9 results on '"Tan-Sindhunata, G.M."'
Search Results
2. Clinical impact of additional findings detected by genome-wide non-invasive prenatal testing
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Schuurman, L.V., Sistermans, E.A., Opstal, D. van, Henneman, L., Bekker, M.N., Bax, C.J., Pieters, M.J., Bouman, K., Munnik, S. de, Hollander, N.S. den, Diderich, K.E.M., Faas, B.H.W., Feenstra, I., Go, A.T.J.I., Hoffer, M.J.V., Joosten, M., Komdeur, F.L., Lichtenbelt, K.D., Lombardi, M.P., Polak, M.G., Jehee, F.S., Schuring-Blom, H., Stevens, S.J.C., Srebniak, M.I., Suijkerbuijk, R.F., Tan-Sindhunata, G.M., Meij, K.R.M. van der, Maarle, M.C. van, Vernimmen, V., Zelderen-Bhola, S.L. van, Ravesteyn, N.T. van, Knapen, M.F.C.M., Macville, M.V.E., Galjaard, R.J.H., Dutch NIPT Consortium, Human genetics, Amsterdam Reproduction & Development (AR&D), Obstetrics and gynaecology, Pathology, Rehabilitation medicine, APH - Quality of Care, Obstetrics and Gynaecology, Human Genetics, ACS - Pulmonary hypertension & thrombosis, ARD - Amsterdam Reproduction and Development, Public Health, Clinical Genetics, Obstetrics & Gynecology, Department of Psychology, Education and Child Studies, Clinical genetics, Amsterdam Reproduction & Development, Emergency Medicine, Research Methods and Techniques, RS: GROW - R4 - Reproductive and Perinatal Medicine, Obstetrie & Gynaecologie, MUMC+: MA Medische Staf Obstetrie Gynaecologie (9), MUMC+: DA KG Lab Specialisten (9), MUMC+: DA KG Lab Centraal Lab (9), MUMC+: DA KG Polikliniek (9), and MUMC+: DA KG AIOS (9)
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Placenta ,Trisomy ,first tier test ,Cohort Studies ,genome-wide ,Pregnancy ,Prenatal Diagnosis/methods ,Prenatal Diagnosis ,Genetics ,Humans ,cfDNA ,Genetics (clinical) ,confined placental mosaicism ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Mosaicism ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,NIPS ,fetal trisomy ,PREECLAMPSIA ,common trisomies ,prenatal screening ,CELL-FREE DNA ,Female ,NIPT ,Follow-Up Studies ,rare autosomal trisomies - Abstract
Contains fulltext : 251979.pdf (Publisher’s version ) (Open Access) In the TRIDENT-2 study, all pregnant women in the Netherlands are offered genome-wide non-invasive prenatal testing (GW-NIPT) with a choice of receiving either full screening or screening solely for common trisomies. Previous data showed that GW-NIPT can reliably detect common trisomies in the general obstetric population and that this test can also detect other chromosomal abnormalities (additional findings). However, evidence regarding the clinical impact of screening for additional findings is lacking. Therefore, we present follow-up results of the TRIDENT-2 study to determine this clinical impact based on the laboratory and perinatal outcomes of cases with additional findings. Between April 2017 and April 2019, additional findings were detected in 402/110,739 pregnancies (0.36%). For 358 cases, the origin was proven to be either fetal (n = 79; 22.1%), (assumed) confined placental mosaicism (CPM) (n = 189; 52.8%), or maternal (n = 90; 25.1%). For the remaining 44 (10.9%), the origin of the aberration could not be determined. Most fetal chromosomal aberrations were pathogenic and associated with severe clinical phenotypes (61/79; 77.2%). For CPM cases, occurrence of pre-eclampsia (8.5% [16/189] vs 0.5% [754/159,924]; RR 18.5), and birth weight
