200 results on '"Shigui Ruan"'
Search Results
2. Estimating asymptomatic, undetected and total cases for the COVID-19 outbreak in Wuhan: a mathematical modeling study
- Author
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Xi Huo, Jing Chen, and Shigui Ruan
- Subjects
COVID-19 ,Wuhan ,Asymptomatic cases ,Undetected cases ,Total number of infections ,Mathematical modeling ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background The COVID-19 outbreak in Wuhan started in December 2019 and was under control by the end of March 2020 with a total of 50,006 confirmed cases by the implementation of a series of nonpharmaceutical interventions (NPIs) including unprecedented lockdown of the city. This study analyzes the complete outbreak data from Wuhan, assesses the impact of these public health interventions, and estimates the asymptomatic, undetected and total cases for the COVID-19 outbreak in Wuhan. Methods By taking different stages of the outbreak into account, we developed a time-dependent compartmental model to describe the dynamics of disease transmission and case detection and reporting. Model coefficients were parameterized by using the reported cases and following key events and escalated control strategies. Then the model was used to calibrate the complete outbreak data by using the Monte Carlo Markov Chain (MCMC) method. Finally we used the model to estimate asymptomatic and undetected cases and approximate the overall antibody prevalence level. Results We found that the transmission rate between Jan 24 and Feb 1, 2020, was twice as large as that before the lockdown on Jan 23 and 67.6% (95% CI [0.584,0.759]) of detectable infections occurred during this period. Based on the reported estimates that around 20% of infections were asymptomatic and their transmission ability was about 70% of symptomatic ones, we estimated that there were about 14,448 asymptomatic and undetected cases (95% CI [12,364,23,254]), which yields an estimate of a total of 64,454 infected cases (95% CI [62,370,73,260]), and the overall antibody prevalence level in the population of Wuhan was 0.745% (95% CI [0.693%,0.814%]) by March 31, 2020. Conclusions We conclude that the control of the COVID-19 outbreak in Wuhan was achieved via the enforcement of a combination of multiple NPIs: the lockdown on Jan 23, the stay-at-home order on Feb 2, the massive isolation of all symptomatic individuals via newly constructed special shelter hospitals on Feb 6, and the large scale screening process on Feb 18. Our results indicate that the population in Wuhan is far away from establishing herd immunity and provide insights for other affected countries and regions in designing control strategies and planing vaccination programs.
- Published
- 2021
- Full Text
- View/download PDF
3. Modelling homosexual and heterosexual transmissions of hepatitis B virus in China
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Min Lu, Yaqin Shu, Jicai Huang, Shigui Ruan, Xinan Zhang, and Lan Zou
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hepatitis b virus ,heterosexual transmission ,homosexual transmission ,mathematical modelling ,basic reproduction number ,sensitivity analysis ,Environmental sciences ,GE1-350 ,Biology (General) ,QH301-705.5 - Abstract
Studies have shown that sexual transmission, both heterosexually and homosexually, is one of the main ways of HBV infection. Based on this fact, we propose a mathematical model to study the sexual transmission of HBV among adults by classifying adults into men and women and considering both same-sex and opposite-sex transmissions of HBV in adults. Firstly, we calculate the basic reproduction number $ R_{0} $ and the disease-free equilibrium point $ E_{0} $ . Secondly, by analysing the sensitivity of $ R_{0} $ in terms of model parameters, we find that the infection rate among people who have same-sex partners, the frequency of homosexual contact and the immunity rate of adults play important roles in the transmission of HBV. Moreover, we use our model to fit the reported data in China and forecast the trend of hepatitis B. Our results demonstrate that popularizing the basic knowledge of HBV among residents, advocating healthy and reasonable sexual life style, reducing the number of adult carriers, and increasing the immunization rate of adults are effective measures to prevent and control hepatitis B.
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- 2021
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4. Monitoring Land Degradation through Vegetation Dynamics Mathematical Modeling: Case of Jornada Basin (in the U.S.)
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Zheng Chen, Jieyu Liu, Zhonghua Qian, Li Li, Zhiseng Zhang, Guolin Feng, Shigui Ruan, and Guiquan Sun
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arid lands ,climate change ,vegetation–climate feedback ,land degradation ,Science - Abstract
Arid ecosystems are known to be sensitive to climate change. The Jornada Basin in the USA, as one representative of arid land, has suffered from land degradation in recent decades. In order to disentangle the climate–vegetation feedback, we analyzed the vegetation dynamics under the effects of climate change via a mathematical model based on the reaction–diffusion mechanism. Using this model, we conducted a sensitive analysis of climate factors and concluded that the ecosystem might experience a catastrophic shift with the climatic deterioration. We considered the non-local interaction term to explain the competition among plants. Additionally, the PLR (power law range) metric was used to quantify the extent of the degradation and to compare the results of the vegetation patterns from the remote sensing data and the simulations. From the results, this model could simulate the trends of land degradation in this area. We found that the land degradation could be mainly attributed to climate changes in recent years. This approach suggests that vegetation patterns can provide hints as to whether the ecosystem is approaching desertification. These results can help with mapping vulnerable arid areas around the world through model simulation and satellite images.
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- 2023
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5. Modeling the effect of antibiotic exposure on the transmission of methicillin-resistant Staphylococcus aureus in hospitals with environmental contamination
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Qimin Huang, Mary Ann Horn, and Shigui Ruan
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methicillin-resistant staphylococcus aureus ,antibiotic exposure ,environmental contamination ,deterministic and stochastic models ,basic reproduction number ,persistence ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
In this paper both deterministic and stochastic models are developed to explore the roles that antibiotic exposure and environmental contamination play in the spread of antibiotic-resistant bacteria, such as methicillin-resistant Staphylococcus aureus (MRSA), in hospitals. Uncolonized patients without or with antibiotic exposure, colonized patients without or with antibiotic exposure, uncontaminated or contaminated healthcare workers, and free-living bacteria are included in the models. Under the assumption that there is no admission of the colonized patients, the basic reproduction number $R_0$ is calculated. It is shown that when $R_0 < 1$, the infection-free equilibrium is globally asymptotically stable; when $R_0>1$, the infection is uniformly persistent. Numerical simulations and sensitivity analysis show that environmental cleaning is a critical intervention, and hospitals should use antibiotics properly and as little as possible. The rapid and efficient treatment of colonized patients, especially those with antibiotic exposure, is key in controlling MRSA infections. Screening and isolating colonized patients at admission, and improving compliance with hand hygiene are also important control strategies.
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- 2019
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6. Modeling the seasonality of Methicillin-resistant Staphylococcus aureus infections in hospitals with environmental contamination
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Qimin Huang, Xi Huo, Darlene Miller, and Shigui Ruan
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Seasonality ,basic reproduction number ,antibiotic exposure ,environmental contamination ,persistent ,Environmental sciences ,GE1-350 ,Biology (General) ,QH301-705.5 - Abstract
A deterministic mathematical model with periodic antibiotic prescribing rate is constructed to study the seasonality of Methicillin-resistant Staphylococcus aureus (MRSA) infections taking antibiotic exposure and environmental contamination into consideration. The basic reproduction number $ R_0 $ for the periodic model is calculated under the assumption that there are only uncolonized patients with antibiotic exposure at admission. Sensitivity analysis of $ R_0 $ with respect to some essential parameters is performed. It is shown that the infection would go to extinction if the basic reproduction number is less than unity and would persist if it is greater than unity. Numerical simulations indicate that environmental cleaning is the most important intervention to control the infection, which emphasizes the effect of environmental contamination in MRSA infections. It is also important to highlight the importance of effective antimicrobial stewardship programmes, increase active screening at admission and subsequent isolation of positive cases, and treat patients quickly and efficiently.
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- 2019
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7. Spatiotemporal epidemic models for rabies among animals
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Shigui Ruan
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Rabies is a serious concern to public health and wildlife management worldwide. Over the last three decades, various mathematical models have been proposed to study the transmission dynamics of rabies. In this paper we provide a mini-review on some reaction-diffusion models describing the spatial spread of rabies among animals. More specifically, we introduce the susceptible-exposed-infectious models for the spatial transmission of rabies among foxes (Murray et al., 1986), the spatiotemporal epidemic model for rabies among raccoons (Neilan and Lenhart, 2011), the diffusive rabies model for skunk and bat interactions (Bonchering et al., 2012), and the reaction-diffusion model for rabies among dogs (Zhang et al., 2012). Numerical simulations on the spatiotemporal dynamics of these models from these papers are presented.
