varied between wavelength regions and across environmental variables. The short-wave infrared regions of the spectrum, influenced by water absorption, seemed to provide information on the population genetic structure at high temperatures, w

Genetic diversity influences the evolutionary potential of forest trees under changing environmental conditions, thus indirectly the ecosystem services that forests provide. European beech (Fagus sylvatica L.) is a dominant European forest tree species that increasingly suffers from climate change-related die-back. Here, we conducted a systematic literature review of neutral genetic diversity in European beech and created a meta-data set of expected heterozygosity (He) from all past studies providing nuclear microsatellite data. We propose a novel approach, based on population genetic theory and a min–max scaling to make past studies comparable. Using a new microsatellite data set with unprecedented geographic coverage and various re-sampling schemes to mimic common sampling biases, we show the potential and limitations of the scaling approach. The scaled meta-dataset reveals the expected trend of decreasing genetic diversity from glacial refugia across the species range and also supports the hypothesis that different lineages met and admixed north of the European mountain ranges. As a result, we present a map of genetic diversity across the range of European beech which could help to identify seed source populations harboring greater diversity and guide sampling strategies for future genome-wide and functional investigations of genetic variation. Our approach illustrates how to combine information from several nuclear microsatellite data sets to describe patterns of genetic diversity extending beyond the geographic scale or mean number of loci used in each individual study, and thus is a proof-of-concept for synthesizing knowledge from existing studies also in other species.

Plant functional traits can predict community assembly and ecosystem functioning and are thus widely used in global models of vegetation dynamics and land-climate feedbacks. Still, we lack a global understanding of how land and climate affect plant traits. A previous global analysis of six traits observed two main axes of variation: (1) size variation at the organ and plant level and (2) leaf economics balancing leaf persistence against plant growth potential. The orthogonality of these two axes suggests they are differently influenced by environmental drivers. We find that these axes persist in a global dataset of 17 traits across more than 20,000 species. We find a dominant joint effect of climate and soil on trait variation. Additional independent climate effects are also observed across most traits, whereas independent soil effects are almost exclusively observed for economics traits. Variation in size traits correlates well with a latitudinal gradient related to water or energy limitation. In contrast, variation in economics traits is better explained by interactions of climate with soil fertility. These findings have the potential to improve our understanding of biodiversity patterns and our predictions of climate change impacts on biogeochemical cycles. The authors investigate the broad-scale climatological and soil properties that co-vary with major axes of plant functional traits. They find that variation in plant size is attributed to latitudinal gradients in water or energy limitation, while variation in leaf economics traits is attributed to both climate and soil fertility including their interaction.

Plant functional traits can predict community assembly and ecosystem functioning and are thus widely used in global models of vegetation dynamics and land–climate feedbacks. Still, we lack a global understanding of how land and climate affect plant traits. A previous global analysis of six traits observed two main axes of variation: (1) size variation at the organ and plant level and (2) leaf economics balancing leaf persistence against plant growth potential. The orthogonality of these two axes suggests they are differently influenced by environmental drivers. We find that these axes persist in a global dataset of 17 traits across more than 20,000 species. We find a dominant joint effect of climate and soil on trait variation. Additional independent climate effects are also observed across most traits, whereas independent soil effects are almost exclusively observed for economics traits. Variation in size traits correlates well with a latitudinal gradient related to water or energy limitation. In contrast, variation in economics traits is better explained by interactions of climate with soil fertility. These findings have the potential to improve our understanding of biodiversity patterns and our predictions of climate change impacts on biogeochemical cycles.

Landscape structure is as much a driver as a product of environmental and biological interactions and it manifests as scale-specific, but also as multi-scale patterns. Multi-scale structure affects processes on smaller and larger scales and its detection requires information from different scales to be combined. Herein, we propose a novel method to quantify multi-scale spatial structural diversity in continuous remote sensing data. We combined information from different extents with an empirical Bayesian model and we applied a new entropy metric and a value co-occurrence approach to capture heterogeneity. We tested this method on Normalized Difference Vegetation Index data in northern Eurasia and on simulated data and we also tested the effect of coarser pixel resolution. We find that multi-scale structural diversity can reveal itself as patches and linear landscape features, which persist or become apparent across spatial scales. Multi-scale line features reveal the transition zones between spatial regimes and multi-scale patches reveal those areas within transition zones where values are most different from each other. Additionally, spatial regimes themselves can be distinguished. We also find the choice of scale need not be informed by typical length-scales, which makes the method easy to implement. The proposed multi-scale approach can be applied to other contexts, following the roadmap we pave out in this study and using the tools available in the accompanying R package StrucDiv.

Games as a didactic tool (e. g., puzzles) are gaining recognition in environmental education to promote skill development, but also to develop a specific understanding of the natural world. However, a children’s puzzle containing representations of nature may unwillingly lead to “misconceptions” of biodiversity themes and processes, and an over-simplification of the relationship between people and nature. To solve this problem, positive connotations of biodiversity may prompt a conceptual change to a more nuanced, multifaceted conception of biodiversity.