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- 2022
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3. Clinical impact of additional findings detected by genome-wide non-invasive prenatal testing: Follow-up results of the TRIDENT-2 study
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Prooyen Schuurman, L. van, Sistermans, E.A., Opstal, D. Van, Henneman, L., Bekker, M.N., Bax, C.J., Pieters, M.J., Bouman, Katelijne, Munnik, S.A. de, Hollander, N.S. den, Diderich, K.E.M., Faas, B.H.W., Feenstra, I., Go, A., Hoffer, M.J.V., Joosten, Marieke, Komdeur, F.L., Lichtenbelt, K.D., Lombardi, M.P., Polak, M.G., Jehee, F.S., Schuring-Blom, H., Stevens, S.J.C., Srebniak, M.I., Suijkerbuijk, R.F., Tan-Sindhunata, G.M., Meij, K.R.M. van der, Maarle, M.C. van, Vernimmen, V., Zelderen-Bhola, S.L. van, Ravesteyn, N.T. van, Knapen, M., Macville, M.V.E., Galjaard, R.H., Prooyen Schuurman, L. van, Sistermans, E.A., Opstal, D. Van, Henneman, L., Bekker, M.N., Bax, C.J., Pieters, M.J., Bouman, Katelijne, Munnik, S.A. de, Hollander, N.S. den, Diderich, K.E.M., Faas, B.H.W., Feenstra, I., Go, A., Hoffer, M.J.V., Joosten, Marieke, Komdeur, F.L., Lichtenbelt, K.D., Lombardi, M.P., Polak, M.G., Jehee, F.S., Schuring-Blom, H., Stevens, S.J.C., Srebniak, M.I., Suijkerbuijk, R.F., Tan-Sindhunata, G.M., Meij, K.R.M. van der, Maarle, M.C. van, Vernimmen, V., Zelderen-Bhola, S.L. van, Ravesteyn, N.T. van, Knapen, M., Macville, M.V.E., and Galjaard, R.H.
- Abstract
Item does not contain fulltext, In the TRIDENT-2 study, all pregnant women in the Netherlands are offered genome-wide non-invasive prenatal testing (GW-NIPT) with a choice of receiving either full screening or screening solely for common trisomies. Previous data showed that GW-NIPT can reliably detect common trisomies in the general obstetric population and that this test can also detect other chromosomal abnormalities (additional findings). However, evidence regarding the clinical impact of screening for additional findings is lacking. Therefore, we present follow-up results of the TRIDENT-2 study to determine this clinical impact based on the laboratory and perinatal outcomes of cases with additional findings. Between April 2017 and April 2019, additional findings were detected in 402/110,739 pregnancies (0.36%). For 358 cases, the origin was proven to be either fetal (n = 79; 22.1%), (assumed) confined placental mosaicism (CPM) (n = 189; 52.8%), or maternal (n = 90; 25.1%). For the remaining 44 (10.9%), the origin of the aberration could not be determined. Most fetal chromosomal aberrations were pathogenic and associated with severe clinical phenotypes (61/79; 77.2%). For CPM cases, occurrence of pre-eclampsia (8.5% [16/189] vs 0.5% [754/159,924]; RR 18.5), and birth weight <2.3rd percentile (13.6% [24/177] vs 2.5% [3,892/155,491]; RR 5.5) were significantly increased compared to the general obstetric population. Of the 90 maternal findings, 12 (13.3%) were malignancies and 32 (35.6%) (mosaic) pathogenic copy number variants, mostly associated with mild or no clinical phenotypes. Data from this large cohort study provide crucial information for deciding if and how to implement GW-NIPT in screening programs. Additionally, these data can inform the challenging interpretation, counseling, and follow-up of additional findings.