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- 2017
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8. Modeling Nosocomial Infections of Methicillin-Resistant Staphylococcus aureus with Environment Contamination
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Lei Wang and Shigui Ruan
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Medicine ,Science - Abstract
Abstract In this work, we investigate the role of environmental contamination on the clinical epidemiology of antibiotic-resistant bacteria in hospitals. Methicillin-resistant Staphylococcus aureus (MRSA) is a bacterium that causes infections in different parts of the body. It is tougher to treat than most strains of Staphylococcus aureus or staph, because it is resistant to some commonly used antibiotics. Both deterministic and stochastic models are constructed to describe the transmission characteristics of MRSA in hospital setting. The deterministic epidemic model includes five compartments: colonized and uncolonized patients, contaminated and uncontaminated health care workers (HCWs), and bacterial load in environment. The basic reproduction number R 0 is calculated, and its numerical and sensitivity analysis has been performed to study the asymptotic behavior of the model, and to help identify factors responsible for observed patterns of infections. A stochastic epidemic model with stochastic simulations is also presented to supply a comprehensive analysis of its behavior. Data collected from Beijing Tongren Hospital will be used in the numerical simulations of our model. The results can be used to provide theoretical guidance for designing efficient control measures, such as increasing the hand hygiene compliance of HCWs and disinfection rate of environment, and decreasing the transmission rate between environment and patients and HCWs.
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- 2017
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9. A comparison study of Zika virus outbreaks in French Polynesia, Colombia and the State of Bahia in Brazil
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Daihai He, Daozhou Gao, Yijun Lou, Shi Zhao, and Shigui Ruan
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Medicine ,Science - Abstract
Zika virus (ZIKV) disease outbreaks occurred in French Polynesia in 2013–2014 and in Brazil and Colombia in 2015–2016, respectively. Using our recently developed ZIKV disease model, we simulated the reported ZIKV infection cases from French Polynesia, Colombia and the State of Bahia of Brazil. Moreover, we estimated that the infection attack rates were 78.0% (95% confidence interval (CI): 63.5–86.3%) in French Polynesia which closely matches a previous serological study; 20.8% (95% CI: 1.1–50.0%) in Colombia which suggests that the attack rate was most likely less than 50%; and 32.4% (95% CI: 2.5–94.2%) in the State of Bahia in Brazil which suggests that the attack rate is unidentifiable with monthly data in Bahia. Furthermore, we found that the association of precipitation and ZIKV outbreak was more evident in Colombia than the other two places. These results are helpful for us to understand the possible evolution, to control the on-going outbreaks, to prevent the potential geographic spread, and to study the ecological and epidemiological characteristics of ZIKV.
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- 2017
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10. Bifurcation and temporal periodic patterns in a plant–pollinator model with diffusion and time delay effects
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Jirong Huang, Zhihua Liu, and Shigui Ruan
- Subjects
Unidirectional consumer–resource interaction ,diffusion ,delay ,stability ,Hopfbifurcation ,Environmental sciences ,GE1-350 ,Biology (General) ,QH301-705.5 - Abstract
This paper deals with a plant–pollinator model with diffusion and time delay effects. By considering the distribution of eigenvalues of the corresponding linearized equation, we first study stability of the positive constant steady-state and existence of spatially homogeneous and spatially inhomogeneous periodic solutions are investigated. We then derive an explicit formula for determining the direction and stability of the Hopf bifurcation by applying the normal form theory and the centre manifold reduction for partial functional differential equations. Finally, we present an example and numerical simulations to illustrate the obtained theoretical results.
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- 2017
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11. Special issue: Spatial dynamics for epidemic models with dispersal of organisms and heterogenity of environment
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Guest Editors: Arnaud Ducrot, Shigui Ruan, and Zhi-Cheng Wang
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Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Published
- 2020
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12. Modeling the geographic spread of rabies in China.
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Jing Chen, Lan Zou, Zhen Jin, and Shigui Ruan
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
In order to investigate how the movement of dogs affects the geographically inter-provincial spread of rabies in Mainland China, we propose a multi-patch model to describe the transmission dynamics of rabies between dogs and humans, in which each province is regarded as a patch. In each patch the submodel consists of susceptible, exposed, infectious, and vaccinated subpopulations of both dogs and humans and describes the spread of rabies among dogs and from infectious dogs to humans. The existence of the disease-free equilibrium is discussed, the basic reproduction number is calculated, and the effect of moving rates of dogs between patches on the basic reproduction number is studied. To investigate the rabies virus clades lineages, the two-patch submodel is used to simulate the human rabies data from Guizhou and Guangxi, Hebei and Fujian, and Sichuan and Shaanxi, respectively. It is found that the basic reproduction number of the two-patch model could be larger than one even if the isolated basic reproduction number of each patch is less than one. This indicates that the immigration of dogs may make the disease endemic even if the disease dies out in each isolated patch when there is no immigration. In order to reduce and prevent geographical spread of rabies in China, our results suggest that the management of dog markets and trades needs to be regulated, and transportation of dogs has to be better monitored and under constant surveillance.
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- 2015
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13. Modelling the effects of seasonality and socioeconomic impact on the transmission of rift valley Fever virus.
- Author
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Yanyu Xiao, John C Beier, Robert Stephen Cantrell, Chris Cosner, Donald L DeAngelis, and Shigui Ruan
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Rift Valley fever (RVF) is an important mosquito-borne viral zoonosis in Africa and the Middle East that causes human deaths and significant economic losses due to huge incidences of death and abortion among infected livestock. Outbreaks of RVF are sporadic and associated with both seasonal and socioeconomic effects. Here we propose an almost periodic three-patch model to investigate the transmission dynamics of RVF virus (RVFV) among ruminants with spatial movements. Our findings indicate that, in Northeastern Africa, human activities, including those associated with the Eid al Adha feast, along with a combination of climatic factors such as rainfall level and hydrological variations, contribute to the transmission and dispersal of the disease pathogen. Moreover, sporadic outbreaks may occur when the two events occur together: 1) abundant livestock are recruited into areas at risk from RVF due to the demand for the religious festival and 2) abundant numbers of mosquitoes emerge. These two factors have been shown to have impacts on the severity of RVF outbreaks. Our numerical results present the transmission dynamics of the disease pathogen over both short and long periods of time, particularly during the festival time. Further, we investigate the impact on patterns of disease outbreaks in each patch brought by festival- and seasonal-driven factors, such as the number of livestock imported daily, the animal transportation speed from patch to patch, and the death rate induced by ceremonial sacrifices. In addition, our simulations show that when the time for festival preparation starts earlier than usual, the risk of massive disease outbreaks rises, particularly in patch 3 (the place where the religious ceremony will be held).
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- 2015
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14. Modeling the spread of methicillin-resistant Staphylococcus aureus in nursing homes for elderly.
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Farida Chamchod and Shigui Ruan
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Medicine ,Science - Abstract
Methicillin-resistant Staphylococcus aureus (MRSA) is endemic in many hospital settings, including nursing homes. It is an important nosocomial pathogen that causes mortality and an economic burden to patients, hospitals, and the community. The epidemiology of the bacteria in nursing homes is both hospital- and community-like. Transmission occurs via hands of health care workers (HCWs) and direct contacts among residents during social activities. In this work, mathematical modeling in both deterministic and stochastic frameworks is used to study dissemination of MRSA among residents and HCWs, persistence and prevalence of MRSA in a population, and possible means of controlling the spread of this pathogen in nursing homes. The model predicts that: (i) without strict screening and decolonization of colonized individuals at admission, MRSA may persist; (ii) decolonization of colonized residents, improving hand hygiene in both residents and HCWs, reducing the duration of contamination of HCWs, and decreasing the resident∶staff ratio are possible control strategies; (iii) the mean time that a resident remains susceptible since admission may be prolonged by screening and decolonization treatment in colonized individuals; (iv) in the stochastic framework, the total number of colonized residents varies and may increase when the admission of colonized residents, the duration of colonization, the average number of contacts among residents, or the average number of contacts that each resident requires from HCWs increases; (v) an introduction of a colonized individual into an MRSA-free nursing home has a much higher probability of leading to a major outbreak taking off than an introduction of a contaminated HCW.
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- 2012
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15. Efficacy of infection control interventions in reducing the spread of multidrug-resistant organisms in the hospital setting.
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Erika M C D'Agata, Mary Ann Horn, Shigui Ruan, Glenn F Webb, and Joanna R Wares
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Medicine ,Science - Abstract
Multidrug-resistant organisms (MDRO) continue to spread in hospitals globally, but the population-level impact of recommended preventive strategies and the relative benefit of individual strategies targeting all MDRO in the hospital setting are unclear. To explore the dynamics of MDRO transmission in the hospital, we develop a model extending data from clinical individual-level studies to quantify the impact of hand hygiene, contact precautions, reducing antimicrobial exposure and screening surveillance cultures in decreasing the prevalence of MDRO colonization and infection. The effect of an ongoing increase in the influx of patients colonized with MDRO into the hospital setting is also quantified. We find that most recommended strategies have substantial effect in decreasing the prevalence of MDRO over time. However, screening for asymptomatic MDRO colonization among patients who are not receiving antimicrobials is of minimal value in reducing the spread of MDRO.