Observing functional diversity continuously in time and space using satellite imagery forms the basis for studying impact, interactions, and feedback of environmental change mechanisms on ecosystems and biodiversity globally. Functional diversity of plant traits links ecosystem functioning and biodiversity. This work presents an approach to map and quantify functional diversity of physiological forest traits derived from 20 m Sentinel-2 data in a temperate forest ecosystem. We used two complementary data sources, namely high-resolution, as well as spatially resampled airborne imaging spectroscopy data and Sentinel-2 data, to ensure our methods support consistently mapping functional diversity from space. We retrieved three physiological traits related to forest health, stress, and potential productivity, namely chlorophyll, carotenoid, and water content, from airborne imaging spectroscopy and Sentinel-2 data using corresponding spectral indices as proxies. We analyzed changes in two functional diversity metrics, namely functional richness and divergence, at different spatial resolutions. Both functional diversity metrics depend on the size and number of pixels to derive functional diversity as a function of distance, leading to different interpretations. When mapping functional diversity using Sentinel-2 data, small-scale patterns <1.1 ha were no longer visible, implying a minimum calculation area with 60 m radius recommended for retrieval of functional diversity metrics. The spectrally convolved and spatially resampled airborne spectroscopy data and the native Sentinel-2 data were correlated with r = 0.747 for functional richness and r = 0.709 for divergence in a 3.1 ha neighborhood. Functional richness was more affected by the differences in trait maps between the acquisitions resulting from effects in illumination and topography compared with functional divergence. Further differences could be explained by varying illumination/observation effects and phenological

Plant functional traits can predict community assembly and ecosystem functioning and are thus widely used in global models of vegetation dynamics and land–climate feedbacks. Still, we lack a global understanding of how land and climate affect plant traits. A previous global analysis of six traits observed two main axes of variation: (1) size variation at the organ and plant level and (2) leaf economics balancing leaf persistence against plant growth potential. The orthogonality of these two axes suggests they are differently influenced by environmental drivers. We find that these axes persist in a global dataset of 17 traits across more than 20,000 species. We find a dominant joint effect of climate and soil on trait variation. Additional independent climate effects are also observed across most traits, whereas independent soil effects are almost exclusively observed for economics traits. Variation in size traits correlates well with a latitudinal gradient related to water or energy limitation. In contrast, variation in economics traits is better explained by interactions of climate with soil fertility. These findings have the potential to improve our understanding of biodiversity patterns and our predictions of climate change impacts on biogeochemical cycles.

The benefits of composite products are well known to users of data from optical sensors: cloud-cleared composite reflectance or index products are commonly used as an analysis-ready data (ARD) layer. No analogous composite products are currently in widespread use that is based on spaceborne radar satellite backscatter signals. Here, we present a methodology to produce wide-area ARD composite backscatter images. They build on the existing heritage of geometrically and radiometrically terrain corrected level 1 products. By combining backscatter measurements of a single region seen from multiple satellite tracks (incl. ascending and descending), they are able to provide wide-area coverage with low latency. The analysis-ready composite backscatter maps provide flattened backscatter estimates that are geometrically and radiometrically corrected for slope effects. A mask layer annotating the local quality of the composite resolution is introduced. Multiple tracks are combined by weighting each observation by its local resolution, generating seamless wide-area backscatter maps suitable for applications ranging from wet snow monitoring to land cover classification or short-term change detection.

Increasing evidence suggests that remotely sensed spectral diversity is linked to plant species richness. However, a conflicting spectral diversity–biodiversity relationship in grasslands has been found in previous studies. In particular, it remains unclear how well the spectral diversity–biodiversity relationship holds in naturally assembled species-rich grasslands. To address the linkage between spectral diversity and plant species richness in a species-rich alpine grassland ecosystem, we investigated (i) the trade-off between spectral and spatial resolution in remote sensing data; (ii) the suitability of three different spectral metrics to describe spectral diversity (coefficient of variation, convex hull volume and spectral species richness) and (iii) the importance of confounding effects of live plant biomass, dead plant biomass and plant life forms on the spectral diversity–biodiversity relationship. We addressed these questions using remote sensing data collected with consumer-grade cameras with four spectral bands and 10 cm spatial resolution on an unmanned aerial vehicle (UAV), airborne imaging spectrometer data (AVIRIS-NG) with 372 bands and 2.5 m spatial resolution, and a fused data product of both datasets. Our findings suggest that a fused dataset can cope with the requirement of both high spatial- and spectral resolution to remotely measure biodiversity. However, in contrast to several previous studies, we found a negative correlation between plant species richness and spectral metrics based on the spectral information content (i.e. spectral complexity). The spectral diversity calculated based on the spectral complexity was sensitive to live and dead plant biomass. Overall, our results suggest that remote sensing of plant species diversity requires a high spatial resolution, the use of classification-based spectral metrics, such as spectral species richness, and awareness of confounding factors (e.g. plant biomass), which may be ecosystem specific.

Plant functional traits can predict community assembly and ecosystem functioning and are thus widely used in global models of vegetation dynamics and land-climate feedbacks. Still, we lack a global understanding of how land and climate affect plant traits. A previous global analysis of six traits observed two main axes of variation: (1) size variation at the organ and plant level and (2) leaf economics balancing leaf persistence against plant growth potential. The orthogonality of these two axes suggests they are differently influenced by environmental drivers. We find that these axes persist in a global dataset of 17 traits across more than 20,000 species. We find a dominant joint effect of climate and soil on trait variation. Additional independent climate effects are also observed across most traits, whereas independent soil effects are almost exclusively observed for economics traits. Variation in size traits correlates well with a latitudinal gradient related to water or energy limitation. In contrast, variation in economics traits is better explained by interactions of climate with soil fertility. These findings have the potential to improve our understanding of biodiversity patterns and our predictions of climate change impacts on biogeochemical cycles.

Ecosystem heterogeneity has been widely recognized as a key ecological indicator of several ecological functions, diversity patterns and change, metapopulation dynamics, population connectivity or gene flow. In this paper, we present a new R package—rasterdiv—to calculate heterogeneity indices based on remotely sensed data. We also provide an ecological application at the landscape scale and demonstrate its power in revealing potentially hidden heterogeneity patterns. The rasterdiv package allows calculating multiple indices, robustly rooted in Information Theory, and based on reproducible open-source algorithms.