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- 2022
4. Fetal akinesia deformation sequence and massive perivillous fibrin deposition resulting in fetal death in six fetuses from one consanguineous couple, including literature review
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Tjon, J.K., Lakeman, P., Leeuwen, Elisabeth van, Waisfisz, Q., Weiss, M.M., Tan-Sindhunata, G.M., Nikkels, P.G., Voorn, P.J.P. van der, Salomons, G.S., Burchell, G.L., Linskens, I.H., Knoop, B.J. van der, Vries, J.I.P. de, Tjon, J.K., Lakeman, P., Leeuwen, Elisabeth van, Waisfisz, Q., Weiss, M.M., Tan-Sindhunata, G.M., Nikkels, P.G., Voorn, P.J.P. van der, Salomons, G.S., Burchell, G.L., Linskens, I.H., Knoop, B.J. van der, and Vries, J.I.P. de
- Abstract
Contains fulltext : 243984.pdf (Publisher’s version ) (Open Access)
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- 2021
5. Origin and clinical relevance of chromosomal aberrations other than the common trisomies detected by genome-wide NIPS: results of the TRIDENT study
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Opstal, D. van, Maarle, M.C. van, Lichtenbelt, K., Weiss, M.M., Schuring-Blom, H., Bhola, S.L., Hoffer, M.J.V., Huijsdens-van Amsterdam, K., Macville, M.V., Kooper, A.J.A., Faas, B.H.W., Govaerts, L., Tan-Sindhunata, G.M., Hollander, N. den, Feenstra, I., Galjaard, R.J.H., Oepkes, D., Ghesquiere, S., Brouwer, R.W.W., Beulen, L., Bollen, S., Elferink, M.G., Straver, R., Henneman, L., Page-Christiaens, G.C., Sistermans, E.A., Dutch NIPT Consortium, MUMC+: DA KG Lab Centraal Lab (9), RS: FHML non-thematic output, Human Genetics, Human genetics, Amsterdam Reproduction & Development (AR&D), APH - Quality of Care, Amsterdam Neuroscience - Complex Trait Genetics, Clinical Genetics, and Cell biology
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0301 basic medicine ,CVS MOSAICISM ,FETAL DNA ,Placenta ,DUTCH LABORATORIES ,MATERNAL MALIGNANCIES ,Aneuploidy ,noninvasive testing ,Chromosome Disorders ,Trisomy ,genome-wide NIPS ,Bioinformatics ,0302 clinical medicine ,Pregnancy ,Prenatal Diagnosis/methods ,Prenatal Diagnosis ,TERM PLACENTAE ,Original Research Article ,Confined placental mosaicism ,Genetics (clinical) ,confined placental mosaicism ,030219 obstetrics & reproductive medicine ,ANEUPLOIDIES ,Pregnancy Outcome ,Genomics ,ASSOCIATION ,trisomy 21 ,CONFIRMATION ,Reconstructive and regenerative medicine Radboud Institute for Molecular Life Sciences [Radboudumc 10] ,Cell-free fetal DNA ,CELL-FREE DNA ,Female ,Genetic Testing/methods ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] ,medicine.medical_specialty ,DNA Copy Number Variations ,Prenatal diagnosis ,Chromosome aberration ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,medicine ,Placenta/metabolism ,Humans ,Genetic Testing ,PRENATAL-DIAGNOSIS ,Gynecology ,Chromosome Aberrations ,Autosome ,Whole Genome Sequencing ,business.industry ,ANEUPLOIDY ,Chromosome Disorders/diagnosis ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,Chromosome ,medicine.disease ,Genomics/methods ,030104 developmental biology ,prenatal screening ,business ,FOLLOW-UP - Abstract
PurposeNoninvasive prenatal screening (NIPS) using cell-free DNA in maternal blood is highly sensitive for detecting fetal trisomies 21, 18, and 13. Using a genome-wide approach, other chromosome anomalies can also be detected. We report on the origin, frequency, and clinical significance of these other chromosome aberrations found in pregnancies at risk for trisomy 21, 18, or 13.MethodsWhole-genome shallow massively parallel sequencing was used and all autosomes were analyzed.ResultsIn 78 of 2,527 cases (3.1%) NIPS was indicative of trisomy 21, 18, or 13, and in 41 (1.6%) of other chromosome aberrations. The latter were of fetal (n = 10), placental (n = 22), maternal (n = 1) or unknown (n = 7). One case lacked cytogenetic follow-up. Nine of the 10 fetal cases were associated with an abnormal phenotype. Thirteen of the 22 (59%) placental aberrations were associated with fetal congenital anomalies and/or poor fetal growth (
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- 2018
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6. TRIDENT-2: National Implementation of Genome-Wide Non-Invasive Prenatal Testing as a First-Tier Screening Test in the Netherlands