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- 2012
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16. Analysis of rabies in China: transmission dynamics and control.
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Juan Zhang, Zhen Jin, Gui-Quan Sun, Tao Zhou, and Shigui Ruan
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Medicine ,Science - Abstract
Human rabies is one of the major public-health problems in China. The number of human rabies cases has increased dramatically in the last 15 years, partially due to the poor understanding of the transmission dynamics of rabies and the lack of effective control measures of the disease. In this article, in order to explore effective control and prevention measures we propose a deterministic model to study the transmission dynamics of rabies in China. The model consists of susceptible, exposed, infectious, and recovered subpopulations of both dogs and humans and describes the spread of rabies among dogs and from infectious dogs to humans. The model simulations agree with the human rabies data reported by the Chinese Ministry of Health. We estimate that the basic reproduction number R₀ = 2 for the rabies transmission in China and predict that the number of the human rabies is decreasing but may reach another peak around 2030. We also perform some sensitivity analysis of R₀ in terms of the model parameters and compare the effects of culling and immunization of dogs. Our study demonstrates that (i) reducing dog birth rate and increasing dog immunization coverage rate are the most effective methods for controlling rabies in China; and (ii) large scale culling of susceptible dogs can be replaced by immunization of them.
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- 2011
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17. The impact of different antibiotic regimens on the emergence of antimicrobial-resistant bacteria.
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Erika M C D'Agata, Myrielle Dupont-Rouzeyrol, Pierre Magal, Damien Olivier, and Shigui Ruan
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Medicine ,Science - Abstract
The emergence and ongoing spread of antimicrobial-resistant bacteria is a major public health threat. Infections caused by antimicrobial-resistant bacteria are associated with substantially higher rates of morbidity and mortality compared to infections caused by antimicrobial-susceptible bacteria. The emergence and spread of these bacteria is complex and requires incorporating numerous interrelated factors which clinical studies cannot adequately address.A model is created which incorporates several key factors contributing to the emergence and spread of resistant bacteria including the effects of the immune system, acquisition of resistance genes and antimicrobial exposure. The model identifies key strategies which would limit the emergence of antimicrobial-resistant bacterial strains. Specifically, the simulations show that early initiation of antimicrobial therapy and combination therapy with two antibiotics prevents the emergence of resistant bacteria, whereas shorter courses of therapy and sequential administration of antibiotics promote the emergence of resistant strains.The principal findings suggest that (i) shorter lengths of antibiotic therapy and early interruption of antibiotic therapy provide an advantage for the resistant strains, (ii) combination therapy with two antibiotics prevents the emergence of resistance strains in contrast to sequential antibiotic therapy, and (iii) early initiation of antibiotics is among the most important factors preventing the emergence of resistant strains. These findings provide new insights into strategies aimed at optimizing the administration of antimicrobials for the treatment of infections and the prevention of the emergence of antimicrobial resistance.
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- 2008
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18. Periodic dynamics of a single species model with seasonal Michaelis-Menten type harvesting
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Xiaomei Feng, Yunfeng Liu, Shigui Ruan, and Jianshe Yu
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Applied Mathematics ,Analysis - Published
- 2023
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19. Dynamics and asymptotic profiles of a nonlocal dispersal SIS epidemic model with bilinear incidence and Neumann boundary conditions
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Yan-Xia Feng, Wan-Tong Li, Shigui Ruan, and Fei-Ying Yang
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Applied Mathematics ,Analysis - Published
- 2022
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20. Periodic solutions of partial functional differential equations
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Qiuyi Su and Shigui Ruan
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010101 applied mathematics ,Algebra and Number Theory ,Differential equation ,0103 physical sciences ,Mathematical analysis ,Discrete Mathematics and Combinatorics ,Geometry and Topology ,0101 mathematics ,010301 acoustics ,01 natural sciences ,Analysis ,Mathematics - Abstract
In this paper we study the existence of periodic solutions to the partial functional differential equation { d y ( t ) d t = B y ( t ) + L ^ ( y t ) + f ( t , y t ) , ∀ t ≥ 0 , y 0 = φ ∈ C B . \begin{equation*} \left \{ \begin {array}{l} \frac {dy(t)}{dt}=By(t)+\hat {L}(y_{t})+f(t,y_{t}), \;\forall t\geq 0,\\ y_{0}=\varphi \in C_{B}. \end{array} \right . \end{equation*} where B : Y → Y B: Y \rightarrow Y is a Hille-Yosida operator on a Banach space Y Y . For C B ≔ { φ ∈ C ( [ − r , 0 ] ; Y ) : φ ( 0 ) ∈ D ( B ) ¯ } C_{B}≔\{\varphi \in C([-r,0];Y): \varphi (0)\in \overline {D(B)}\} , y t ∈ C B y_{t}\in C_{B} is defined by y t ( θ ) = y ( t + θ ) y_{t}(\theta )=y(t+\theta ) , θ ∈ [ − r , 0 ] \theta \in [-r,0] , L ^ : C B → Y \hat {L}: C_{B}\rightarrow Y is a bounded linear operator, and f : R × C B → Y f:\mathbb {R}\times C_{B}\rightarrow Y is a continuous map and is T T -periodic in the time variable t t . Sufficient conditions on B B , L ^ \hat {L} and f ( t , y t ) f(t,y_{t}) are given to ensure the existence of T T -periodic solutions. The results then are applied to establish the existence of periodic solutions in a reaction-diffusion equation with time delay and the diffusive Nicholson’s blowflies equation.
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- 2021
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21. Estimating asymptomatic, undetected and total cases for the COVID-19 outbreak in Wuhan: a mathematical modeling study
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Shigui Ruan, Xi Huo, and Jing Chen
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Wuhan ,medicine.medical_specialty ,China ,Coronavirus disease 2019 (COVID-19) ,Population ,Infectious and parasitic diseases ,RC109-216 ,030204 cardiovascular system & hematology ,Total number of infections ,Asymptomatic ,law.invention ,Herd immunity ,Disease Outbreaks ,03 medical and health sciences ,0302 clinical medicine ,law ,medicine ,Humans ,030212 general & internal medicine ,education ,education.field_of_study ,Undetected cases ,business.industry ,SARS-CoV-2 ,Outbreak ,COVID-19 ,Models, Theoretical ,Markov Chains ,Infectious Diseases ,Transmission (mechanics) ,Tropical medicine ,Communicable Disease Control ,Asymptomatic cases ,Mathematical modeling ,medicine.symptom ,business ,Disease transmission ,Monte Carlo Method ,Demography ,Research Article - Abstract
Background The COVID-19 outbreak in Wuhan started in December 2019 and was under control by the end of March 2020 with a total of 50,006 confirmed cases by the implementation of a series of nonpharmaceutical interventions (NPIs) including unprecedented lockdown of the city. This study analyzes the complete outbreak data from Wuhan, assesses the impact of these public health interventions, and estimates the asymptomatic, undetected and total cases for the COVID-19 outbreak in Wuhan. Methods By taking different stages of the outbreak into account, we developed a time-dependent compartmental model to describe the dynamics of disease transmission and case detection and reporting. Model coefficients were parameterized by using the reported cases and following key events and escalated control strategies. Then the model was used to calibrate the complete outbreak data by using the Monte Carlo Markov Chain (MCMC) method. Finally we used the model to estimate asymptomatic and undetected cases and approximate the overall antibody prevalence level. Results We found that the transmission rate between Jan 24 and Feb 1, 2020, was twice as large as that before the lockdown on Jan 23 and 67.6% (95% CI [0.584,0.759]) of detectable infections occurred during this period. Based on the reported estimates that around 20% of infections were asymptomatic and their transmission ability was about 70% of symptomatic ones, we estimated that there were about 14,448 asymptomatic and undetected cases (95% CI [12,364,23,254]), which yields an estimate of a total of 64,454 infected cases (95% CI [62,370,73,260]), and the overall antibody prevalence level in the population of Wuhan was 0.745% (95% CI [0.693%,0.814%]) by March 31, 2020. Conclusions We conclude that the control of the COVID-19 outbreak in Wuhan was achieved via the enforcement of a combination of multiple NPIs: the lockdown on Jan 23, the stay-at-home order on Feb 2, the massive isolation of all symptomatic individuals via newly constructed special shelter hospitals on Feb 6, and the large scale screening process on Feb 18. Our results indicate that the population in Wuhan is far away from establishing herd immunity and provide insights for other affected countries and regions in designing control strategies and planing vaccination programs.
