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The evolution and mechanisms of tectonic subsidence in the Xisha area are poorly investigated, especially the spatiotemporal distribution features and reasons for the variations in tectonic subsidence. In this study, multi-channel seismic data and stratigraphic and lithologic features of wells are used to examine tectonic subsidence in the Xisha area from the Paleogene to Quaternary. The largest tectonic subsidence in the Xisha area is located in the Changchang Depression, with a maximum subsidence of 5.4 km, while the smallest tectonic subsidence is located on the Guangle Uplift and Xisha Uplift, which are close to 1.0 km and 1.5 km, respectively. Two rapid tectonic subsidence phases were mainly in the Oligocene, and from Middle to Late Miocene, with maximum subsidence rates of 0.45 m/ky and 0.32 m/ky, respectively. Five phases for the tectonic subsidence are proposed since the Paleogene based on our data. (1) The slow subsidence phase during the Eocene (53.5–32 Ma) was due to the transchronicity of the basement in the pro-rifted stage. (2) The rapid subsidence phase was common in the south and north margins of Qiongdongnan Basin, because of the faults triggered by the inherited stretched and thinned of crust in the Oligocene from 32 to 23.3 Ma. (3) The interim phase followed the rapid subsidence phase was in the Early Miocene (23.3–15.5 Ma) and marked the end of the rifted stage. (4) The accelerated rise phase started from the Middle Miocene (15.5 Ma) to the Late Miocene (5.5 Ma), and the reversal of the Red River Fault Zone may be tied to the acceleration of the tectonic subsidence. (5) The transitional phase started in the Pliocene (5.5 Ma) and lasts to the present. As the Red River Fault Zone changed from sinistral to dextral movement, the stress field of the study area has changed. Our results are helpful to better understand the spatiotemporal coupling relationship between tectonic subsidence and regional geological evolution in the Xisha area, South China Sea. [ABSTRACT FROM AUTHOR]