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Meij, K.R.M. van der, Sistermans, E.A., Macville, M.V.E., Stevens, S.J.C., Bax, C.J., Bekker, M.N., Bilardo, C.M., Boon, E.M.J., Boter, M., Diderich, K.E.M., Die-Smulders, C.E.M. de, Duin, L.K., Faas, B.H.W., Feenstra, I., Haak, M.C., Hoffer, M.J.V., Hollander, N.S. den, Hollink, I.H.I.M., Jehee, F.S., Knapen, M.F.C.M., Kooper, A.J.A., Langen, I.M. van, Lichtenbelt, K.D., Linskens, I.H., Maarle, M.C. van, Oepkes, D., Pieters, M.J., Schuring-Blom, G.H., Sikkel, E., Sikkema-Raddatz, B., Smeets, D.F.C.M., Srebniak, M.I., Suijkerbuijk, R.F., Tan-Sindhunata, G.M., Ven, A.J.E.M. van der, Zelderen-Bhola, S.L. van, Henneman, L., Galjaard, R.J.H., Opstal, D. van, Weiss, M.M., Dutch NIPT Consortium, Health Psychology Research (HPR), Reproductive Origins of Adult Health and Disease (ROAHD), Obstetrics and Gynaecology, Human Genetics, Clinical Genetics, MUMC+: DA KG Lab Centraal Lab (9), RS: GROW - R4 - Reproductive and Perinatal Medicine, MUMC+: DA KG Polikliniek (9), Klinische Genetica, Obstetrie & Gynaecologie, MUMC+: MA Medische Staf Obstetrie Gynaecologie (9), Human genetics, Amsterdam Reproduction & Development (AR&D), Amsterdam Neuroscience - Complex Trait Genetics, Obstetrics and gynaecology, and APH - Quality of Care
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0301 basic medicine ,Trisomy 13 Syndrome ,IMPACT ,030105 genetics & heredity ,genome-wide ,0302 clinical medicine ,Pregnancy ,Prenatal Diagnosis/methods ,Prenatal Diagnosis ,Down Syndrome/diagnosis ,Genetics(clinical) ,DOWN-SYNDROME ,Young adult ,cfDNA ,First ,Genetics (clinical) ,Netherlands ,Trisomy 13 Syndrome/diagnosis ,Genome ,030219 obstetrics & reproductive medicine ,Obstetrics ,implementation study ,Middle Aged ,Prognosis ,fetal trisomy ,common trisomies ,Parental anxiety ,CELL-FREE DNA ,Christian ministry ,Female ,Pregnancy Trimester ,HEALTH ,Genetic Testing/methods ,PREGNANT-WOMEN ,Human ,rare autosomal trisomies ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] ,Adult ,medicine.medical_specialty ,Screening test ,Adolescent ,first tier test ,Netherlands/epidemiology ,Prenatal care ,ORGANIZATION ,Article ,03 medical and health sciences ,Young Adult ,All institutes and research themes of the Radboud University Medical Center ,medicine ,Genetics ,Journal Article ,Humans ,Genetic Testing ,Trisomy 18 Syndrome/diagnosis ,Chromosome Aberrations ,business.industry ,Genome, Human ,Non invasive ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,Health Plan Implementation ,medicine.disease ,NIPS ,Pregnancy Trimester, First ,prenatal screening ,EXPERIENCE ,Down Syndrome ,Trisomy ,business ,NIPT ,Trisomy 18 Syndrome ,Follow-Up Studies - Abstract
The Netherlands launched a nationwide implementation study on non-invasive prenatal testing (NIPT) as a first-tier test offered to all pregnant women. This started on April 1, 2017 as the TRIDENT-2 study, licensed by the Dutch Ministry of Health. In the first year, NIPT was performed in 73,239 pregnancies (42% of all pregnancies), 7,239 (4%) chose first-trimester combined testing, and 54% did not participate. The number of trisomies 21 (239, 0.33%), 18 (49, 0.07%), and 13 (55, 0.08%) found in this study is comparable to earlier studies, but the Positive Predictive Values (PPV)—96% for trisomy 21, 98% for trisomy 18, and 53% for trisomy 13—were higher than expected. Findings other than trisomy 21, 18, or 13 were reported on request of the pregnant women; 78% of women chose to have these reported. The number of additional findings was 207 (0.36%); these included other trisomies (101, 0.18%, PPV 6%, many of the remaining 94% of cases are likely confined placental mosaics and possibly clinically significant), structural chromosomal aberrations (95, 0.16%, PPV 32%,) and complex abnormal profiles indicative of maternal malignancies (11, 0.02%, PPV 64%). The implementation of genome-wide NIPT is under debate because the benefits of detecting other fetal chromosomal aberrations must be balanced against the risks of discordant positives, parental anxiety, and a potential increase in (invasive) diagnostic procedures. Our first-year data, including clinical data and laboratory follow-up data, will fuel this debate. Furthermore, we describe how NIPT can successfully be embedded into a national screening program with a single chain for prenatal care including counseling, testing, and follow-up.