- Published
- 2021
22. Nonlinear age-structured population models with nonlocal diffusion and nonlocal boundary conditions
- Author
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Hao Kang and Shigui Ruan
- Subjects
Semigroup ,Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,Spectrum (functional analysis) ,Fixed-point theorem ,01 natural sciences ,010101 applied mathematics ,Nonlinear system ,Infinitesimal generator ,0101 mathematics ,Constant (mathematics) ,Analysis ,Linear equation ,Mathematics ,Resolvent - Abstract
In this paper, we develop some basic theory for age-structured population models with nonlocal diffusion and nonlocal boundary conditions. We first apply the theory of integrated semigroups and non-densely defined operators to a linear equation, study the spectrum, and analyze the asymptotic behavior via asynchronous exponential growth. Then we consider a semilinear equation with nonlocal diffusion and nonlocal boundary condition, use the method of characteristic lines to find the resolvent of the infinitesimal generator and the variation of constant formula, apply Krasnoselskii's fixed point theorem to obtain the existence of nontrivial steady states, and establish the stability of steady states. Finally we generalize these results to a nonlinear equation with nonlocal diffusion and nonlocal boundary condition.
- Published
- 2021
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23. Relaxation Oscillations and the Entry-Exit Function in Multidimensional Slow-Fast Systems
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Shigui Ruan and Ting-Hao Hsu
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Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,Function (mathematics) ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,01 natural sciences ,010101 applied mathematics ,Computational Mathematics ,Relaxation (physics) ,Turning point ,0101 mathematics ,Analysis ,Mathematics ,Mathematical physics ,Entry exit - Abstract
For a slow-fast system of the form $\dot{p}=\epsilon f(p,z,\epsilon)+h(p,z,\epsilon)$, $\dot{z}=g(p,z,\epsilon)$ for $(p,z)\in \mathbb R^n\times \mathbb R^m$, we consider the scenario that the syst...
- Published
- 2021
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24. Global dynamics of a predator-prey system with density-dependent mortality and ratio-dependent functional response
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Shigui Ruan, Zhikun She, and Xin Jiang
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Cusp (singularity) ,Hopf bifurcation ,Applied Mathematics ,010102 general mathematics ,Dynamics (mechanics) ,Degenerate energy levels ,Codimension ,01 natural sciences ,010101 applied mathematics ,symbols.namesake ,symbols ,Discrete Mathematics and Combinatorics ,Homoclinic bifurcation ,Bogdanov–Takens bifurcation ,Statistical physics ,0101 mathematics ,Bifurcation ,Mathematics - Abstract
In this paper, we study the global dynamics of a density-dependent predator-prey system with ratio-dependent functional response. The main features and challenges are that the origin of this model is a degenerate equilibrium of higher order and there are multiple positive equilibria. Firstly, local qualitative behavior of the system around the origin is explicitly described. Then, based on the dynamics around the origin and other equilibria, global qualitative analysis of the model is carried out. Finally, the existence of Bogdanov-Takens bifurcation (cusp case) of codimension two is analyzed. This shows that the system undergoes various bifurcation phenomena, including saddle-node bifurcation, Hopf bifurcation, and homoclinic bifurcation along with different topological sectors near the degenerate origin. Numerical simulations are presented to illustrate the theoretical results.
- Published
- 2021
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25. Nonlinear dynamics in tumor-immune system interaction models with delays
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Shigui Ruan
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Hopf bifurcation ,Computer science ,Quantitative Biology::Tissues and Organs ,Applied Mathematics ,010102 general mathematics ,Dynamics (mechanics) ,Tumor cells ,Interaction model ,Delay differential equation ,01 natural sciences ,Stability (probability) ,Quantitative Biology::Cell Behavior ,010101 applied mathematics ,Differential equation models ,Nonlinear system ,symbols.namesake ,symbols ,Discrete Mathematics and Combinatorics ,Statistical physics ,0101 mathematics - Abstract
In this paper, we review some recent results on the nonlinear dynamics of delayed differential equation models describing the interaction between tumor cells and effector cells of the immune system, in which the delays represent times necessary for molecule production, proliferation, differentiation of cells, transport, etc. First we consider a tumor-immune system interaction model with a single delay and present results on the existence and local stability of equilibria as well as the existence of Hopf bifurcation in the model when the delay varies. Second we investigate a tumor-immune system interaction model with two delays and show that the model undergoes various possible bifurcations including Hopf, Bautin, Fold-Hopf (zero-Hopf), and Hopf-Hopf bifurcations. Finally we discuss a tumor-immune system interaction model with three delays and demonstrate that the model exhibits more complex behaviors including chaos. Numerical simulations are provided to illustrate the nonlinear dynamics of the delayed tumor-immune system interaction models. More interesting issues and questions on modeling and analyzing tumor-immune dynamics are given in the discussion section.
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- 2021
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26. Modelling homosexual and heterosexual transmissions of hepatitis B virus in China
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Jicai Huang, Shigui Ruan, Yaqin Shu, Xinan Zhang, Min Lu, and Lan Zou
- Subjects
Adult ,Male ,China ,Hepatitis B virus ,Sexual transmission ,QH301-705.5 ,Biology ,medicine.disease_cause ,Models, Biological ,01 natural sciences ,Sexual and Gender Minorities ,sensitivity analysis ,basic reproduction number ,medicine ,Humans ,GE1-350 ,mathematical modelling ,homosexual transmission ,Biology (General) ,0101 mathematics ,Heterosexuality ,Ecology, Evolution, Behavior and Systematics ,Ecology ,heterosexual transmission ,010102 general mathematics ,Virology ,Heterosexual transmission ,Environmental sciences ,010101 applied mathematics ,Female ,Basic reproduction number - Abstract
Studies have shown that sexual transmission, both heterosexually and homosexually, is one of the main ways of HBV infection. Based on this fact, we propose a mathematical model to study the sexual transmission of HBV among adults by classifying adults into men and women and considering both same-sex and opposite-sex transmissions of HBV in adults. Firstly, we calculate the basic reproduction number $ R_{0} $ and the disease-free equilibrium point $ E_{0} $ . Secondly, by analysing the sensitivity of $ R_{0} $ in terms of model parameters, we find that the infection rate among people who have same-sex partners, the frequency of homosexual contact and the immunity rate of adults play important roles in the transmission of HBV. Moreover, we use our model to fit the reported data in China and forecast the trend of hepatitis B. Our results demonstrate that popularizing the basic knowledge of HBV among residents, advocating healthy and reasonable sexual life style, reducing the number of adult carriers, and increasing the immunization rate of adults are effective measures to prevent and control hepatitis B.
- Published
- 2021
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- View/download PDF
27. Age-Structured Population Dynamics with Nonlocal Diffusion
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Hao Kang, Shigui Ruan, and Xiao Yu
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35K90 ,Population ,Semigroup theory ,Age structure ,92D25 ,01 natural sciences ,Article ,Infinitesimal generator ,Spectrum theory ,Statistical physics ,0101 mathematics ,Diffusion (business) ,education ,Mathematics ,education.field_of_study ,Partial differential equation ,Semigroup ,Weak solution ,Nonlocal diffusion ,010102 general mathematics ,010101 applied mathematics ,Ordinary differential equation ,35K55 ,Laplace operator ,Stability ,Analysis - Abstract
Random diffusive age-structured population models have been studied by many researchers. Though nonlocal diffusion processes are more applicable to many biological and physical problems compared with random diffusion processes, there are very few theoretical results on age-structured population models with nonlocal diffusion. In this paper our objective is to develop basic theory for age-structured population dynamics with nonlocal diffusion. In particular, we study the semigroup of linear operators associated to an age-structured model with nonlocal diffusion and use the spectral properties of its infinitesimal generator to determine the stability of the zero steady state. It is shown that (i) the structure of the semigroup for the age-structured model with nonlocal diffusion is essentially determined by that of the semigroups for the age-structured model without diffusion and the nonlocal operator when both birth and death rates are independent of spatial variables; (ii) the asymptotic behavior can be determined by the sign of spectral bound of the infinitesimal generator when both birth and death rates are dependent on spatial variables; (iii) the weak solution and comparison principle can be established when both birth and death rates are dependent on spatial variables and time; and (iv) the above results can be generalized to an age-size structured model. In addition, we compare our results with the age-structured model with Laplacian diffusion in the first two cases (i) and (ii).
- Published
- 2020
28. Global Dynamics of a Susceptible-Infectious-Recovered Epidemic Model with a Generalized Nonmonotone Incidence Rate
- Author
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Shigui Ruan, Min Lu, Pei Yu, and Jicai Huang
- Subjects
Hopf bifurcation ,Cusp (singularity) ,010102 general mathematics ,Degenerate energy levels ,Multiplicity (mathematics) ,Saddle-node bifurcation ,Codimension ,Degenerate Hopf bifurcation of codimension three ,01 natural sciences ,Article ,010101 applied mathematics ,Combinatorics ,symbols.namesake ,Nilpotent ,symbols ,Quantitative Biology::Populations and Evolution ,Generalized nonmonotone incidence rate ,Backward bifurcation ,Bogdanov–Takens bifurcation of codimension three ,0101 mathematics ,Analysis ,Bifurcation ,Mathematics ,SIRS epidemic model - Abstract
A susceptible-infectious-recovered (SIRS) epidemic model with a generalized nonmonotone incidence rate \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\frac{kIS}{1+\beta I+\alpha I^2}$$\end{document}kIS1+βI+αI2 (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\beta >-2 \sqrt{\alpha }$$\end{document}β>-2α such that \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$1+\beta I+\alpha I^{2}>0$$\end{document}1+βI+αI2>0 for all \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$I\ge 0$$\end{document}I≥0) is considered in this paper. It is shown that the basic reproduction number \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_0$$\end{document}R0 does not act as a threshold value for the disease spread anymore, and there exists a sub-threshold value \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_*(
- Published
- 2020
29. Periodic solutions of an age-structured epidemic model with periodic infection rate
- Author
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Shigui Ruan, Qimin Huang, and Hao Kang
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Time periodic ,Applied Mathematics ,010102 general mathematics ,Fixed-point theorem ,General Medicine ,Type (model theory) ,Seasonality ,medicine.disease ,01 natural sciences ,Infection rate ,010101 applied mathematics ,medicine ,Quantitative Biology::Populations and Evolution ,Applied mathematics ,0101 mathematics ,Epidemic model ,Basic reproduction number ,Age structured ,Analysis ,Mathematics - Abstract
In this paper we consider an age-structured epidemic model of the susceptible-exposed-infectious-recovered (SEIR) type. To characterize the seasonality of some infectious diseases such as measles, it is assumed that the infection rate is time periodic. After establishing the well-posedness of the initial-boundary value problem, we study existence of time periodic solutions of the model by using a fixed point theorem. Some numerical simulations are presented to illustrate the obtained results.
- Published
- 2020
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30. Dynamic analysis and optimal control of a three-age-class HIV/AIDS epidemic model in China
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Peng Wu, Hongyong Zhao, and Shigui Ruan
- Subjects
education.field_of_study ,Transmission (medicine) ,Applied Mathematics ,010102 general mathematics ,Population ,medicine.disease ,Optimal control ,01 natural sciences ,law.invention ,010101 applied mathematics ,Next-generation matrix ,Condom ,Acquired immunodeficiency syndrome (AIDS) ,law ,medicine ,Discrete Mathematics and Combinatorics ,0101 mathematics ,Psychology ,Epidemic model ,education ,Basic reproduction number ,Demography - Abstract
Based on the fact that HIV/AIDS manifests different transmission characteristics and pathogenesis in different age groups, and the proportions of youth and elderly HIV infected cases in total are increasing in China, we classify the whole population into three age groups, youth (15-24), adult (25-49), and elderly ( \begin{document}$ \geqslant $\end{document} 50), and establish a three-age-class HIV/AIDS epidemic model to investigate the transmission dynamics of HIV/AIDS in China. We derive the explicit expression for the basic reproduction number via the next generation matrix approach. Qualitative analysis of the model including the local, global behavior and permanence is carried out. In particular, numerical simulations are presented to reinforce these analytical results and demonstrate HIV epidemiological discrepancy among different age groups. We also formulate an optimal control problem and solve it using Pontryagin's Maximum Principle and an efficient iterative numerical methods. Our numerical results of optimal controls for the elderly group indicate that increasing the condom use and decreasing the rate of the formerly HIV infected persons converted to AIDS patients are important measures to control HIV/AIDS epidemic among elderly population.
- Published
- 2020
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31. Asymptotic and Transient Dynamics of SEIR Epidemic Models on Weighted Networks
- Author
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CANRONG TIAN, ZUHAN LIU, and SHIGUI RUAN
- Subjects
Applied Mathematics ,Quantitative Biology::Populations and Evolution ,Quantitative Biology::Other ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,ComputingMilieux_MISCELLANEOUS - Abstract
We study the effect of population mobility on the transmission dynamics of infectious diseases by considering a susceptible-exposed-infectious-recovered (SEIR) epidemic model with graph Laplacian diffusion, that is, on a weighted network. First, we establish the existence and uniqueness of solutions to the SEIR model defined on a weighed graph. Then by constructing Liapunov functions, we show that the disease-free equilibrium is globally asymptotically stable if the basic reproduction number is less than unity and the endemic equilibrium is globally asymptotically stable if the basic reproduction number is greater than unity. Finally, we apply our generalized weighed graph to Watts–Strogatz network and carry out numerical simulations, which demonstrate that degrees of nodes determine peak numbers of the infectious population as well as the time to reach these peaks. It also indicates that the network has an impact on the transient dynamical behaviour of the epidemic transmission.
- Published
- 2022
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32. Linking mathematical models and trap data to infer the proliferation, abundance, and control of Aedes aegypti
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Jing Chen, Xi Huo, André B.B. Wilke, John C. Beier, Chalmers Vasquez, William Petrie, Robert Stephen Cantrell, Chris Cosner, and Shigui Ruan
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Infectious Diseases ,Insect Science ,Veterinary (miscellaneous) ,Parasitology - Published
- 2023
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- View/download PDF
33. Dynamics of a nonlocal dispersal SIS epidemic model with Neumann boundary conditions
- Author
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Fei-Ying Yang, Shigui Ruan, and Wan-Tong Li
- Subjects
Applied Mathematics ,Diffusion operator ,010102 general mathematics ,01 natural sciences ,Spatial heterogeneity ,010101 applied mathematics ,Infectious disease (medical specialty) ,Neumann boundary condition ,Quantitative Biology::Populations and Evolution ,Biological dispersal ,Statistical physics ,Uniqueness ,0101 mathematics ,Epidemic model ,Basic reproduction number ,Analysis ,Mathematics - Abstract
In this paper we study a nonlocal dispersal susceptible-infected-susceptible (SIS) epidemic model with Neumann boundary condition, where the spatial movement of individuals is described by a nonlocal (convolution) diffusion operator, the transmission rate and recovery rate are spatially heterogeneous, and the total population number is constant. We first define the basic reproduction number R 0 and discuss the existence, uniqueness and stability of steady states of the nonlocal dispersal SIS epidemic model in terms of R 0 . Then we consider the impacts of the large diffusion rates of the susceptible and infectious populations on the persistence and extinction of the disease. The obtained results indicate that the nonlocal movement of the susceptible or infectious individuals will enhance the persistence of the infectious disease. In particular, our analytical results suggest that the spatial heterogeneity tends to boost the spread of the infectious disease.
- Published
- 2019
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34. Modeling the seasonality of Methicillin-resistant Staphylococcus aureus infections in hospitals with environmental contamination
- Author
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Shigui Ruan, Xi Huo, Qimin Huang, and Darlene Miller
- Subjects
environmental contamination ,medicine.disease_cause ,01 natural sciences ,Antibiotic prescribing ,Microbiology ,basic reproduction number ,medicine ,0101 mathematics ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,lcsh:Environmental sciences ,lcsh:GE1-350 ,Ecology ,business.industry ,010102 general mathematics ,Antibiotic exposure ,persistent ,Seasonality ,biochemical phenomena, metabolism, and nutrition ,Contamination ,bacterial infections and mycoses ,Methicillin-resistant Staphylococcus aureus ,010101 applied mathematics ,antibiotic exposure ,lcsh:Biology (General) ,Staphylococcus aureus ,business - Abstract
A deterministic mathematical model with periodic antibiotic prescribing rate is constructed to study the seasonality of Methicillin-resistant Staphylococcus aureus (MRSA) infections taking antibiotic exposure and environmental contamination into consideration. The basic reproduction number $ R_0 $ for the periodic model is calculated under the assumption that there are only uncolonized patients with antibiotic exposure at admission. Sensitivity analysis of $ R_0 $ with respect to some essential parameters is performed. It is shown that the infection would go to extinction if the basic reproduction number is less than unity and would persist if it is greater than unity. Numerical simulations indicate that environmental cleaning is the most important intervention to control the infection, which emphasizes the effect of environmental contamination in MRSA infections. It is also important to highlight the importance of effective antimicrobial stewardship programmes, increase active screening at admission and subsequent isolation of positive cases, and treat patients quickly and efficiently.
- Published
- 2019
35. Bifurcation Analysis of a Dynamical Model for the Innate Immune Response to Initial Pulmonary Infections
- Author
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Shigui Ruan, Shujing Shi, Jing Wen, and Jicai Huang
- Subjects
0303 health sciences ,Innate immune system ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Decreased lymphocyte count ,Applied Mathematics ,Increased neutrophil count ,medicine.disease ,Quantitative Biology::Cell Behavior ,Organ damage ,03 medical and health sciences ,Pneumonia ,0302 clinical medicine ,Bifurcation analysis ,Modeling and Simulation ,Modelling and Simulation ,Immunology ,medicine ,Bogdanov–Takens bifurcation ,business ,Nonlinear Sciences::Pattern Formation and Solitons ,Engineering (miscellaneous) ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
It has been reported that COVID-19 patients had an increased neutrophil count and a decreased lymphocyte count in the severe phase and neutrophils may contribute to organ damage and mortality. In this paper, we present the bifurcation analysis of a dynamical model for the initial innate system response to pulmonary infection. The model describes the interaction between a pathogen and neutrophilis (also known as polymorphonuclear leukocytes). It is shown that the system undergoes a sequence of bifurcations including subcritical and supercritical Bogdanov–Takens bifurcations, Hopf bifurcation, and degenerate Hopf bifurcation as the parameters vary, and the model exhibits rich dynamics such as the existence of multiple coexistent periodic oscillations, homoclinic orbits, bistability and tristability, etc. Numerical simulations are presented to explain the theoretical results.