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- 2019
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7. Rare novel variants in the ZIC3 gene cause X-linked heterotaxy
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Paulussen, A.D., Steyls, A., Vanoevelen, J., Tienen, F.H. van, Krapels, I.P.C., Claes, G.R., Chocron, S., Velter, C., Tan-Sindhunata, G.M., Lundin, C., Valenzuela, I., Nagy, B., Bache, I., Maroun, L.L., Avela, K., Brunner, H.G., Smeets, H.J., Bakkers, J., Wijngaard, A. van den, Paulussen, A.D., Steyls, A., Vanoevelen, J., Tienen, F.H. van, Krapels, I.P.C., Claes, G.R., Chocron, S., Velter, C., Tan-Sindhunata, G.M., Lundin, C., Valenzuela, I., Nagy, B., Bache, I., Maroun, L.L., Avela, K., Brunner, H.G., Smeets, H.J., Bakkers, J., and Wijngaard, A. van den
- Abstract
Item does not contain fulltext, Variants in the ZIC3 gene are rare, but have demonstrated their profound clinical significance in X-linked heterotaxy, affecting in particular male patients with abnormal arrangement of thoracic and visceral organs. Several reports have shown relevance of ZIC3 gene variants in both familial and sporadic cases and with a predominance of mutations detected in zinc-finger domains. No studies so far have assessed the functional consequences of ZIC3 variants in an in vivo model organism. A study population of 348 patients collected over more than 10 years with a large variety of congenital heart disease including heterotaxy was screened for variants in the ZIC3 gene. Functional effects of three variants were assessed both in vitro and in vivo in the zebrafish. We identified six novel pathogenic variants (1,7%), all in either male patients with heterotaxy (n=5) or a female patient with multiple male deaths due to heterotaxy in the family (n=1). All variants were located within the zinc-finger domains or leading to a truncation before these domains. Truncating variants showed abnormal trafficking of mutated ZIC3 proteins, whereas the missense variant showed normal trafficking. Overexpression of wild-type and mutated ZIC protein in zebrafish showed full non-functionality of the two frame-shift variants and partial activity of the missense variant compared with wild-type, further underscoring the pathogenic character of these variants. Concluding, we greatly expanded the number of causative variants in ZIC3 and delineated the functional effects of three variants using in vitro and in vivo model systems.