- Published
- 2020
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36. Estimating Asymptomatic and Undetected Cases in the COVID-19 Outbreak in Wuhan
- Author
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Shigui Ruan, Jing Chen, and Xi Huo
- Subjects
Pediatrics ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Medicine ,Outbreak ,medicine.symptom ,business ,Asymptomatic - Abstract
Background: The COVID-19 outbreak in Wuhan started in December 2019 and was under control by the end of March 2020 with a total of 50,006 confirmed cases by the implementation of a series of nonpharmaceutical interventions (NPIs) including unprecedented lockdown of the city. This study analyzes the complete outbreak data from Wuhan, assesses the impact of these public health interventions, and estimates asymptomatic and undetected cases in the outbreak.Methods: By taking different stages of the outbreak into account, we developed a time-dependent compartmental model to describe the dynamics of disease transmission and case detection and reporting. Model coefficients were parameterized by using the reported cases and following key events and escalated control strategies. Then the model was used to calibrate the complete outbreak data by using the Monte Carlo Markov Chain (MCMC) method. Finally we used the model to estimate asymptomatic and undetected cases and approximate the overall antibody prevalence level.Results: We found that the transmission rate between Jan 24 and Feb 1 was twice as large as that before the lockdown on Jan 23 and 67.6% (95% CI [0.584; 0.759]) of detectable infections occurred during this period.. Based on the reported estimates that around 20% of infections were asymptomatic and their transmission ability was about 70% of symptomatic ones, we estimated that there were about 14,448 undetected cases (95% CI [12,364; 23,254]), which yields an estimate of a total of 64,454 infected cases (95% CI [62,370; 73,260]), and the overall antibody prevalence level in the population of Wuhan was 0.745% (95% CI [0.693%, 0.814%]) by March 31, 2020.Conclusions: We conclude that the control of the COVID-19 outbreak in Wuhan was achieved via the enforcement of a combination of multiple NPIs: the lockdown on Jan 23, the stay-at-home order on Feb 2, the massive isolation of all symptomatic individuals via newly constructed special shelter hospitals on Feb 6, and the large scale screening process on Feb 18. Our results indicate that the population in Wuhan is far away from establishing herd immunity and provide insights for other affected countries and regions in designing control strategies and adjusting reopen plans.
- Published
- 2020
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37. Spatial Propagation in an Epidemic Model with Nonlocal Diffusion: the Influences of Initial Data and Dispersals
- Author
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Wen Bing Xu, Wan-Tong Li, and Shigui Ruan
- Subjects
education.field_of_study ,General Mathematics ,media_common.quotation_subject ,010102 general mathematics ,Population ,Type (model theory) ,01 natural sciences ,Stability (probability) ,Asymmetry ,35C07, 35K57, 92D25 ,010101 applied mathematics ,Monotone polygon ,Mathematics - Analysis of PDEs ,Exponential growth ,FOS: Mathematics ,Statistical physics ,0101 mathematics ,Diffusion (business) ,Epidemic model ,education ,Mathematics ,media_common ,Analysis of PDEs (math.AP) - Abstract
This paper studies an epidemic model with nonlocal dispersals. We focus on the influences of initial data and nonlocal dispersals on its spatial propagation. Here, initial data stand for the spatial concentrations of the infectious agent and the infectious human population when the epidemic breaks out and the nonlocal dispersals mean their diffusion strategies. Two types of initial data decaying to zero exponentially or faster are considered. For the first type, we show that spreading speeds are two constants whose signs change with the number of elements in some set. Moreover, we find an interesting phenomenon: the asymmetry of nonlocal dispersals can influence the propagating directions of the solutions and the stability of steady states. For the second type, we show that the spreading speed is decreasing with respect to the exponentially decaying rate of initial data, and further, its minimum value coincides with the spreading speed for the first type. In addition, we give some results about the nonexistence of traveling wave solutions and the monotone property of the solutions. Finally, some applications are presented to illustrate the theoretical results.
- Published
- 2020
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38. On a macrophage and tumor cell chemotaxis system with both paracrine and autocrine loops
- Author
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Li Xie and Shigui Ruan
- Subjects
Applied Mathematics ,General Medicine ,Analysis - Abstract
In this paper, we consider a homogeneous Neumann initial-boundary value problem (IBVP) for the following two-species and two-stimuli chemotaxis model with both paracrine and autocrine loops: \begin{document}$ \begin{equation*} \label{IBVP} \left\{ \begin{aligned} &u_t = \nabla\cdot(D_1(u)\nabla u-S_1(u)\nabla v), &\qquad x\in\Omega, \, t>0, \\ & \tau_1 v_t = \Delta v- v+w, &\qquad x\in\Omega, \, t>0, \\ &w_t = \nabla\cdot(D_2(w)\nabla w-S_2(w)\nabla z-S_3(w)\nabla v), &\qquad x\in\Omega, \, t>0, \\ & \tau_2 z_t = \Delta z- z+ u, &\qquad x\in\Omega, \, t>0, \end{aligned} \right. \end{equation*} $\end{document} where \begin{document}$ u(t, x) $\end{document} and \begin{document}$ w(t, x) $\end{document} denote the density of macrophages and tumor cells at time \begin{document}$ t $\end{document} and location \begin{document}$ x\in \Omega, $\end{document} respectively, \begin{document}$ v(t, x) $\end{document} and \begin{document}$ z(t, x) $\end{document} represent the concentration of colony stimulating factor 1 (CSF-1) secreted by the tumor cells and epidermal growth factor (EGF) secreted by macrophages at time \begin{document}$ t $\end{document} and location \begin{document}$ x\in \Omega, $\end{document} respectively. \begin{document}$ \Omega\subset \mathbb{R}^n $\end{document} is a bounded region with smooth boundary, \begin{document}$ \tau_i\ge 0 \; (i = 1, 2) $\end{document}, \begin{document}$ D_i(s)\ge d_i(s+1)^{m_i-1} $\end{document} with parameters \begin{document}$ m_i\ge 1 \; (i = 1, 2) $\end{document} and \begin{document}$ S_j(s)\lesssim (s+1)^{q_j} $\end{document} with parameters \begin{document}$ q_j>0 \;(j = 1, 2, 3) $\end{document}. For the case without autocrine loop (i.e., \begin{document}$ S_3(w) = 0 $\end{document}), it is shown that when \begin{document}$ q_j\le 1 \; (j = 1, 2) $\end{document}, if one of \begin{document}$ q_j $\end{document} is smaller than one or one of \begin{document}$ m_i $\end{document} is larger than one, then the IBVP has a global classical solution which is uniformly bounded. Moreover, when \begin{document}$ m_1 = m_2 = q_1 = q_2 = 1 $\end{document}, an inequality involving the product \begin{document}$ d_1d_2 $\end{document} and the product of the two species' initial mass is obtained which guarantees the existence of global bounded classical solutions. More specifically, it allows one of \begin{document}$ d_i $\end{document} to be small or one of the species initial mass to be large. For the case with autocrine loop (i.e \begin{document}$ S_3(w)\ne 0 $\end{document}), similar results hold only if \begin{document}$ q_3. If \begin{document}$ q_3 = 1 $\end{document}, solutions to the IBVP exist globally only when \begin{document}$ d_2 $\end{document} is suitably large or the mass of species \begin{document}$ w $\end{document} is suitably small.
- Published
- 2022
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39. On an advection–reaction–diffusion competition system with double free boundaries modeling invasion and competition of Aedes Albopictus and Aedes Aegypti mosquitoes
- Author
-
Shigui Ruan and Canrong Tian
- Subjects
Aedes albopictus ,biology ,Advection ,Applied Mathematics ,media_common.quotation_subject ,010102 general mathematics ,Mathematical analysis ,Front (oceanography) ,Aedes aegypti ,biology.organism_classification ,01 natural sciences ,Upper and lower bounds ,Competition (biology) ,010101 applied mathematics ,Reaction–diffusion system ,Initial value problem ,0101 mathematics ,Analysis ,media_common ,Mathematics - Abstract
Based on the invasion of the Aedes albopictus mosquitoes and the competition between Ae. albopictus and Ae. aegypti mosquitoes in the United States, we consider an advection–reaction–diffusion competition system with two free boundaries consisting of an invasive species (Ae. albopictus) with density u and a local species (Ae. aegypti) with density v in which u invades the environment with leftward front x = g ( t ) and rightward front x = h ( t ) . In the case that the competition between the two species is strong-weak and species v wins over species u, the solution ( u , v ) converges uniformly to the semi-positive equilibrium ( 0 , 1 ) , while the two fronts satisfy that lim t → ∞ ( g ( t ) , h ( t ) ) = ( g ∞ , h ∞ ) ⊂ R . In the case that the competition between the two species is weak, we show that when the advection coefficients are less than fixed thresholds there are two scenarios for the long time behavior of solutions: (i) when the initial habitat h 0 π ( 4 − ν 1 2 ) − 1 and the initial value of u is sufficiently small, the solution ( u , v ) converges uniformly to the semi-positive equilibrium ( 0 , 1 ) with the two fronts ( g ∞ , h ∞ ) ⊂ R ; (ii) when the initial habitat h 0 ≥ π ( 4 − ν 1 2 ) − 1 , the solution ( u , v ) converges locally uniformly to the interior equilibrium with the two fronts ( g ∞ , h ∞ ) = R . In addition, we propose an upper bound and a lower bound for the asymptotic spreading speeds of the leftward and rightward fronts. Numerical simulations are also provided to confirm our theoretical results.
- Published
- 2018
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40. Bifurcations in a discrete predator–prey model with nonmonotonic functional response
- Author
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Shigui Ruan, Sanhong Liu, Dongmei Xiao, and Jicai Huang
- Subjects
education.field_of_study ,Applied Mathematics ,010102 general mathematics ,Population ,Saddle-node bifurcation ,Codimension ,Function (mathematics) ,01 natural sciences ,010101 applied mathematics ,Singularity ,Transcritical bifurcation ,Quantitative Biology::Populations and Evolution ,Applied mathematics ,Bogdanov–Takens bifurcation ,0101 mathematics ,education ,Nonlinear Sciences::Pattern Formation and Solitons ,Analysis ,Bifurcation ,Mathematics - Abstract
The predator–prey/consumer–resource interaction is the most fundamental and important process in population dynamics. Many species, such as monocarpic plants and semelparous animals, have discrete nonoverlapping generations and their births occur in regular breeding seasons. Their interactions are described by difference equations or formulated as discrete-time mappings. In this paper we study bifurcations in a discrete predator–prey model with nonmonotone functional response described by a simplified Holling IV function. It is shown that the model exhibits various bifurcations of codimension 1, including fold bifurcation, transcritical bifurcation, flip bifurcations and Neimark–Sacker bifurcation, as the values of parameters vary. Moreover, we establish the existence of Bogdanov–Takens bifurcation of codimension 2 and calculate the approximate expressions of bifurcation curves. Numerical simulations are also presented to illustrate the theoretical analysis. These results demonstrate that the Bogdanov–Takens bifurcation of codimension 2 at the degenerate singularity persists in all three versions of the predator–prey model with nonmonotone functional response: continuous-time, time-delayed, and discrete-time.
- Published
- 2018
- Full Text
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41. Fast propagation for reaction–diffusion cooperative systems
- Author
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Shigui Ruan, Wen Bing Xu, and Wan-Tong Li
- Subjects
Applied Mathematics ,010102 general mathematics ,Zero (complex analysis) ,Function (mathematics) ,01 natural sciences ,010101 applied mathematics ,Multivibrator ,Nonlinear system ,Exponential growth ,Reaction–diffusion system ,Initial value problem ,Statistical physics ,0101 mathematics ,Analysis ,Mathematics - Abstract
This paper deals with the spatial propagation for reaction–diffusion cooperative systems. It is well-known that the solution of a reaction–diffusion equation with monostable nonlinearity spreads at a finite speed when the initial condition decays to zero exponentially or faster, and propagates fast when the initial condition decays to zero more slowly than any exponentially decaying function. However, in reaction–diffusion cooperative systems, a new possibility happens in which one species propagates fast although its initial condition decays exponentially or faster. The fundamental reason is that the growth sources of one species come from the other species. Simply speaking, we find a new interesting phenomenon that the spatial propagation of one species is accelerated by the other species. This is a unique phenomenon in reaction–diffusion systems. We present a framework of fast propagation for reaction–diffusion cooperative systems.
- Published
- 2018
- Full Text
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42. Traveling wave solutions for time periodic reaction-diffusion systems
- Author
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Wei Jian Bo, Guo Lin, and Shigui Ruan
- Subjects
Physics ,Steady state ,Time periodic ,Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,Fixed-point theorem ,Kinetic energy ,01 natural sciences ,Stability (probability) ,010101 applied mathematics ,Reaction–diffusion system ,Traveling wave ,Discrete Mathematics and Combinatorics ,Initial value problem ,0101 mathematics ,Analysis - Abstract
This paper deals with traveling wave solutions for time periodic reaction-diffusion systems. The existence of traveling wave solutions is established by combining the fixed point theorem with super- and sub-solutions, which reduces the existence of traveling wave solutions to the existence of super- and sub-solutions. The asymptotic behavior is determined by the stability of periodic solutions of the corresponding initial value problems. To illustrate the abstract results, we investigate a time periodic Lotka-Volterra system with two species by presenting the existence and nonexistence of traveling wave solutions, which connect the trivial steady state to the unique positive periodic solution of the corresponding kinetic system.
- Published
- 2018
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43. A free boundary problem for Aedes aegypti mosquito invasion
- Author
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Canrong Tian and Shigui Ruan
- Subjects
Meteorology ,biology ,Advection ,Applied Mathematics ,fungi ,010102 general mathematics ,Front (oceanography) ,Boundary (topology) ,Mechanics ,Aedes aegypti ,biology.organism_classification ,Quantitative Biology::Other ,01 natural sciences ,010101 applied mathematics ,Wind driven ,Modeling and Simulation ,parasitic diseases ,Free boundary problem ,Traveling wave ,Quantitative Biology::Populations and Evolution ,Moving speed ,0101 mathematics ,Mathematics - Abstract
An advection–reaction–diffusion model with free boundary is proposed to investigate the invasive process of Aedes aegypti mosquitoes. By analyzing the free boundary problem, we show that there are two main scenarios of invasive regime: vanishing regime or spreading regime, depending on a threshold in terms of model parameters. Once the mortality rate of the mosquito becomes large with a small specific rate of maturation, the invasive mosquito will go extinct. By introducing the definition of asymptotic spreading speed to describe the spreading front, we provide an estimate to show that the boundary moving speed cannot be faster than the minimal traveling wave speed. By numerical simulations, we consider that the mosquitoes invasive ability and wind driven advection effect on the boundary moving speed. The greater the mosquito invasive ability or advection, the larger the boundary moving speed. Our results indicate that the mosquitoes asymptotic spreading speed can be controlled by modulating the invasive ability of winged mosquitoes.
- Published
- 2017
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44. A mathematical model for the seasonal transmission of schistosomiasis in the lake and marshland regions of China
- Author
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Shigui Ruan, Yingke Li, Xiaomei Feng, Mingtao Li, and Zhidong Teng
- Subjects
0301 basic medicine ,China ,Marsh ,Sanitation ,Snails ,Population ,Basic Reproduction Number ,Schistosomiasis ,01 natural sciences ,Schistosoma japonicum ,law.invention ,03 medical and health sciences ,law ,parasitic diseases ,medicine ,Animals ,Humans ,0101 mathematics ,education ,Infectious Disease Medicine ,education.field_of_study ,geography ,geography.geographical_feature_category ,Ecology ,Applied Mathematics ,010102 general mathematics ,General Medicine ,Models, Theoretical ,medicine.disease ,Lakes ,Computational Mathematics ,030104 developmental biology ,Transmission (mechanics) ,Schistosomiasis japonica ,Wetlands ,Modeling and Simulation ,Parasitic disease ,Communicable Disease Control ,Seasons ,Physical geography ,General Agricultural and Biological Sciences ,Basic reproduction number ,Algorithms - Abstract
Schistosomiasis, a parasitic disease caused by \textit{ Schistosoma Japonicum}, is still one of the most serious parasitic diseases in China and remains endemic in seven provinces, including Hubei, Anhui, Hunan, Jiangsu, Jiangxi, Sichuan, and Yunnan. The monthly data of human schistosomiasis cases in Hubei, Hunan, and Anhui provinces (lake and marshland regions) released by the Chinese Center for Disease Control and Prevention (China CDC) display a periodic pattern with more cases in late summer and early autumn. Based on this observation, we construct a deterministic model with periodic transmission rates to study the seasonal transmission dynamics of schistosomiasis in these lake and marshland regions in China. We calculate the basic reproduction number R0, discuss the dynamical behavior of solutions to the model, and use the model to fit the monthly data of human schistosomiasis cases in Hubei. We also perform some sensitivity analysis of the basic reproduction number R0 in terms of model parameters. Our results indicate that treatment of at-risk population groups, improving sanitation, hygiene education, and snail control are effective measures in controlling human schistosomiasis in these lakes and marshland regions.