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- 2016
8. Mutations in ISPD cause Walker-Warburg syndrome and defective glycosylation of alpha-dystroglycan
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Roscioli, T., Kamsteeg, E.J., Buysse, K., Maystadt, I., Reeuwijk, J. van, Elzen, C. van den, van Beusekom, E., Riemersma, M., Pfundt, R., Peart-Vissers, L.E.L.M., Schraders, M., Altunoglu, U., Buckley, M.F., Brunner, H.G., Grisart, B., Zhou, H., Veltman, J.A., Gilissen, C.F.H.A., Mancini, G.M.S., Delree, P., Willemsen, M.A.A.P., Ramadza, D.P., Chitayat, D., Bennett, C., Sheridan, E., Peeters, E.A., Tan-Sindhunata, G.M., de Die-Smulders, C.E., Devriendt, K., Kayserili, H., El-Hashash, O.A., Stemple, D.L., Lefeber, D.J., Lin, Y.Y., Bokhoven, J.H.L.M. van, Roscioli, T., Kamsteeg, E.J., Buysse, K., Maystadt, I., Reeuwijk, J. van, Elzen, C. van den, van Beusekom, E., Riemersma, M., Pfundt, R., Peart-Vissers, L.E.L.M., Schraders, M., Altunoglu, U., Buckley, M.F., Brunner, H.G., Grisart, B., Zhou, H., Veltman, J.A., Gilissen, C.F.H.A., Mancini, G.M.S., Delree, P., Willemsen, M.A.A.P., Ramadza, D.P., Chitayat, D., Bennett, C., Sheridan, E., Peeters, E.A., Tan-Sindhunata, G.M., de Die-Smulders, C.E., Devriendt, K., Kayserili, H., El-Hashash, O.A., Stemple, D.L., Lefeber, D.J., Lin, Y.Y., and Bokhoven, J.H.L.M. van
- Abstract
Contains fulltext : 108772.pdf (publisher's version ) (Closed access), Walker-Warburg syndrome (WWS) is an autosomal recessive multisystem disorder characterized by complex eye and brain abnormalities with congenital muscular dystrophy (CMD) and aberrant a-dystroglycan glycosylation. Here we report mutations in the ISPD gene (encoding isoprenoid synthase domain containing) as the second most common cause of WWS. Bacterial IspD is a nucleotidyl transferase belonging to a large glycosyltransferase family, but the role of the orthologous protein in chordates is obscure to date, as this phylum does not have the corresponding non-mevalonate isoprenoid biosynthesis pathway. Knockdown of ispd in zebrafish recapitulates the human WWS phenotype with hydrocephalus, reduced eye size, muscle degeneration and hypoglycosylated a-dystroglycan. These results implicate ISPD in a-dystroglycan glycosylation in maintaining sarcolemma integrity in vertebrates.
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- 2012
9. CRTAP mutations in lethal and severe osteogenesis imperfecta: the importance of combining biochemical and molecular genetic analysis.
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Dijk, F.S. Van, Nesbitt, I.M., Nikkels, P.G.J., Dalton, A., Bongers, E.M.H.F., Kamp, J.M. van de, Hilhorst-Hofstee, Y., Hollander, N.S. den, Lachmeijer, A.M., Marcelis, C.L.M., Tan-Sindhunata, G.M., Rijn, R.R. van, Meijers-Heijboer, H., Cobben, J.M., Pals, G., Dijk, F.S. Van, Nesbitt, I.M., Nikkels, P.G.J., Dalton, A., Bongers, E.M.H.F., Kamp, J.M. van de, Hilhorst-Hofstee, Y., Hollander, N.S. den, Lachmeijer, A.M., Marcelis, C.L.M., Tan-Sindhunata, G.M., Rijn, R.R. van, Meijers-Heijboer, H., Cobben, J.M., and Pals, G.
- Abstract
Contains fulltext : 80459.pdf (publisher's version ) (Closed access), Autosomal recessive lethal and severe osteogenesis imperfecta (OI) is caused by the deficiency of cartilage-associated protein (CRTAP) and prolyl-3-hydroxylase 1 (P3H1) because of CRTAP and LEPRE1 mutations. We analyzed five families in which 10 individuals had a clinical diagnosis of lethal and severe OI with an overmodification of collagen type I on biochemical testing and without a mutation in the collagen type I genes. CRTAP mutations not described earlier were identified in the affected individuals. Although it seems that one important feature of autosomal recessive OI due to CRTAP mutations is the higher consistency of radiological features with OI type II-B/III, differentiation between autosomal dominant and autosomal recessive OI on the basis of clinical, radiological and biochemical investigations proves difficult in the affected individuals reported here. These observations confirm that once a clinical diagnosis of OI has been made in an affected individual, biochemical testing for overmodification of collagen type I should always be combined with molecular genetic analysis of the collagen type I genes. If no mutations in the collagen type I genes are found, additional molecular genetic analysis of the CRTAP and LEPRE1 genes should follow. This approach will allow proper identification of the genetic cause of lethal or severe OI, which is important in providing prenatal diagnosis, preimplantation genetic diagnosis and estimating recurrence risk.
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- 2009
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