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- 2017
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45. On the existence of axisymmetric traveling fronts in Lotka-Volterra competition-diffusion systems in ℝ3
- Author
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Hui Ling Niu, Zhi-Cheng Wang, and Shigui Ruan
- Subjects
Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,Rotational symmetry ,Regular polygon ,Front (oceanography) ,Space (mathematics) ,01 natural sciences ,010101 applied mathematics ,Monotone polygon ,Planar ,Discrete Mathematics and Combinatorics ,Partial derivative ,0101 mathematics ,Axial symmetry ,Mathematics - Abstract
This paper is concerned with the following two-species Lotka-Volterra competition-diffusion system in the three-dimensional spatial space {partial derivative/partial derivative tu(1) (x, t) = Delta u(1) (x, t) + u(1) (x, t) [1 - u(1) (x, t) - k(1)u(2) (x, t)] , {partial derivative/partial derivative tu(2) (x, t) = d Delta u(2) (x, t) + ru(2) (x, t) [1 - u(2) (x, t) - k(2)u(1) (x, t)] , where x is an element of R-3 and t > 0. For the bistable case, namely k(1) , k(2) > 1, it is well known that the system admits a one-dimensional monotone traveling front Phi(x + ct) = (Phi(1) (x + ct), Phi(2) (x + ct)) connecting two stable equilibria E-u = (1, 0) and E-v = (0, 1), where c is an element of R is the unique wave speed. Recently, two-dimensional V-shaped fronts and high-dimensional pyramidal traveling fronts have been studied under the assumption c > 0. In this paper it is shown that for any s > c > 0, the system admits axisymmetric traveling fronts psi(x', x(3) + st) = Phi(1)(x ', x(3) + st), Phi(2)(x ', x(3) + st) in R-3 connecting E-u = (1, 0) and E-v = (0, 1), where x' is an element of R-2. Here an axisymmetric traveling front means a traveling front which is axially symmetric with respect to the x 3-axis. Moreover, some important qualitative properties of the axisymmetric traveling fronts are given. When s tends to c, it is proven that the axisymmetric traveling fronts converge locally uniformly to planar traveling wave fronts in R-3. The existence of axisymmetric traveling fronts is obtained by constructing a sequence of pyramidal traveling fronts and taking its limit. The qualitative properties are established by using the comparison principle and appealing to the asymptotic speed of propagation for the resulting system. Finally, the nonexistence of axisymmetric traveling fronts with concave/convex level set is discussed.
- Published
- 2017
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46. Special issue: Spatial dynamics for epidemic models with dispersal of organisms and heterogenity of environment
- Author
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Zhi Cheng Wang, Shigui Ruan, and Arnaud Ducrot
- Subjects
Computational Mathematics ,Geography ,Ecology ,Applied Mathematics ,Modeling and Simulation ,QA1-939 ,Biological dispersal ,General Medicine ,General Agricultural and Biological Sciences ,TP248.13-248.65 ,Mathematics ,Biotechnology - Published
- 2020
- Full Text
- View/download PDF
47. Spatial propagation in nonlocal dispersal Fisher-KPP equations
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Shigui Ruan, Wen Bing Xu, and Wan-Tong Li
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media_common.quotation_subject ,010102 general mathematics ,Mathematical analysis ,Function (mathematics) ,01 natural sciences ,Asymmetry ,Stability (probability) ,Monotone polygon ,Exponential growth ,0103 physical sciences ,Biological dispersal ,010307 mathematical physics ,0101 mathematics ,Exponential decay ,Focus (optics) ,Analysis ,media_common ,Mathematics - Abstract
In this paper we focus on three problems about the spreading speeds of nonlocal dispersal Fisher-KPP equations. First, we study the signs of spreading speeds and find that they are determined by the asymmetry level of the nonlocal dispersal and f ′ ( 0 ) , where f is the reaction function. This indicates that asymmetric dispersal can influence the spatial dynamics in three aspects: it can determine the spatial propagation directions of solutions, influence the stability of equilibrium states, and affect the monotone property of solutions. Second, we give an improved proof of the spreading speed result by constructing new lower solutions and using the new “forward-backward spreading” method. Third, we investigate the relationship between spreading speed and exponentially decaying initial data. Our result demonstrates that when dispersal is symmetric, spreading speed decreases along with the increase of the exponential decay rate. In addition, the results on the signs of spreading speeds are applied to two special cases where we present more details on the influence of asymmetric dispersal.
- Published
- 2021
- Full Text
- View/download PDF
48. Modeling and control of local outbreaks of West Nile virus in the United States
- Author
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Guoyan Zhang, Jicai Huang, Shigui Ruan, Robert Stephen Cantrell, John C. Beier, Douglas O. Fuller, Chris Cosner, and Jing Chen
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0301 basic medicine ,Meteorology ,West Nile virus ,Transmission (medicine) ,Applied Mathematics ,030231 tropical medicine ,virus diseases ,Outbreak ,Zoology ,Mosquito population ,Biology ,medicine.disease_cause ,Disease control ,West Nile virus in the United States ,03 medical and health sciences ,Mosquito control ,030104 developmental biology ,0302 clinical medicine ,medicine ,Discrete Mathematics and Combinatorics ,Basic reproduction number - Abstract
West Nile virus (WNV) was first detected in the United States (U.S.) during an outbreak in New York City in 1999 with 62 human cases including seven deaths. In 2001, the first human case in Florida was identified, and in Texas and California it was 2002 and 2004, respectively. WNV has now been spread to almost all states in the US. In 2015, the Center for Disease Control and Prevention (CDC) reported 2,175 human cases, including 146 deaths, from 45 states. WNV is maintained in a cycle between mosquitoes and animal hosts in which birds are the predominant and preferred reservoirs while most mammals, including humans, are considered dead-end hosts, as they do not appear to develop high enough titers of WNV in the blood to infect mosquitoes. In this article, we propose a deterministic model by including interactions among mosquitoes, birds, and humans to study the local transmission dynamics of WNV. To validate the model, it is used to simulate the WNV human data of infected cases and accumulative deaths from 1999 to 2013 in the states of New York, Florida, Texas, and California as reported to the CDC. These simulations demonstrate that the epidemic of WNV in New York, Texas, and California (and thus in the U.S.) has not reached its equilibrium yet and may be expected to get worse if the current control strategies are not enhanced. Mathematical and numerical analyses of the model are carried out to understand the transmission dynamics of WNV and explore effective control measures for the local outbreaks of the disease. Our studies suggest that the larval mosquito control measure should be taken as early as possible in a season to control the mosquito population size and the adult mosquito control measure is necessary to prevent the transmission of WNV from mosquitoes to birds and humans.
- Published
- 2016
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49. Bifurcation and temporal periodic patterns in a plant–pollinator model with diffusion and time delay effects
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Jirong Huang, Zhihua Liu, and Shigui Ruan
- Subjects
Time Factors ,delay ,Differential equation ,Models, Biological ,01 natural sciences ,Stability (probability) ,symbols.namesake ,Animals ,0101 mathematics ,Diffusion (business) ,Pollination ,Unidirectional consumer–resource interaction ,lcsh:QH301-705.5 ,lcsh:Environmental sciences ,Ecology, Evolution, Behavior and Systematics ,Bifurcation ,Eigenvalues and eigenvectors ,Mathematics ,Hopfbifurcation ,lcsh:GE1-350 ,Hopf bifurcation ,Ecology ,diffusion ,010102 general mathematics ,Mathematical analysis ,Plants ,stability ,010101 applied mathematics ,Distribution (mathematics) ,lcsh:Biology (General) ,symbols ,Constant (mathematics) - Abstract
This paper deals with a plant–pollinator model with diffusion and time delay effects. By considering the distribution of eigenvalues of the corresponding linearized equation, we first study stability of the positive constant steady-state and existence of spatially homogeneous and spatially inhomogeneous periodic solutions are investigated. We then derive an explicit formula for determining the direction and stability of the Hopf bifurcation by applying the normal form theory and the centre manifold reduction for partial functional differential equations. Finally, we present an example and numerical simulations to illustrate the obtained theoretical results.
- Published
- 2016
- Full Text
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50. Bogdanov-Takens bifurcation of codimension 3 in a predator-prey model with constant-yield predator harvesting
- Author
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Jicai Huang, Sanhong Liu, Shigui Ruan, and Xinan Zhang
- Subjects
010101 applied mathematics ,Applied Mathematics ,010102 general mathematics ,0101 mathematics ,01 natural sciences ,Analysis - Published
- 2016
- Full Text
- View/download PDF
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